data_4IK
#
_chem_comp.id 4IK
_chem_comp.name "(2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid"
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C16 H25 N7 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-01-07
_chem_comp.pdbx_modified_date 2013-02-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 395.414
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4IK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4IKP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4IK C C C 0 1 N N N -15.126 34.946 90.007 5.138 2.521 -0.945 C 4IK 1
4IK N N N 0 1 N N N -17.381 34.047 90.436 5.877 1.452 1.108 N 4IK 2
4IK O O O 0 1 N N N -15.587 35.852 89.273 5.147 3.562 -0.332 O 4IK 3
4IK N1 N1 N 0 1 Y N N -17.711 23.722 93.508 -6.186 1.262 0.484 N1 4IK 4
4IK C2 C2 C 0 1 Y N N -17.194 24.904 94.049 -5.942 -0.032 0.376 C2 4IK 5
4IK N3 N3 N 0 1 Y N N -16.407 25.716 93.219 -4.723 -0.514 0.262 N3 4IK 6
4IK C4 C4 C 0 1 Y N N -16.183 25.355 91.944 -3.671 0.299 0.252 C4 4IK 7
4IK C5 C5 C 0 1 Y N N -16.695 24.213 91.460 -3.878 1.684 0.364 C5 4IK 8
4IK C6 C6 C 0 1 Y N N -17.445 23.414 92.236 -5.198 2.150 0.484 C6 4IK 9
4IK N6 N6 N 0 1 N N N -17.921 22.301 91.685 -5.464 3.504 0.598 N6 4IK 10
4IK N7 N7 N 0 1 Y N N -16.308 24.108 90.195 -2.659 2.274 0.328 N7 4IK 11
4IK C8 C8 C 0 1 Y N N -15.562 25.170 89.890 -1.740 1.361 0.203 C8 4IK 12
4IK N9 N9 N 0 1 Y N N -15.475 25.937 90.977 -2.314 0.126 0.152 N9 4IK 13
4IK CA CA C 0 1 N N S -15.979 33.673 90.201 5.275 1.213 -0.210 CA 4IK 14
4IK CB CB C 0 1 N N N -15.870 32.707 89.002 3.894 0.580 -0.033 CB 4IK 15
4IK NZ NZ N 0 1 N N N -15.630 30.929 85.946 3.421 -2.443 2.966 NZ 4IK 16
4IK "O3'" "O3'" O 0 1 N N N -12.675 29.470 91.164 -0.626 -3.834 -1.436 "O3'" 4IK 17
4IK "O2'" "O2'" O 0 1 N N N -12.424 26.912 91.339 -2.608 -2.229 -1.952 "O2'" 4IK 18
4IK CE CE C 0 1 N N N -14.303 31.136 86.535 2.809 -2.703 1.656 CE 4IK 19
4IK CG CG C 0 1 N N N -14.427 32.213 88.877 4.044 -0.804 0.601 CG 4IK 20
4IK "C5'" "C5'" C 0 1 N N N -15.111 29.718 88.551 1.925 -1.640 -0.425 "C5'" 4IK 21
4IK "O4'" "O4'" O 0 1 N N N -15.553 28.144 90.320 -0.248 -1.034 0.478 "O4'" 4IK 22
4IK CD CD C 0 1 N N S -14.226 30.899 88.071 2.659 -1.385 0.893 CD 4IK 23
4IK "C3'" "C3'" C 0 1 N N S -13.306 28.778 90.087 -0.218 -2.464 -1.448 "C3'" 4IK 24
4IK "C2'" "C2'" C 0 1 N N R -13.426 27.294 90.411 -1.453 -1.532 -1.479 "C2'" 4IK 25
4IK "C4'" "C4'" C 0 1 N N R -14.743 29.276 89.988 0.496 -2.102 -0.132 "C4'" 4IK 26
4IK "C1'" "C1'" C 0 1 N N R -14.763 27.244 91.105 -1.610 -1.152 0.015 "C1'" 4IK 27
4IK OXT OXT O 0 1 N Y N -14.024 34.988 90.603 5.000 2.530 -2.280 OXT 4IK 28
4IK H H H 0 1 N N N -17.930 33.221 90.561 5.305 2.074 1.660 H 4IK 29
4IK H2 H2 H 0 1 N Y N -17.441 34.615 91.257 6.039 0.584 1.595 H2 4IK 30
4IK H2A H2A H 0 1 N N N -17.394 25.182 95.073 -6.775 -0.720 0.381 H2A 4IK 31
4IK H62 H62 H 0 1 N N N -18.463 21.800 92.360 -4.734 4.143 0.596 H62 4IK 32
4IK H61 H61 H 0 1 N N N -18.498 22.537 90.903 -6.379 3.813 0.680 H61 4IK 33
4IK H8 H8 H 0 1 N N N -15.108 25.373 88.931 -0.678 1.554 0.148 H8 4IK 34
4IK HA HA H 0 1 N N N -15.600 33.148 91.090 5.912 0.539 -0.783 HA 4IK 35
4IK HB2 HB2 H 0 1 N N N -16.539 31.849 89.160 3.285 1.212 0.614 HB2 4IK 36
4IK HB3 HB3 H 0 1 N N N -16.159 33.232 88.080 3.411 0.484 -1.005 HB3 4IK 37
4IK HZ2 HNAA H 0 1 N N N -15.589 31.102 84.962 2.886 -1.765 3.487 HZ2 4IK 38
4IK HZ3 HNAB H 0 1 N N N -15.923 29.986 86.107 3.531 -3.298 3.490 HZ3 4IK 39
4IK "HO3'" "HO3'" H 0 0 N N N -11.775 29.176 91.246 -1.131 -4.101 -2.216 "HO3'" 4IK 40
4IK "HO2'" "HO2'" H 0 0 N N N -12.508 25.986 91.533 -2.521 -2.566 -2.854 "HO2'" 4IK 41
