data_4IU # _chem_comp.id 4IU _chem_comp.name "2-[[(2R,3R,4R)-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2H-pyran-4-yl]oxymethyl]-3-methyl-benzimidazole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-02 _chem_comp.pdbx_modified_date 2021-12-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4IU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P1M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4IU O4 O1 O 0 1 N N N 4.146 -0.623 6.525 -7.305 -0.608 -0.989 O4 4IU 1 4IU C15 C1 C 0 1 N N N 4.216 -1.576 5.766 -6.280 0.258 -0.865 C15 4IU 2 4IU O5 O2 O 0 1 N N N 3.368 -1.585 4.726 -6.417 1.415 -1.211 O5 4IU 3 4IU C12 C2 C 0 1 Y N N 5.228 -2.685 5.964 -4.993 -0.197 -0.308 C12 4IU 4 4IU C11 C3 C 0 1 Y N N 5.464 -3.573 4.884 -4.834 -1.534 0.085 C11 4IU 5 4IU C10 C4 C 0 1 Y N N 6.425 -4.569 4.995 -3.651 -1.967 0.601 C10 4IU 6 4IU C8 C5 C 0 1 Y N N 7.156 -4.765 6.166 -2.579 -1.077 0.742 C8 4IU 7 4IU N N1 N 0 1 Y N N 8.144 -5.610 6.603 -1.313 -1.210 1.208 N 4IU 8 4IU C13 C6 C 0 1 Y N N 5.939 -2.818 7.126 -3.934 0.700 -0.179 C13 4IU 9 4IU C9 C7 C 0 1 Y N N 6.918 -3.817 7.264 -2.730 0.266 0.348 C9 4IU 10 4IU N1 N2 N 0 1 Y N N 7.736 -4.197 8.243 -1.519 0.877 0.608 N1 4IU 11 4IU C14 C8 C 0 1 N N N 7.853 -3.519 9.528 -1.186 2.283 0.364 C14 4IU 12 4IU C7 C9 C 0 1 Y N N 8.469 -5.255 7.860 -0.694 -0.067 1.130 C7 4IU 13 4IU C6 C10 C 0 1 N N N 9.491 -5.928 8.680 0.731 0.173 1.557 C6 4IU 14 4IU O3 O3 O 0 1 N N N 10.673 -5.153 8.698 1.606 -0.066 0.453 O3 4IU 15 4IU C1 C11 C 0 1 N N R 11.658 -5.818 9.464 2.989 0.135 0.753 C1 4IU 16 4IU C2 C12 C 0 1 N N N 11.559 -5.404 10.911 3.360 1.566 0.474 C2 4IU 17 4IU C3 C13 C 0 1 N N N 12.683 -5.309 11.611 4.475 1.898 -0.122 C3 4IU 18 4IU O O4 O 0 1 N N N 13.994 -5.634 11.065 5.387 0.997 -0.548 O 4IU 19 4IU C4 C14 C 0 1 N N R 14.152 -6.109 9.753 5.302 -0.331 -0.024 C4 4IU 20 4IU C C15 C 0 1 N N R 13.029 -5.543 8.916 3.841 -0.793 -0.120 C 4IU 21 4IU O2 O5 O 0 1 N N N 13.114 -4.095 8.870 3.400 -0.719 -1.477 O2 4IU 22 4IU C5 C16 C 0 1 N N N 15.497 -5.851 9.177 6.194 -1.267 -0.843 C5 4IU 23 4IU O1 O6 O 0 1 N N N 16.510 -6.481 9.929 7.561 -0.886 -0.679 O1 4IU 24 4IU H1 H1 H 0 1 N N N 3.468 -0.029 6.226 -8.129 -0.263 -1.360 H1 4IU 25 4IU H2 H2 H 0 1 N N N 4.894 -3.474 3.972 -5.657 -2.225 -0.021 H2 4IU 26 4IU H3 H3 H 0 1 N N N 6.612 -5.212 4.148 -3.539 -2.998 0.902 H3 4IU 27 4IU H4 H4 H 0 1 N N N 5.745 -2.146 7.949 -4.053 1.729 -0.486 H4 4IU 28 4IU H5 H5 H 0 1 N N N 8.598 -4.037 10.150 -1.427 2.872 1.249 H5 4IU 29 4IU H6 H6 H 0 1 N N N 8.171 -2.479 9.366 -0.121 2.372 0.147 H6 4IU 30 4IU H7 H7 H 0 1 N N N 6.878 -3.529 10.038 -1.761 2.651 -0.485 H7 4IU 31 4IU H8 H8 H 0 1 N N N 9.116 -6.047 9.707 0.841 