data_4D2 # _chem_comp.id 4D2 _chem_comp.name "5-[(2S)-4-methyl-2-[(pyridin-3-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-22 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4D2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CJP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4D2 C1 C1 C 0 1 Y N N -36.658 33.048 -19.135 5.981 -2.333 0.440 C1 4D2 1 4D2 C2 C2 C 0 1 Y N N -36.580 32.222 -18.037 4.874 -2.167 -0.373 C2 4D2 2 4D2 C3 C3 C 0 1 Y N N -32.521 31.681 -11.919 -2.365 -0.807 -1.921 C3 4D2 3 4D2 C4 C4 C 0 1 Y N N -32.136 32.484 -10.869 -3.144 -1.896 -1.567 C4 4D2 4 4D2 C5 C5 C 0 1 Y N N -37.178 34.310 -18.973 6.118 -1.543 1.567 C5 4D2 5 4D2 C6 C6 C 0 1 Y N N -37.538 33.987 -16.764 4.141 -0.440 1.135 C6 4D2 6 4D2 C7 C7 C 0 1 Y N N -37.030 32.712 -16.837 3.930 -1.196 -0.018 C7 4D2 7 4D2 C8 C8 C 0 1 Y N N -32.558 33.542 -13.453 -3.088 0.356 0.055 C8 4D2 8 4D2 C9 C9 C 0 1 Y N N -32.738 32.188 -13.193 -2.332 0.314 -1.121 C9 4D2 9 4D2 C10 C10 C 0 1 Y N N -31.963 33.814 -11.138 -3.899 -1.871 -0.407 C10 4D2 10 4D2 C11 C11 C 0 1 Y N N -32.169 34.319 -12.387 -3.876 -0.745 0.412 C11 4D2 11 4D2 C12 C12 C 0 1 N N N -36.965 31.866 -15.645 2.728 -0.975 -0.851 C12 4D2 12 4D2 C13 C13 C 0 1 N N N -32.755 34.192 -14.787 -3.055 1.553 0.914 C13 4D2 13 4D2 C14 C14 C 0 1 N N N -31.143 35.741 -11.214 -4.898 -2.388 1.521 C14 4D2 14 4D2 C15 C15 C 0 1 N N N -33.008 27.701 -14.006 2.800 3.894 -0.578 C15 4D2 15 4D2 C16 C16 C 0 1 N N N -33.872 27.366 -16.273 1.587 2.678 1.236 C16 4D2 16 4D2 C17 C17 C 0 1 N N N -33.142 31.206 -14.255 -1.481 1.494 -1.512 C17 4D2 17 4D2 C18 C18 C 0 1 N N N -34.620 29.351 -15.009 0.685 2.668 -1.094 C18 4D2 18 4D2 C19 C19 C 0 1 N N N -35.579 31.241 -13.731 0.636 0.180 -1.324 C19 4D2 19 4D2 C20 C20 C 0 1 N N N -33.450 28.412 -15.266 1.960 2.659 -0.248 C20 4D2 20 4D2 C21 C21 C 0 1 N N S -34.357 30.364 -13.908 -0.126 1.402 -0.807 C21 4D2 21 4D2 N22 N22 N 0 1 Y N N -37.625 34.809 -17.816 5.212 -0.636 1.877 N22 4D2 22 4D2 N23 N23 N 0 1 N N N -35.828 32.059 -14.893 1.826 -0.038 -0.498 N23 4D2 23 4D2 O24 O24 O 0 1 N N N -31.835 34.936 -15.228 -2.210 1.608 1.962 O24 4D2 24 4D2 O25 O25 O 0 1 N N N -37.874 31.082 -15.410 2.554 -1.640 -1.854 O25 4D2 25 4D2 O26 O26 O 0 1 N N N -33.841 33.977 -15.389 -3.791 2.491 0.678 O26 4D2 26 4D2 O27 O27 O 0 1 N N N -31.570 34.773 -10.246 -4.732 -2.798 0.151 O27 4D2 27 4D2 O28 O28 O 0 1 N N N -31.924 35.664 -12.418 -4.692 -0.964 1.480 O28 4D2 28 4D2 H1 H1 H 0 1 N N N -36.318 32.712 -20.103 6.728 -3.075 0.199 H1 4D2 29 4D2 H2 H2 H 0 1 N N N -36.178 31.223 -18.117 4.742 -2.769 -1.260 H2 4D2 30 4D2 H5 H5 H 0 1 N N N -37.229 34.945 -19.845 6.981 -1.671 2.204 H5 4D2 31 4D2 H3 H3 H 0 1 N N N -32.658 30.624 -11.746 -1.776 -0.838 -2.826 H3 4D2 32 4D2 H4 H4 H 0 1 N N N -31.978 32.082 -9.879 -3.164 -2.770 -2.201 H4 4D2 33 4D2 H6 H6 H 0 1 N N N -37.886 34.345 -15.806 3.422 0.313 1.422 H6 4D2 34 4D2 H171 H171 H 0 0 N N N -33.365 31.767 -15.174 -1.329 1.491 -2.592 H171 4D2 35 4D2 H172 H172 H 0 0 N N N -32.295 30.528 -14.435 -1.981 2.417 -1.218 H172 4D2 36 4D2 H23 H23 H 0 1 N N N -35.173 32.768 -15.153 1.965 0.492 0.302 H23 4D2 37 4D2 H24 H24 H 0 1 N N N -32.094 35.296 -16.068 -2.276 2.380 2.540 H24 4D2 38 4D2 H141 H141 H 0 0 N N N -31.249 36.748 -10.783 -5.904 -2.620 1.871 H141 4D2 39 4D2 H142 H142 H 0 0 N N N -30.087 35.557 -11.461 -4.152 -2.865 2.156 H142 4D2 40 4D2 H151 H151 H 0 0 N N N -32.695 28.443 -13.256 3.664 3.935 