data_4GW # _chem_comp.id 4GW _chem_comp.name ;5-(5-formylthiophen-2-yl)uridine 5'-(trihydrogen diphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N2 O13 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-13 _chem_comp.pdbx_modified_date 2013-01-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4GW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3V0N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4GW CBD CBD C 0 1 N N N 21.110 7.973 8.363 8.695 1.347 -1.553 CBD 4GW 1 4GW OAD OAD O 0 1 N N N 21.849 8.836 9.147 9.252 0.271 -1.645 OAD 4GW 2 4GW CBE CBE C 0 1 Y N N 21.581 6.568 8.301 7.391 1.422 -1.026 CBE 4GW 3 4GW SBB SBB S 0 1 Y N N 22.692 5.842 9.342 6.446 0.051 -0.463 SBB 4GW 4 4GW CAP CAP C 0 1 Y N N 21.184 5.590 7.377 6.667 2.578 -0.868 CAP 4GW 5 4GW CAQ CAQ C 0 1 Y N N 21.801 4.321 7.578 5.424 2.402 -0.336 CAQ 4GW 6 4GW CBF CBF C 0 1 Y N N 22.704 4.284 8.653 5.102 1.104 -0.044 CBF 4GW 7 4GW CBG CBG C 0 1 N N N 23.440 3.058 9.134 3.822 0.657 0.537 CBG 4GW 8 4GW CAR CAR C 0 1 N N N 23.162 1.790 8.608 2.974 -0.151 -0.171 CAR 4GW 9 4GW CBH CBH C 0 1 N N N 24.304 3.118 10.222 3.427 1.062 1.895 CBH 4GW 10 4GW OAE OAE O 0 1 N N N 24.609 4.334 10.791 4.149 1.777 2.565 OAE 4GW 11 4GW NAV NAV N 0 1 N N N 24.905 2.001 10.671 2.246 0.626 2.381 NAV 4GW 12 4GW CBI CBI C 0 1 N N N 24.648 0.807 10.117 1.453 -0.162 1.634 CBI 4GW 13 4GW OAF OAF O 0 1 N N N 25.180 -0.189 10.570 0.395 -0.542 2.096 OAF 4GW 14 4GW NBS NBS N 0 1 N N N 23.792 0.695 9.094 1.799 -0.547 0.395 NBS 4GW 15 4GW "C1'" "C1'" C 0 1 N N R 23.527 -0.629 8.522 0.893 -1.412 -0.366 "C1'" 4GW 16 4GW "O4'" "O4'" O 0 1 N N N 22.971 -0.534 7.149 -0.452 -0.890 -0.336 "O4'" 4GW 17 4GW "C2'" "C2'" C 0 1 N N R 22.542 -1.417 9.291 0.759 -2.796 0.317 "C2'" 4GW 18 4GW "O2'" "O2'" O 0 1 N N N 22.749 -2.775 9.087 1.801 -3.678 -0.108 "O2'" 4GW 19 4GW "C3'" "C3'" C 0 1 N N S 21.297 -0.966 8.653 -0.619 -3.279 -0.197 "C3'" 4GW 20 4GW "O3'" "O3'" O 0 1 N N N 20.214 -1.726 8.986 -0.457 -4.160 -1.310 "O3'" 4GW 21 4GW "C4'" "C4'" C 0 1 N N R 21.664 -1.033 7.208 -1.334 -1.986 -0.632 "C4'" 4GW 22 4GW "C5'" "C5'" C 0 1 N N N 20.749 -0.264 6.340 -2.641 -1.827 0.147 "C5'" 4GW 23 4GW "O5'" "O5'" O 0 1 N N N 20.506 1.065 6.679 -3.345 -0.679 -0.333 "O5'" 4GW 24 4GW PBT PBT P 0 1 N N N 19.086 1.468 7.167 -4.766 -0.210 0.262 PBT 4GW 25 4GW OAN OAN O 0 1 N N N 18.505 0.341 7.980 -5.727 -1.332 0.187 OAN 4GW 26 4GW OAG OAG O 0 1 N N N 19.153 2.707 8.037 -4.582 0.239 1.797 OAG 4GW 27 4GW OBA OBA O 0 1 N N N 18.216 1.769 5.915 -5.323 1.033 -0.598 OBA 4GW 28 4GW PBU PBU P 0 1 N N N 16.672 1.612 5.913 -6.760 1.746 -0.729 PBU 4GW 29 4GW OAO OAO O 0 1 N N N 16.028 2.863 5.370 -6.979 2.745 0.514 OAO 4GW 30 4GW OAH OAH O 0 1 N N N 16.122 1.428 7.313 -6.821 2.580 -2.105 OAH 4GW 31 4GW O1 O1 O 0 1 N N N 16.303 0.410 5.097 -7.824 0.717 -0.728 O1 4GW 32 4GW H1 H1 H 0 1 N N N 20.235 8.304 7.823 9.201 2.247 -1.870 H1 4GW 33 4GW H4 H4 H 0 1 N N N 20.475 5.781 6.585 7.051 3.549 -1.145 H4 4GW 34 4GW H5 H5 H 0 1 N N N 21.592 3.462 6.957 4.746 3.224 -0.157 H5 4GW 35 4GW H7 H7 H 0 1 N N N 22.441 1.685 7.811 3.234 -0.471 -1.169 H7 4GW 36 4GW H8 H8 H 0 1 N N N 25.554 2.062 11.430 1.967 0.883 3.274 H8 4GW 37 4GW H9 H9 H 0 1 N N N 24.471 -1.192 8.479 1.242 -1.522 -1.392 