4IK HE3 HE3 H 0 1 N N N -13.600 30.445 86.047 3.443 -3.382 1.087 HE3 4IK 42
4IK HE2 HAJA H 0 1 N N N -13.997 32.173 86.333 1.827 -3.154 1.797 HE2 4IK 43
4IK HG2 HG2 H 0 1 N N N -13.842 33.003 88.384 4.576 -1.462 -0.086 HG2 4IK 44
4IK HG3 HG3 H 0 1 N N N -14.038 32.048 89.893 4.606 -0.719 1.531 HG3 4IK 45
4IK "H5''" "H5''" H 0 0 N N N -16.165 30.032 88.533 1.896 -0.720 -1.009 "H5''" 4IK 46
4IK "H5'" "H5'" H 0 1 N N N -14.970 28.867 87.869 2.448 -2.412 -0.989 "H5'" 4IK 47
4IK HD HD H 0 1 N N N -13.189 30.589 88.268 2.089 -0.679 1.496 HD 4IK 48
4IK "H3'" "H3'" H 0 1 N N N -12.778 28.926 89.134 0.430 -2.268 -2.303 "H3'" 4IK 49
4IK "H2'" "H2'" H 0 1 N N N -13.421 26.683 89.497 -1.259 -0.648 -2.087 "H2'" 4IK 50
4IK "H4'" "H4'" H 0 1 N N N -14.905 30.109 90.688 0.515 -2.967 0.532 "H4'" 4IK 51
4IK "H1'" "H1'" H 0 1 N N N -14.682 27.560 92.156 -2.135 -1.937 0.561 "H1'" 4IK 52
4IK HXT HXT H 0 1 N Y N -13.592 35.812 90.413 4.915 3.394 -2.707 HXT 4IK 53
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4IK O C DOUB N N 1
4IK C CA SING N N 2
4IK C OXT SING N N 3
4IK CA N SING N N 4
4IK N H SING N N 5
4IK N H2 SING N N 6
4IK C6 N1 DOUB Y N 7
4IK N1 C2 SING Y N 8
4IK N3 C2 DOUB Y N 9
4IK C2 H2A SING N N 10
4IK C4 N3 SING Y N 11
4IK N9 C4 SING Y N 12
4IK C5 C4 DOUB Y N 13
4IK N7 C5 SING Y N 14
4IK C5 C6 SING Y N 15
4IK N6 C6 SING N N 16
4IK N6 H62 SING N N 17
4IK N6 H61 SING N N 18
4IK C8 N7 DOUB Y N 19
4IK C8 N9 SING Y N 20
4IK C8 H8 SING N N 21
4IK N9 "C1'" SING N N 22
4IK CB CA SING N N 23
4IK CA HA SING N N 24
4IK CG CB SING N N 25
4IK CB HB2 SING N N 26
4IK CB HB3 SING N N 27
4IK NZ CE SING N N 28
4IK NZ HZ2 SING N N 29
4IK NZ HZ3 SING N N 30
4IK "C3'" "O3'" SING N N 31
4IK "O3'" "HO3'" SING N N 32
4IK "C2'" "O2'" SING N N 33
4IK "O2'" "HO2'" SING N N 34
4IK CE CD SING N N 35
4IK CE HE3 SING N N 36
4IK CE HE2 SING N N 37
4IK CD CG SING N N 38
4IK CG HG2 SING N N 39
4IK CG HG3 SING N N 40
4IK CD "C5'" SING N N 41
4IK "C5'" "C4'" SING N N 42
4IK "C5'" "H5''" SING N N 43
4IK "C5'" "H5'" SING N N 44
4IK "C4'" "O4'" SING N N 45
4IK "O4'" "C1'" SING N N 46
4IK CD HD SING N N 47
4IK "C4'" "C3'" SING N N 48
4IK "C3'" "C2'" SING N N 49
4IK "C3'" "H3'" SING N N 50
4IK "C2'" "C1'" SING N N 51
4IK "C2'" "H2'" SING N N 52
4IK "C4'" "H4'" SING N N 53
4IK "C1'" "H1'" SING N N 54
4IK OXT HXT SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4IK SMILES ACDLabs 12.01 "O=C(O)C(N)CCC(CN)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O"
4IK InChI InChI 1.03 "InChI=1S/C16H25N7O5/c17-4-7(1-2-8(18)16(26)27)3-9-11(24)12(25)15(28-9)23-6-22-10-13(19)20-5-21-14(10)23/h5-9,11-12,15,24-25H,1-4,17-18H2,(H,26,27)(H2,19,20,21)/t7-,8-,9+,11+,12+,15+/m0/s1"
4IK InChIKey InChI 1.03 CPUNUFGYWFHFOF-TVDBPQCTSA-N
4IK SMILES_CANONICAL CACTVS 3.370 "NC[C@@H](CC[C@H](N)C(O)=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"
4IK SMILES CACTVS 3.370 "NC[CH](CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"
4IK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C[C@H](CC[C@@H](C(=O)O)N)CN)O)O)N"
4IK SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CC(CCC(C(=O)O)N)CN)O)O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4IK "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5S)-2,6-diamino-5-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}hexanoic acid (non-preferred name)"
4IK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,5S)-5-(aminomethyl)-6-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-2-azanyl-hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4IK "Create component" 2013-01-07 RCSB
4IK "Initial release" 2013-02-08 RCSB
#