data_4DY # _chem_comp.id 4DY _chem_comp.name "(6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H27 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Capsaicin; 8-Methyl-N-vanillyl-trans-6-nonenamide; NGX-4010" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-04-30 _chem_comp.pdbx_modified_date 2020-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 305.412 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4DY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2N27 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4DY C1 C1 C 0 1 Y N N -7.807 -3.155 4.670 3.669 -0.272 0.785 C1 4DY 1 4DY C2 C2 C 0 1 Y N N -8.234 -4.043 5.655 4.400 0.639 0.045 C2 4DY 2 4DY C3 C3 C 0 1 Y N N -9.428 -4.730 5.483 5.565 0.240 -0.589 C3 4DY 3 4DY C4 C4 C 0 1 Y N N -10.193 -4.535 4.338 5.996 -1.079 -0.480 C4 4DY 4 4DY C5 C5 C 0 1 Y N N -9.767 -3.649 3.353 5.259 -1.987 0.262 C5 4DY 5 4DY C40 C40 C 0 1 N N N 4.908 -3.682 1.608 -8.465 -1.810 -1.250 C40 4DY 6 4DY C38 C38 C 0 1 N N N 3.749 -3.467 2.582 -8.280 -0.317 -0.969 C38 4DY 7 4DY C44 C44 C 0 1 N N N 4.170 -3.912 3.982 -9.547 0.240 -0.317 C44 4DY 8 4DY C37 C37 C 0 1 N N N 2.540 -4.285 2.130 -7.109 -0.122 -0.040 C37 4DY 9 4DY C36 C36 C 0 1 N N N 1.160 -4.008 2.730 -6.082 0.595 -0.423 C36 4DY 10 4DY C33 C33 C 0 1 N N N -0.056 -4.807 2.260 -4.911 0.790 0.506 C33 4DY 11 4DY C30 C30 C 0 1 N N N -1.220 -3.854 1.979 -3.625 0.347 -0.194 C30 4DY 12 4DY C27 C27 C 0 1 N N N -2.195 -3.879 3.157 -2.437 0.546 0.749 C27 4DY 13 4DY C24 C24 C 0 1 N N N -3.531 -3.272 2.725 -1.150 0.103 0.049 C24 4DY 14 4DY C22 C22 C 0 1 N N N -4.356 -2.919 3.963 0.020 0.298 0.978 C22 4DY 15 4DY O23 O23 O 0 1 N N N -3.817 -2.728 5.052 -0.157 0.747 2.090 O23 4DY 16 4DY N21 N21 N 0 1 N N N -5.680 -2.839 3.761 1.264 -0.026 0.572 N21 4DY 17 4DY C17 C17 C 0 1 N N N -6.613 -2.466 4.831 2.402 0.164 1.475 C17 4DY 18 4DY C6 C6 C 0 1 Y N N -8.571 -2.960 3.523 4.094 -1.583 0.889 C6 4DY 19 4DY O10 O10 O 0 1 N N N -11.353 -5.238 4.237 7.139 -1.475 -1.102 O10 4DY 20 4DY O12 O12 O 0 1 N N N -9.902 -5.616 6.399 6.285 1.134 -1.318 O12 4DY 21 4DY C13 C13 C 0 1 N N N -10.636 -4.918 7.410 5.782 2.470 -1.386 C13 4DY 22 4DY H2 H2 H 0 1 N N N -7.641 -4.196 6.545 4.063 1.662 -0.038 H2 4DY 23 4DY H5 H5 H 0 1 N N N -10.361 -3.498 2.464 5.589 -3.012 0.345 H5 4DY 24 4DY H40 H40 H 0 1 N N N 5.777 -3.092 1.935 -8.652 -2.335 -0.313 H40 4DY 25 4DY H6T H6T H 0 1 N N N 5.176 -4.749 1.587 -9.311 -1.951 -1.922 H6T 4DY 26 4DY H6S H6S H 0 1 N N N 4.605 -3.360 0.601 -7.562 -2.207 -1.714 H6S 4DY 27 4DY H38 H38 H 0 1 N N N 3.482 -2.400 2.602 -8.092 0.208 -1.906 H38 4DY 28 4DY H6U H6U H 0 1 N N N 3.336 -3.757 4.683 -9.734 -0.285 0.619 H6U 4DY 29 4DY H6V H6V H 0 1 N N N 4.439 -4.978 3.962 -9.415 1.303 -0.117 H6V 4DY 30 4DY H44 H44 H 0 1 N N N 5.038 -3.321 4.309 -10.393 0.099 -0.989 H44 4DY 31 4DY H37 H37 H 0 1 N N N 2.660 -5.059 1.387 -7.117 -0.573 0.941 H37 4DY 32 4DY H36 H36 H 0 1 N N N 1.045 -3.247 3.487 -6.073 1.046 -1.404 H36 4DY 33 4DY H33 H33 H 0 1 N N N -0.349 -5.522 3.043 -4.834 1.843 0.777 H33 4DY 34 4DY H6R H6R H 0 1 N N N 0.199 -5.354 1.341 -5.058 0.193 1.406 H6R 4DY 35 4DY H6Q H6Q H 0 1 N N N -0.834 -2.833 1.844 -3.702 -0.706 -0.465 H6Q 4DY 36 4DY H30 H30 H 0 1 N N N -1.742 -4.172 1.064 -3.478 0.944 -1.095 H30 4DY 37 4DY H27 H27 H 0 1 N N N -2.352 -4.918 3.481 -2.359 