data_4IW # _chem_comp.id 4IW _chem_comp.name "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]diselanyl}oxane-3,4,5-triol (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 O10 Se2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-12 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.217 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4IW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RDO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4IW C1 C1 C 0 1 N N S 19.143 -9.159 -1.696 2.472 0.065 -0.631 C1 4IW 1 4IW C2 C2 C 0 1 N N R 17.658 -9.279 -1.384 3.572 1.130 -0.630 C2 4IW 2 4IW C3 C3 C 0 1 N N S 17.026 -7.905 -1.449 4.939 0.442 -0.570 C3 4IW 3 4IW C4 C4 C 0 1 N N R 17.687 -6.930 -0.495 4.994 -0.451 0.674 C4 4IW 4 4IW C5 C5 C 0 1 N N R 19.169 -6.885 -0.781 3.839 -1.455 0.623 C5 4IW 5 4IW C6 C6 C 0 1 N N N 19.872 -6.074 0.277 3.852 -2.312 1.891 C6 4IW 6 4IW O2 O1 O 0 1 N N N 17.053 -10.076 -2.376 3.481 1.910 -1.824 O2 4IW 7 4IW O3 O2 O 0 1 N N N 15.604 -8.014 -1.167 5.969 1.430 -0.495 O3 4IW 8 4IW O4 O3 O 0 1 N N N 17.446 -7.300 0.894 4.873 0.356 1.847 O4 4IW 9 4IW O5 O4 O 0 1 N N N 19.712 -8.226 -0.731 2.600 -0.750 0.536 O5 4IW 10 4IW O6 O5 O 0 1 N N N 21.225 -5.837 -0.123 2.848 -3.323 1.792 O6 4IW 11 4IW SE1 SE1 SE 0 0 N N N 20.005 -10.750 -1.624 0.717 0.937 -0.631 SE1 4IW 12 4IW SE2 SE2 SE 0 0 N N N 19.395 -11.818 0.103 -0.717 -0.937 -0.631 SE2 4IW 13 4IW CAO C7 C 0 1 N N S 18.060 -12.815 -0.506 -2.472 -0.065 -0.631 CAO 4IW 14 4IW OAP O6 O 0 1 N N N 17.247 -12.847 0.626 -2.599 0.750 0.536 OAP 4IW 15 4IW CAQ C8 C 0 1 N N R 16.004 -13.588 0.402 -3.839 1.455 0.623 CAQ 4IW 16 4IW CAW C9 C 0 1 N N N 15.328 -13.632 1.784 -3.851 2.312 1.891 CAW 4IW 17 4IW OAX O7 O 0 1 N N N 15.982 -12.668 2.640 -2.847 3.323 1.791 OAX 4IW 18 4IW CAR C10 C 0 1 N N R 16.259 -15.019 -0.239 -4.994 0.451 0.674 CAR 4IW 19 4IW OAV O8 O 0 1 N N N 15.615 -16.087 0.489 -4.873 -0.356 1.847 OAV 4IW 20 4IW CAS C11 C 0 1 N N S 17.755 -15.356 -0.297 -4.939 -0.442 -0.569 CAS 4IW 21 4IW OAU O9 O 0 1 N N N 18.263 -15.592 1.045 -5.969 -1.430 -0.494 OAU 4IW 22 4IW CAN C12 C 0 1 N N R 18.547 -14.223 -0.959 -3.572 -1.130 -0.630 CAN 4IW 23 4IW OAT O10 O 0 1 N N N 18.422 -14.347 -2.375 -3.483 -1.910 -1.824 OAT 4IW 24 4IW H1 H1 H 0 1 N N N 19.275 -8.781 -2.721 2.569 -0.557 -1.521 H1 4IW 25 4IW H2 H2 H 0 1 N N N 17.520 -9.709 -0.381 3.451 1.778 0.238 H2 4IW 26 4IW H3 H3 H 0 1 N N N 17.155 -7.520 -2.471 5.081 -0.166 -1.463 H3 4IW 27 4IW H4 H4 H 0 1 N N N 17.268 -5.930 -0.678 5.943 -0.987 0.696 H4 4IW 28 4IW H5 H5 H 0 1 N N N 19.342 -6.435 -1.770 3.954 -2.097 -0.250 H5 4IW 29 4IW H6 H6 H 0 1 N N N 19.354 -5.112 0.406 4.830 -2.780 2.003 H6 4IW 30 4IW H7 H7 H 0 1 N N N 19.862 -6.626 1.228 3.649 -1.681 2.757 H7 4IW 31 4IW H8 H8 H 0 1 N N N 16.124 -10.159 -2.193 2.638 2.371 -1.929 H8 4IW 32 4IW H9 H9 H 0 1 N N N 15.206 -7.152 -1.207 5.988 2.035 -1.248 H9 4IW 33 4IW H10 H10 H 0 1 N N N 17.871 -6.673 1.467 5.571 1.019 1.941 H10 4IW 34 4IW H11 H11 H 0 1 N N N 21.668 -5.326 0.544 2.798 -3.905 2.563 H11 4IW 35 4IW H12 H12 H 0 1 N N N 17.598 -12.280 -1.349 -2.569 0.557 -1.521 H12 4IW 36 4IW H13 H13 H 0 1 N N N 15.358 -13.021 -0.284 -3.954 2.097 -0.251 H13 4IW 37 4IW H14 H14 H 0 1 N N N 14.262 -13.379 1.685 -4.829 2.780 2.003 H14 4IW 38 4IW H15 H15 H 0 1 N N N 15.427 -14.639 2.215 -3.648 1.682 2.757 H15 4IW 39 4IW H16 H16 H 0 1 N N N 15.577 -12.681 3.499 -2.797 3.905 2.562 H16 4IW 40 4IW H17 H17 H 0 1 N N N 15.873 -14.995 -1.269 -5.942 0.988 0.697 H17 4IW 41 4IW H18 H18 H 0 1 N N N 14.683 -15.914 0.547 -5.573 -1.016 1.945 H18 4IW 42 4IW H19 H19 H 0 1 N N N 17.882 -16.267 -0.901 -5.082 0.167 -1.462 H19 4IW 43 4IW H20 H20 H 0 1 N N N 17.770 -16.295 1.452 -5.993 -2.031 -1.250 H20 4IW 44 4IW H21 H21 H 0 1 N N N 19.603 -14.326 -0.670 -3.451 -1.778 0.238 H21 4IW 45 4IW H22 H22 H 0 1 N N N 18.720 -15.207 -2.646 -2.639 -2.371 -1.931 H22 4IW 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4IW O2 C2 SING N N 1 4IW OAT CAN SING N N 2 4IW C1 SE1 SING N N 3 4IW C1 C2 SING N N 4 4IW C1 O5 SING N N 5 4IW SE1 SE2 SING N N 6 4IW C3 C2 SING N N 7 4IW C3 O3 SING N N 8 4IW C3 C4 SING N N 9 4IW CAN CAO SING N N 10 4IW CAN CAS SING N N 11 4IW C5 O5 SING N N 12 4IW C5 C4 SING N N 13 4IW C5 C6 SING N N 14 4IW CAO SE2 SING N N 15 4IW CAO OAP SING N N 16 4IW C4 O4 SING N N 17 4IW CAS CAR SING N N 18 4IW CAS OAU SING N N 19 4IW CAR CAQ SING N N 20 4IW CAR OAV SING N N 21 4IW O6 C6 SING N N 22 4IW CAQ OAP SING N N 23 4IW CAQ CAW SING N N 24 4IW CAW OAX SING N N 25 4IW C1 H1 SING N N 26 4IW C2 H2 SING N N 27 4IW C3 H3 SING N N 28 4IW C4 H4 SING N N 29 4IW C5 H5 SING N N 30 4IW C6 H6 SING N N 31 4IW C6 H7 SING N N 32 4IW O2 H8 SING N N 33 4IW O3 H9 SING N N 34 4IW O4 H10 SING N N 35 4IW O6 H11 SING N N 36 4IW CAO H12 SING N N 37 4IW CAQ H13 SING N N 38 4IW CAW H14 SING N N 39 4IW CAW H15 SING N N 40 4IW OAX H16 SING N N 41 4IW CAR H17 SING N N 42 4IW OAV H18 SING N N 43 4IW CAS H19 SING N N 44 4IW OAU H20 SING N N 45 4IW CAN H21 SING N N 46 4IW OAT H22 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4IW SMILES ACDLabs 12.01 "OC1C([Se][Se]C2OC(CO)C(O)C(O)C2O)OC(CO)C(O)C1O" 4IW InChI InChI 1.03 "InChI=1S/C12H22O10Se2/c13-1-3-5(15)7(17)9(19)11(21-3)23-24-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5+,6+,7+,8+,9-,10-,11+,12+/m1/s1" 4IW InChIKey InChI 1.03 YPCORAJAZUQWFF-ZFDCCPEWSA-N 4IW SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H]([Se][Se][C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O" 4IW SMILES CACTVS 3.385 "OC[CH]1O[CH]([Se][Se][CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O" 4IW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)[Se][Se][C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)O" 4IW SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)[Se][Se]C2C(C(C(C(O2)CO)O)O)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4IW "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]diselanyl}oxane-3,4,5-triol (non-preferred name)" 4IW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]diselanyl]oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4IW "Create component" 2021-07-12 RCSB 4IW "Initial release" 2022-07-13 RCSB #