0.086 H151 4D2 41 4D2 H152 H152 H 0 0 N N N -33.844 27.107 -13.608 3.139 3.837 -1.612 H152 4D2 42 4D2 H153 H153 H 0 0 N N N -32.163 27.036 -14.238 2.196 4.791 -0.443 H153 4D2 43 4D2 H20 H20 H 0 1 N N N -32.606 28.989 -15.673 2.535 1.759 -0.466 H20 4D2 44 4D2 H161 H161 H 0 0 N N N -34.199 27.860 -17.200 0.944 3.534 1.438 H161 4D2 45 4D2 H162 H162 H 0 0 N N N -33.022 26.703 -16.491 1.059 1.759 1.490 H162 4D2 46 4D2 H163 H163 H 0 0 N N N -34.703 26.774 -15.861 2.493 2.753 1.838 H163 4D2 47 4D2 H21 H21 H 0 1 N N N -34.163 29.827 -12.968 -0.281 1.306 0.267 H21 4D2 48 4D2 H181 H181 H 0 0 N N N -34.838 29.897 -15.939 0.089 3.546 -0.844 H181 4D2 49 4D2 H182 H182 H 0 0 N N N -35.494 28.747 -14.724 0.951 2.697 -2.151 H182 4D2 50 4D2 H191 H191 H 0 0 N N N -36.455 30.599 -13.554 -0.008 -0.698 -1.272 H191 4D2 51 4D2 H192 H192 H 0 0 N N N -35.423 31.897 -12.862 0.937 0.350 -2.358 H192 4D2 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4D2 C1 C2 DOUB Y N 1 4D2 C1 C5 SING Y N 2 4D2 C2 C7 SING Y N 3 4D2 C3 C4 SING Y N 4 4D2 C3 C9 DOUB Y N 5 4D2 C4 C10 DOUB Y N 6 4D2 C5 N22 DOUB Y N 7 4D2 C6 C7 DOUB Y N 8 4D2 C6 N22 SING Y N 9 4D2 C7 C12 SING N N 10 4D2 C8 C9 SING Y N 11 4D2 C8 C11 DOUB Y N 12 4D2 C8 C13 SING N N 13 4D2 C9 C17 SING N N 14 4D2 C10 C11 SING Y N 15 4D2 C10 O27 SING N N 16 4D2 C11 O28 SING N N 17 4D2 C12 N23 SING N N 18 4D2 C12 O25 DOUB N N 19 4D2 C13 O24 SING N N 20 4D2 C13 O26 DOUB N N 21 4D2 C14 O27 SING N N 22 4D2 C14 O28 SING N N 23 4D2 C15 C20 SING N N 24 4D2 C16 C20 SING N N 25 4D2 C17 C21 SING N N 26 4D2 C18 C20 SING N N 27 4D2 C18 C21 SING N N 28 4D2 C19 C21 SING N N 29 4D2 C19 N23 SING N N 30 4D2 C1 H1 SING N N 31 4D2 C2 H2 SING N N 32 4D2 C5 H5 SING N N 33 4D2 C3 H3 SING N N 34 4D2 C4 H4 SING N N 35 4D2 C6 H6 SING N N 36 4D2 C17 H171 SING N N 37 4D2 C17 H172 SING N N 38 4D2 N23 H23 SING N N 39 4D2 O24 H24 SING N N 40 4D2 C14 H141 SING N N 41 4D2 C14 H142 SING N N 42 4D2 C15 H151 SING N N 43 4D2 C15 H152 SING N N 44 4D2 C15 H153 SING N N 45 4D2 C20 H20 SING N N 46 4D2 C16 H161 SING N N 47 4D2 C16 H162 SING N N 48 4D2 C16 H163 SING N N 49 4D2 C21 H21 SING N N 50 4D2 C18 H181 SING N N 51 4D2 C18 H182 SING N N 52 4D2 C19 H191 SING N N 53 4D2 C19 H192 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4D2 SMILES ACDLabs 12.01 "O=C(O)c1c(ccc2OCOc12)CC(CC(C)C)CNC(=O)c3cccnc3" 4D2 InChI InChI 1.03 "InChI=1S/C21H24N2O5/c1-13(2)8-14(10-23-20(24)16-4-3-7-22-11-16)9-15-5-6-17-19(28-12-27-17)18(15)21(25)26/h3-7,11,13-14H,8-10,12H2,1-2H3,(H,23,24)(H,25,26)/t14-/m0/s1" 4D2 InChIKey InChI 1.03 LRIOQCGZQZMXSL-AWEZNQCLSA-N 4D2 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](CNC(=O)c1cccnc1)Cc2ccc3OCOc3c2C(O)=O" 4D2 SMILES CACTVS 3.385 "CC(C)C[CH](CNC(=O)c1cccnc1)Cc2ccc3OCOc3c2C(O)=O" 4D2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)C[C@@H](Cc1ccc2c(c1C(=O)O)OCO2)CNC(=O)c3cccnc3" 4D2 SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)CC(Cc1ccc2c(c1C(=O)O)OCO2)CNC(=O)c3cccnc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4D2 "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(2S)-4-methyl-2-{[(pyridin-3-ylcarbonyl)amino]methyl}pentyl]-1,3-benzodioxole-4-carboxylic acid" 4D2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-[(2S)-4-methyl-2-[(pyridin-3-ylcarbonylamino)methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4D2 "Create component" 2013-12-22 EBI 4D2 "Initial release" 2014-01-08 RCSB 4D2 "Modify descriptor" 2014-09-05 RCSB #