H9 4GW 38 4GW H10 H10 H 0 1 N N N 22.563 -1.144 10.356 0.756 -2.696 1.403 H10 4GW 39 4GW H11 H11 H 0 1 N N N 22.111 -3.271 9.586 1.759 -4.557 0.292 H11 4GW 40 4GW H12 H12 H 0 1 N N N 21.122 0.087 8.921 -1.172 -3.773 0.602 H12 4GW 41 4GW H13 H13 H 0 1 N N N 19.418 -1.263 8.752 0.039 -4.965 -1.106 H13 4GW 42 4GW H14 H14 H 0 1 N N N 21.651 -2.086 6.891 -1.539 -2.018 -1.702 H14 4GW 43 4GW H15 H15 H 0 1 N N N 19.781 -0.786 6.338 -3.257 -2.715 0.008 H15 4GW 44 4GW H16 H16 H 0 1 N N N 21.173 -0.273 5.325 -2.420 -1.700 1.207 H16 4GW 45 4GW H17 H17 H 0 1 N N N 18.816 2.506 8.902 -3.964 0.972 1.922 H17 4GW 46 4GW H18 H18 H 0 1 N N N 15.506 2.645 4.606 -6.317 3.447 0.576 H18 4GW 47 4GW H19 H19 H 0 1 N N N 15.666 0.596 7.368 -7.661 3.037 -2.251 H19 4GW 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4GW O1 PBU DOUB N N 1 4GW OAO PBU SING N N 2 4GW PBU OBA SING N N 3 4GW PBU OAH SING N N 4 4GW OBA PBT SING N N 5 4GW "C5'" "O5'" SING N N 6 4GW "C5'" "C4'" SING N N 7 4GW "O5'" PBT SING N N 8 4GW "O4'" "C4'" SING N N 9 4GW "O4'" "C1'" SING N N 10 4GW PBT OAN DOUB N N 11 4GW PBT OAG SING N N 12 4GW "C4'" "C3'" SING N N 13 4GW CAP CAQ SING Y N 14 4GW CAP CBE DOUB Y N 15 4GW CAQ CBF DOUB Y N 16 4GW CBE CBD SING N N 17 4GW CBE SBB SING Y N 18 4GW CBD OAD DOUB N N 19 4GW "C1'" NBS SING N N 20 4GW "C1'" "C2'" SING N N 21 4GW CAR NBS SING N N 22 4GW CAR CBG DOUB N N 23 4GW "C3'" "O3'" SING N N 24 4GW "C3'" "C2'" SING N N 25 4GW CBF CBG SING N N 26 4GW CBF SBB SING Y N 27 4GW "O2'" "C2'" SING N N 28 4GW NBS CBI SING N N 29 4GW CBG CBH SING N N 30 4GW CBI OAF DOUB N N 31 4GW CBI NAV SING N N 32 4GW CBH NAV SING N N 33 4GW CBH OAE DOUB N N 34 4GW CBD H1 SING N N 35 4GW CAP H4 SING N N 36 4GW CAQ H5 SING N N 37 4GW CAR H7 SING N N 38 4GW NAV H8 SING N N 39 4GW "C1'" H9 SING N N 40 4GW "C2'" H10 SING N N 41 4GW "O2'" H11 SING N N 42 4GW "C3'" H12 SING N N 43 4GW "O3'" H13 SING N N 44 4GW "C4'" H14 SING N N 45 4GW "C5'" H15 SING N N 46 4GW "C5'" H16 SING N N 47 4GW OAG H17 SING N N 48 4GW OAO H18 SING N N 49 4GW OAH H19 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4GW SMILES ACDLabs 12.01 "O=Cc3sc(C=1C(=O)NC(=O)N(C=1)C2OC(COP(=O)(O)OP(=O)(O)O)C(O)C2O)cc3" 4GW InChI InChI 1.03 "InChI=1S/C14H16N2O13P2S/c17-4-6-1-2-9(32-6)7-3-16(14(21)15-12(7)20)13-11(19)10(18)8(28-13)5-27-31(25,26)29-30(22,23)24/h1-4,8,10-11,13,18-19H,5H2,(H,25,26)(H,15,20,21)(H2,22,23,24)/t8-,10-,11-,13-/m1/s1" 4GW InChIKey InChI 1.03 JAVHWQPALRUGBE-UORFTKCHSA-N 4GW SMILES_CANONICAL CACTVS 3.370 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3sc(C=O)cc3" 4GW SMILES CACTVS 3.370 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3sc(C=O)cc3" 4GW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(sc1C=O)C2=CN(C(=O)NC2=O)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O" 4GW SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(sc1C=O)C2=CN(C(=O)NC2=O)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4GW "SYSTEMATIC NAME" ACDLabs 12.01 ;5-(5-formylthiophen-2-yl)uridine 5'-(trihydrogen diphosphate) ; 4GW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[5-(5-methanoylthiophen-2-yl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4GW "Create component" 2012-01-13 RCSB 4GW "Initial release" 2013-01-18 RCSB #