data_4IM # _chem_comp.id 4IM _chem_comp.name "scyllo-inositol 1,2,3,5-tetrakisphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H16 O18 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1R,2S,4R,5S)-2,4-bis(oxidanyl)-3,5,6-triphosphonooxy-cyclohexyl] dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-23 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.075 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4IM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PP9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4IM C04 C1 C 0 1 N N S N N N 9.483 29.939 85.176 -1.303 1.308 0.698 C04 4IM 1 4IM C03 C2 C 0 1 N N R N N N 10.854 29.876 85.813 0.077 1.255 0.038 C03 4IM 2 4IM C02 C3 C 0 1 N N N N N N 11.581 28.652 85.289 0.802 -0.019 0.476 C02 4IM 3 4IM C01 C4 C 0 1 N N S N N N 11.813 28.822 83.809 -0.014 -1.242 0.052 C01 4IM 4 4IM C06 C5 C 0 1 N N R N N N 10.460 28.773 83.145 -1.393 -1.188 0.711 C06 4IM 5 4IM C05 C6 C 0 1 N N N N N N 9.685 29.980 83.670 -2.119 0.086 0.274 C05 4IM 6 4IM O02 O1 O 0 1 N N N N N N 12.836 28.498 85.964 2.091 -0.069 -0.141 O02 4IM 7 4IM O03 O2 O 0 1 N N N N N N 10.758 29.801 87.252 0.839 2.397 0.435 O03 4IM 8 4IM O04 O3 O 0 1 N N N N N N 8.779 31.098 85.601 -1.980 2.499 0.290 O04 4IM 9 4IM O05 O4 O 0 1 N N N N N N 8.408 29.961 83.029 -3.407 0.136 0.890 O05 4IM 10 4IM O06 O5 O 0 1 N N N N N N 10.571 28.871 81.725 -2.155 -2.330 0.315 O06 4IM 11 4IM O01 O6 O 0 1 N N N N N N 12.694 27.796 83.300 0.664 -2.432 0.460 O01 4IM 12 4IM P02 P1 P 0 1 N N N N N N 13.438 27.157 86.643 3.463 -0.115 0.700 P02 4IM 13 4IM P01 P2 P 0 1 N N N N N N 14.108 28.157 82.576 1.154 -3.562 -0.577 P01 4IM 14 4IM P05 P3 P 0 1 N N N N N N 7.679 30.538 81.712 -4.780 0.181 0.050 P05 4IM 15 4IM O22 O7 O 0 1 N N N N N N 12.430 26.076 86.324 4.704 -0.298 -0.310 O22 4IM 16 4IM O21 O8 O 0 1 N N N N N N 13.601 27.398 88.128 3.636 1.260 1.520 O21 4IM 17 4IM O23 O9 O 0 1 N N N N N N 14.754 26.970 85.919 3.425 -1.252 1.646 O23 4IM 18 4IM O11 O10 O 0 1 N N N N N N 14.896 29.044 83.520 -0.127 -4.238 -1.280 O11 4IM 19 4IM O12 O11 O 0 1 N N N N N N 13.677 28.867 81.316 2.014 -2.943 -1.610 O12 4IM 20 4IM O13 O12 O 0 1 N N N N N N 14.793 26.822 82.331 1.989 -4.689 0.213 O13 4IM 21 4IM O51 O13 O 0 1 N N N N N N 6.280 29.992 81.551 -6.021 0.364 1.059 O51 4IM 22 4IM O52 O14 O 0 1 N N N N N N 8.635 30.050 80.635 -4.741 1.319 -0.896 O52 4IM 23 4IM O53 O15 O 0 1 N N N N N N 7.722 32.034 81.913 -4.953 -1.193 -0.770 O53 4IM 24 4IM P03 P4 P 0 1 N N N N N N 11.214 31.064 88.186 1.410 3.477 -0.614 P03 4IM 25 4IM O33 O16 O 0 1 N N N N N N 12.666 31.389 87.916 2.102 4.689 0.188 O33 4IM 26 4IM O32 O17 O 0 1 N N N N N N 10.974 30.588 89.603 2.499 2.774 -1.570 O32 4IM 27 4IM O31 O18 O 0 1 N N N N N N 10.281 32.153 87.708 0.297 4.002 -1.437 O31 4IM 28 4IM H1 H1 H 0 1 N N N N N N 8.921 29.030 85.438 -1.187 1.310 1.782 H1 4IM 29 4IM H2 H2 H 0 1 N N N N N N 11.420 30.774 85.525 -0.039 1.253 -1.046 H2 4IM 30 4IM H3 H3 H 0 1 N N N N N N 10.952 27.765 85.454 0.918 -0.018 1.559 H3 4IM 31 4IM H4 H4 H 0 1 N N N N N N 12.258 29.812 83.632 -0.129 -1.243 -1.032 H4 4IM 32 4IM H5 H5 H 0 1 N N N N N N 9.938 27.849 83.434 -1.278 -1.187 