1.599 1.019 H27 4DY 38 4DY H6P H6P H 0 1 N N N -1.779 -3.294 3.990 -2.584 -0.051 1.649 H6P 4DY 39 4DY H6O H6O H 0 1 N N N -3.346 -2.362 2.136 -1.228 -0.950 -0.222 H6O 4DY 40 4DY H24 H24 H 0 1 N N N -4.083 -4.000 2.112 -1.003 0.700 -0.852 H24 4DY 41 4DY H21 H21 H 0 1 N N N -6.043 -3.040 2.851 1.406 -0.385 -0.318 H21 4DY 42 4DY H6N H6N H 0 1 N N N -6.172 -2.721 5.806 2.255 -0.433 2.375 H6N 4DY 43 4DY H17 H17 H 0 1 N N N -6.806 -1.384 4.787 2.479 1.217 1.745 H17 4DY 44 4DY H6 H6 H 0 1 N N N -8.234 -2.271 2.762 3.520 -2.292 1.467 H6 4DY 45 4DY H10 H10 H 0 1 N N N -11.462 -5.783 5.008 7.935 -1.378 -0.561 H10 4DY 46 4DY H6M H6M H 0 1 N N N -11.018 -5.637 8.149 4.788 2.461 -1.833 H6M 4DY 47 4DY H6L H6L H 0 1 N N N -9.975 -4.195 7.910 5.725 2.889 -0.381 H6L 4DY 48 4DY H13 H13 H 0 1 N N N -11.480 -4.384 6.948 6.449 3.079 -1.996 H13 4DY 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4DY C40 C38 SING N N 1 4DY C30 C33 SING N N 2 4DY C30 C27 SING N N 3 4DY C37 C38 SING N N 4 4DY C37 C36 DOUB N E 5 4DY C33 C36 SING N N 6 4DY C38 C44 SING N N 7 4DY C24 C27 SING N N 8 4DY C24 C22 SING N N 9 4DY C5 C6 DOUB Y N 10 4DY C5 C4 SING Y N 11 4DY C6 C1 SING Y N 12 4DY N21 C22 SING N N 13 4DY N21 C17 SING N N 14 4DY C22 O23 DOUB N N 15 4DY O10 C4 SING N N 16 4DY C4 C3 DOUB Y N 17 4DY C1 C17 SING N N 18 4DY C1 C2 DOUB Y N 19 4DY C3 C2 SING Y N 20 4DY C3 O12 SING N N 21 4DY O12 C13 SING N N 22 4DY C2 H2 SING N N 23 4DY C5 H5 SING N N 24 4DY C40 H40 SING N N 25 4DY C40 H6T SING N N 26 4DY C40 H6S SING N N 27 4DY C38 H38 SING N N 28 4DY C44 H6U SING N N 29 4DY C44 H6V SING N N 30 4DY C44 H44 SING N N 31 4DY C37 H37 SING N N 32 4DY C36 H36 SING N N 33 4DY C33 H33 SING N N 34 4DY C33 H6R SING N N 35 4DY C30 H6Q SING N N 36 4DY C30 H30 SING N N 37 4DY C27 H27 SING N N 38 4DY C27 H6P SING N N 39 4DY C24 H6O SING N N 40 4DY C24 H24 SING N N 41 4DY N21 H21 SING N N 42 4DY C17 H6N SING N N 43 4DY C17 H17 SING N N 44 4DY C6 H6 SING N N 45 4DY O10 H10 SING N N 46 4DY C13 H6M SING N N 47 4DY C13 H6L SING N N 48 4DY C13 H13 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4DY SMILES ACDLabs 12.01 "c1(CNC(CCCC[C@H]=CC(C)C)=O)cc(OC)c(cc1)O" 4DY InChI InChI 1.03 "InChI=1S/C18H27NO3/c1-14(2)8-6-4-5-7-9-18(21)19-13-15-10-11-16(20)17(12-15)22-3/h6,8,10-12,14,20H,4-5,7,9,13H2,1-3H3,(H,19,21)/b8-6+" 4DY InChIKey InChI 1.03 YKPUWZUDDOIDPM-SOFGYWHQSA-N 4DY SMILES_CANONICAL CACTVS 3.385 "COc1cc(CNC(=O)CCCC/C=C/C(C)C)ccc1O" 4DY SMILES CACTVS 3.385 "COc1cc(CNC(=O)CCCCC=CC(C)C)ccc1O" 4DY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)/C=C/CCCCC(=O)NCc1ccc(c(c1)OC)O" 4DY SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C=CCCCCC(=O)NCc1ccc(c(c1)OC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4DY "SYSTEMATIC NAME" ACDLabs 12.01 "(6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide" 4DY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(E)-N-[(3-methoxy-4-oxidanyl-phenyl)methyl]-8-methyl-non-6-enamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4DY "Create component" 2015-04-30 RCSB 4DY "Modify synonyms" 2015-05-05 RCSB 4DY "Modify synonyms" 2015-05-20 RCSB 4DY "Initial release" 2016-07-06 RCSB 4DY "Modify synonyms" 2020-05-26 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 4DY Capsaicin ? ? 2 4DY 8-Methyl-N-vanillyl-trans-6-nonenamide ? ? 3 4DY NGX-4010 ? ? #