data_4DP # _chem_comp.id 4DP _chem_comp.name "3-[5-(DIMETHYLAMINO)-1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2-YL]-L-ALANINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H15 N3 O4" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms "4-(N,N-DIMETHYLAMINO)PHTHALIMIDOALANYL; DAPA" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-10-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 277.276 _chem_comp.one_letter_code W _chem_comp.three_letter_code 4DP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4DP OAP OAP O 0 1 N N N N N N -25.561 64.445 13.703 -2.845 -4.293 0.238 OAP 4DP 1 4DP CAJ CAJ C 0 1 N N N N N N -26.768 64.320 13.892 -3.392 -3.231 0.471 CAJ 4DP 2 4DP CAL CAL C 0 1 Y N N N N N -27.681 65.365 13.954 -2.711 -1.936 0.442 CAL 4DP 3 4DP CAG CAG C 0 1 Y N N N N N -27.557 66.741 13.814 -1.394 -1.633 0.164 CAG 4DP 4 4DP CAH CAH C 0 1 Y N N N N N -28.686 67.549 13.888 -1.027 -0.285 0.212 CAH 4DP 5 4DP NAM NAM N 0 1 N N N N N N -28.555 68.857 13.668 0.308 0.085 -0.064 NAM 4DP 6 4DP CAD CAD C 0 1 N N N N N N -29.702 69.768 13.789 0.886 1.256 0.561 CAD 4DP 7 4DP CAC CAC C 0 1 N N N N N N -27.234 69.402 13.324 1.117 -0.711 -0.964 CAC 4DP 8 4DP CAE CAE C 0 1 Y N N N N N -29.935 66.973 14.102 -1.971 0.712 0.531 CAE 4DP 9 4DP CAF CAF C 0 1 Y N N N N N -30.059 65.594 14.240 -3.300 0.382 0.808 CAF 4DP 10 4DP CAK CAK C 0 1 Y N N N N N -28.926 64.790 14.165 -3.640 -0.955 0.755 CAK 4DP 11 4DP CAI CAI C 0 1 N N N N N N -28.707 63.418 14.218 -4.927 -1.607 0.990 CAI 4DP 12 4DP OAO OAO O 0 1 N N N N N N -29.575 62.560 14.378 -5.950 -1.016 1.285 OAO 4DP 13 4DP NAN NAN N 0 1 N N N N N N -27.413 63.168 14.048 -4.701 -2.955 0.807 NAN 4DP 14 4DP CB CB C 0 1 N N N N N N -26.814 61.830 13.947 -5.725 -3.970 0.951 CB 4DP 15 4DP CA CA C 0 1 N N S Y N N -26.452 61.205 15.296 -5.408 -4.949 2.074 CA 4DP 16 4DP C C C 0 1 N N N Y N Y -26.037 59.778 15.005 -5.292 -4.211 3.393 C 4DP 17 4DP O O O 0 1 N N N Y N Y -24.874 59.522 14.699 -6.227 -3.946 4.138 O 4DP 18 4DP N N N 0 1 N N N Y Y N -25.315 61.897 15.918 -6.441 -5.943 2.234 N 4DP 19 4DP OXT OXT O 0 1 N Y N Y N Y -26.975 58.845 15.084 -4.015 -3.822 3.646 OXT 4DP 20 4DP HAG HAG H 0 1 N N N N N N -26.586 67.183 13.648 -0.676 -2.408 -0.080 HAG 4DP 21 4DP HAD1 1HAD H 0 0 N N N N N N -29.880 69.996 14.850 1.953 1.100 0.738 HAD1 4DP 22 4DP HAD2 2HAD H 0 0 N N N N N N -29.489 70.700 13.245 0.396 1.455 1.518 HAD2 4DP 23 4DP HAD3 3HAD H 0 0 N N N N N N -30.596 69.290 13.362 0.761 2.130 -0.085 HAD3 4DP 24 4DP HAC1 1HAC H 0 0 N N N N N N -27.165 69.538 12.235 0.821 -1.762 -0.905 HAC1 4DP 25 4DP HAC2 2HAC H 0 0 N N N N N N -27.096 70.372 13.824 2.174 -0.628 -0.696 HAC2 4DP 26 4DP HAC3 3HAC H 0 0 N N N N N N -26.452 68.704 13.656 0.988 -0.366 -1.993 HAC3 4DP 27 4DP HAE HAE H 0 1 N N N N N N -30.813 67.600 