1.795 H5 4IM 33 4IM H6 H6 H 0 1 N N N N N N 10.231 30.898 83.406 -2.234 0.084 -0.810 H6 4IM 34 4IM H7 H7 H 0 1 N N N N N N 9.244 31.505 86.322 -2.863 2.599 0.670 H7 4IM 35 4IM H8 H8 H 0 1 N N N N N N 9.812 29.324 81.378 -3.043 -2.362 0.697 H8 4IM 36 4IM H9 H9 H 0 1 N N N N N N 12.811 25.458 85.712 5.566 -0.333 0.128 H9 4IM 37 4IM H10 H10 H 0 1 N N N N N N 14.524 27.389 88.351 3.669 2.049 0.962 H10 4IM 38 4IM H11 H11 H 0 1 N N N N N N 14.982 29.912 83.143 -0.737 -4.663 -0.661 H11 4IM 39 4IM H12 H12 H 0 1 N N N N N N 14.836 26.654 81.397 2.317 -5.403 -0.351 H12 4IM 40 4IM H13 H13 H 0 1 N N N N N N 6.246 29.428 80.788 -6.882 0.400 0.621 H13 4IM 41 4IM H14 H14 H 0 1 N N N N N N 8.355 32.416 81.316 -4.986 -1.982 -0.212 H14 4IM 42 4IM H15 H15 H 0 1 N N N N N N 12.727 32.234 87.487 2.469 5.379 -0.382 H15 4IM 43 4IM H16 H16 H 0 1 N N N N N N 10.247 31.069 89.980 3.258 2.407 -1.097 H16 4IM 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4IM O52 P05 DOUB N N 1 4IM O12 P01 DOUB N N 2 4IM O51 P05 SING N N 3 4IM P05 O53 SING N N 4 4IM P05 O05 SING N N 5 4IM O06 C06 SING N N 6 4IM O13 P01 SING N N 7 4IM P01 O01 SING N N 8 4IM P01 O11 SING N N 9 4IM O05 C05 SING N N 10 4IM C06 C05 SING N N 11 4IM C06 C01 SING N N 12 4IM O01 C01 SING N N 13 4IM C05 C04 SING N N 14 4IM C01 C02 SING N N 15 4IM C04 O04 SING N N 16 4IM C04 C03 SING N N 17 4IM C02 C03 SING N N 18 4IM C02 O02 SING N N 19 4IM C03 O03 SING N N 20 4IM O23 P02 DOUB N N 21 4IM O02 P02 SING N N 22 4IM O22 P02 SING N N 23 4IM P02 O21 SING N N 24 4IM O03 P03 SING N N 25 4IM O31 P03 DOUB N N 26 4IM O33 P03 SING N N 27 4IM P03 O32 SING N N 28 4IM C04 H1 SING N N 29 4IM C03 H2 SING N N 30 4IM C02 H3 SING N N 31 4IM C01 H4 SING N N 32 4IM C06 H5 SING N N 33 4IM C05 H6 SING N N 34 4IM O04 H7 SING N N 35 4IM O06 H8 SING N N 36 4IM O22 H9 SING N N 37 4IM O21 H10 SING N N 38 4IM O11 H11 SING N N 39 4IM O13 H12 SING N N 40 4IM O51 H13 SING N N 41 4IM O53 H14 SING N N 42 4IM O33 H15 SING N N 43 4IM O32 H16 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4IM InChI InChI 1.06 "InChI=1S/C6H16O18P4/c7-1-3(21-25(9,10)11)2(8)5(23-27(15,16)17)6(24-28(18,19)20)4(1)22-26(12,13)14/h1-8H,(H2,9,10,11)(H2,12,13,14)(H2,15,16,17)(H2,18,19,20)/t1-,2+,3-,4+,5-,6-" 4IM InChIKey InChI 1.06 CIPFCGZLFXVXBG-FAEUDGQSSA-N 4IM SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@H](O[P](O)(O)=O)[C@@H](O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O" 4IM SMILES CACTVS 3.385 "O[CH]1[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" 4IM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[C@H]1([C@H](C([C@H]([C@@H](C1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O" 4IM SMILES "OpenEye OEToolkits" 2.0.7 "C1(C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id 4IM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R},2~{S},4~{R},5~{S})-2,4-bis(oxidanyl)-3,5,6-triphosphonooxy-cyclohexyl] dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 4IM _pdbx_chem_comp_synonyms.name "[(1R,2S,4R,5S)-2,4-bis(oxidanyl)-3,5,6-triphosphonooxy-cyclohexyl] dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4IM "Create component" 2023-07-12 PDBE 4IM "Initial release" 2024-02-28 RCSB #