1.204 1.892 H8 4IU 32 4IU H9 H9 H 0 1 N N N 9.709 -6.918 8.253 0.984 -0.503 2.374 H9 4IU 33 4IU H10 H10 H 0 1 N N N 11.483 -6.903 9.411 3.169 -0.089 1.805 H10 4IU 34 4IU H11 H11 H 0 1 N N N 10.602 -5.191 11.364 2.680 2.348 0.777 H11 4IU 35 4IU H12 H12 H 0 1 N N N 12.623 -4.974 12.636 4.677 2.947 -0.282 H12 4IU 36 4IU H13 H13 H 0 1 N N N 14.014 -7.200 9.769 5.622 -0.337 1.018 H13 4IU 37 4IU H14 H14 H 0 1 N N N 13.099 -5.953 7.898 3.755 -1.818 0.240 H14 4IU 38 4IU H15 H15 H 0 1 N N N 13.963 -3.838 8.530 2.477 -0.978 -1.605 H15 4IU 39 4IU H16 H16 H 0 1 N N N 15.525 -6.236 8.147 6.059 -2.292 -0.498 H16 4IU 40 4IU H17 H17 H 0 1 N N N 15.680 -4.766 9.168 5.922 -1.199 -1.896 H17 4IU 41 4IU H18 H18 H 0 1 N N N 17.356 -6.298 9.537 8.185 -1.437 -1.171 H18 4IU 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4IU O5 C15 DOUB N N 1 4IU C11 C10 DOUB Y N 2 4IU C11 C12 SING Y N 3 4IU C10 C8 SING Y N 4 4IU C15 C12 SING N N 5 4IU C15 O4 SING N N 6 4IU C12 C13 DOUB Y N 7 4IU C8 N SING Y N 8 4IU C8 C9 DOUB Y N 9 4IU N C7 DOUB Y N 10 4IU C13 C9 SING Y N 11 4IU C9 N1 SING Y N 12 4IU C7 N1 SING Y N 13 4IU C7 C6 SING N N 14 4IU N1 C14 SING N N 15 4IU C6 O3 SING N N 16 4IU O3 C1 SING N N 17 4IU O2 C SING N N 18 4IU C C1 SING N N 19 4IU C C4 SING N N 20 4IU C5 C4 SING N N 21 4IU C5 O1 SING N N 22 4IU C1 C2 SING N N 23 4IU C4 O SING N N 24 4IU C2 C3 DOUB N N 25 4IU O C3 SING N N 26 4IU O4 H1 SING N N 27 4IU C11 H2 SING N N 28 4IU C10 H3 SING N N 29 4IU C13 H4 SING N N 30 4IU C14 H5 SING N N 31 4IU C14 H6 SING N N 32 4IU C14 H7 SING N N 33 4IU C6 H8 SING N N 34 4IU C6 H9 SING N N 35 4IU C1 H10 SING N N 36 4IU C2 H11 SING N N 37 4IU C3 H12 SING N N 38 4IU C4 H13 SING N N 39 4IU C H14 SING N N 40 4IU O2 H15 SING N N 41 4IU C5 H16 SING N N 42 4IU C5 H17 SING N N 43 4IU O1 H18 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4IU InChI InChI 1.03 "InChI=1S/C16H18N2O6/c1-18-11-6-9(16(21)22)2-3-10(11)17-14(18)8-24-12-4-5-23-13(7-19)15(12)20/h2-6,12-13,15,19-20H,7-8H2,1H3,(H,21,22)/t12-,13-,15-/m1/s1" 4IU InChIKey InChI 1.03 QQZYRRIGHJNGGY-UMVBOHGHSA-N 4IU SMILES_CANONICAL CACTVS 3.385 "Cn1c(CO[C@@H]2C=CO[C@H](CO)[C@@H]2O)nc3ccc(cc13)C(O)=O" 4IU SMILES CACTVS 3.385 "Cn1c(CO[CH]2C=CO[CH](CO)[CH]2O)nc3ccc(cc13)C(O)=O" 4IU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2nc1CO[C@@H]3C=CO[C@@H]([C@@H]3O)CO)C(=O)O" 4IU SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c2cc(ccc2nc1COC3C=COC(C3O)CO)C(=O)O" # _pdbx_chem_comp_identifier.comp_id 4IU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]-3-methyl-benzimidazole-5-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4IU "Create component" 2021-07-02 PDBE 4IU "Initial release" 2021-12-15 RCSB ##