14.161 -1.669 1.757 0.563 HAE 4DP 28 4DP HAF HAF H 0 1 N N N N N N -31.030 65.150 14.404 -4.026 1.149 1.052 HAF 4DP 29 4DP HB3 1HB H 0 1 N N N N N N -27.540 61.170 13.451 -5.813 -4.485 -0.012 HB3 4DP 30 4DP HB2 2HB H 0 1 N N N N N N -25.876 61.941 13.383 -6.668 -3.447 1.139 HB2 4DP 31 4DP HA HA H 0 1 N N N Y N N -27.309 61.271 15.983 -4.485 -5.507 1.882 HA 4DP 32 4DP H 1HN H 0 1 N N N Y Y N -24.604 62.054 15.232 -6.204 -6.831 2.640 H 4DP 33 4DP H2 2HN H 0 1 N Y N Y Y N -25.621 62.774 16.288 -7.318 -5.814 1.758 H2 4DP 34 4DP HXT HOXT H 0 1 N Y N Y N Y -26.599 57.999 14.873 -3.890 -3.310 4.473 HXT 4DP 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4DP OAP CAJ DOUB N N 1 4DP CAJ CAL SING N N 2 4DP CAJ NAN SING N N 3 4DP CAL CAG SING Y N 4 4DP CAL CAK DOUB Y N 5 4DP CAG CAH DOUB Y N 6 4DP CAG HAG SING N N 7 4DP CAH NAM SING N N 8 4DP CAH CAE SING Y N 9 4DP NAM CAC SING N N 10 4DP NAM CAD SING N N 11 4DP CAD HAD1 SING N N 12 4DP CAD HAD2 SING N N 13 4DP CAD HAD3 SING N N 14 4DP CAC HAC1 SING N N 15 4DP CAC HAC2 SING N N 16 4DP CAC HAC3 SING N N 17 4DP CAE CAF DOUB Y N 18 4DP CAE HAE SING N N 19 4DP CAF CAK SING Y N 20 4DP CAF HAF SING N N 21 4DP CAK CAI SING N N 22 4DP CAI NAN SING N N 23 4DP CAI OAO DOUB N N 24 4DP NAN CB SING N N 25 4DP CB CA SING N N 26 4DP CB HB3 SING N N 27 4DP CB HB2 SING N N 28 4DP CA C SING N N 29 4DP CA N SING N N 30 4DP CA HA SING N N 31 4DP C O DOUB N N 32 4DP C OXT SING N N 33 4DP N H SING N N 34 4DP N H2 SING N N 35 4DP OXT HXT SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4DP SMILES ACDLabs 10.04 "O=C(O)C(N)CN2C(=O)c1ccc(cc1C2=O)N(C)C" 4DP SMILES_CANONICAL CACTVS 3.341 "CN(C)c1ccc2C(=O)N(C[C@H](N)C(O)=O)C(=O)c2c1" 4DP SMILES CACTVS 3.341 "CN(C)c1ccc2C(=O)N(C[CH](N)C(O)=O)C(=O)c2c1" 4DP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc2c(c1)C(=O)N(C2=O)C[C@@H](C(=O)O)N" 4DP SMILES "OpenEye OEToolkits" 1.5.0 "CN(C)c1ccc2c(c1)C(=O)N(C2=O)CC(C(=O)O)N" 4DP InChI InChI 1.03 "InChI=1S/C13H15N3O4/c1-15(2)7-3-4-8-9(5-7)12(18)16(11(8)17)6-10(14)13(19)20/h3-5,10H,6,14H2,1-2H3,(H,19,20)/t10-/m0/s1" 4DP InChIKey InChI 1.03 NLRIIORQBUXJMD-JTQLQIEISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4DP "SYSTEMATIC NAME" ACDLabs 10.04 "3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine" 4DP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(5-dimethylamino-1,3-dioxo-isoindol-2-yl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4DP "Create component" 2006-10-25 RCSB 4DP "Modify descriptor" 2011-06-04 RCSB 4DP "Modify synonyms" 2020-06-05 PDBE 4DP "Modify backbone" 2023-11-03 PDBE 4DP "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 4DP "4-(N,N-DIMETHYLAMINO)PHTHALIMIDOALANYL" ? ? 2 4DP DAPA ? ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 4DP _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #