data_4IX # _chem_comp.id 4IX _chem_comp.name "(2R,3R,4S,5S,6R)-2-[4-[1-[3-[6-[(Z)-hydroxyiminomethyl]-5-oxidanyl-pyridin-2-yl]propyl]-1,2,3-triazol-4-yl]butoxy]-6-(hydroxymethyl)oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H31 N5 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-02 _chem_comp.pdbx_modified_date 2021-12-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4IX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P1P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4IX C02 C1 C 0 1 N N N 101.416 -80.240 -2.904 8.043 2.648 -0.376 C02 4IX 1 4IX C03 C2 C 0 1 N N R 100.085 -80.772 -2.572 7.894 1.272 0.277 C03 4IX 2 4IX C05 C3 C 0 1 N N R 99.132 -82.225 -0.841 6.470 -0.656 0.344 C05 4IX 3 4IX C07 C4 C 0 1 N N N 99.364 -82.697 1.410 4.090 -0.452 0.141 C07 4IX 4 4IX C08 C5 C 0 1 N N N 97.951 -82.722 2.143 2.865 -1.113 -0.494 C08 4IX 5 4IX C09 C6 C 0 1 N N N 97.758 -84.013 2.953 1.609 -0.320 -0.126 C09 4IX 6 4IX C10 C7 C 0 1 N N N 96.818 -83.790 4.150 0.385 -0.981 -0.762 C10 4IX 7 4IX C11 C8 C 0 1 Y N N 95.311 -83.876 3.772 -0.853 -0.201 -0.399 C11 4IX 8 4IX C12 C9 C 0 1 Y N N 94.361 -84.655 4.421 -1.760 0.323 -1.256 C12 4IX 9 4IX C14 C10 C 0 1 N N N 91.935 -85.113 4.212 -3.877 1.643 -0.981 C14 4IX 10 4IX C15 C11 C 0 1 N N N 91.625 -84.774 5.737 -5.131 1.056 -0.329 C15 4IX 11 4IX C16 C12 C 0 1 N N N 92.179 -85.870 6.684 -6.367 1.797 -0.842 C16 4IX 12 4IX C17 C13 C 0 1 Y N N 91.252 -87.105 6.752 -7.602 1.219 -0.200 C17 4IX 13 4IX C18 C14 C 0 1 Y N N 91.182 -87.987 5.678 -8.474 2.056 0.476 C18 4IX 14 4IX C19 C15 C 0 1 Y N N 90.347 -89.109 5.719 -9.609 1.525 1.066 C19 4IX 15 4IX C20 C16 C 0 1 Y N N 89.583 -89.310 6.896 -9.834 0.157 0.958 C20 4IX 16 4IX C22 C17 C 0 1 Y N N 89.691 -88.402 7.942 -8.909 -0.628 0.259 C22 4IX 17 4IX C23 C18 C 0 1 N N N 88.836 -88.637 9.242 -9.129 -2.082 0.132 C23 4IX 18 4IX C29 C19 C 0 1 N N R 97.821 -81.607 -1.355 7.637 -1.590 0.017 C29 4IX 19 4IX C31 C20 C 0 1 N N S 97.939 -80.119 -1.502 8.936 -0.979 0.554 C31 4IX 20 4IX C33 C21 C 0 1 N N S 99.304 -79.675 -1.842 9.120 0.415 -0.052 C33 4IX 21 4IX N13 N1 N 0 1 Y N N 93.194 -84.462 3.820 -2.694 0.933 -0.489 N13 4IX 22 4IX N24 N2 N 0 1 N N N 89.034 -89.672 9.967 -8.277 -2.811 -0.512 N24 4IX 23 4IX N26 N3 N 0 1 Y N N 90.501 -87.343 7.852 -7.837 -0.072 -0.295 N26 4IX 24 4IX N27 N4 N 0 1 Y N N 93.360 -83.593 2.811 -2.363 0.783 0.746 N27 4IX 25 4IX N28 N5 N 0 1 Y N N 94.691 -83.226 2.787 -1.273 0.106 0.834 N28 4IX 26 4IX O01 O1 O 0 1 N N N 101.765 -80.671 -4.187 6.958 3.486 0.026 O01 4IX 27 4IX O04 O2 O 0 1 N N N 100.265 -81.995 -1.742 6.719 0.632 -0.223 O04 4IX 28 4IX O06 O3 O 0 1 N N N 99.366 -81.681 0.406 5.263 -1.192 -0.203 O06 4IX 29 4IX O21 O4 O 0 1 N N N 88.736 -90.408 7.000 -10.933 -0.408 1.521 O21 4IX 30 4IX O25 O5 O 0 1 N N N 90.013 -90.612 9.619 -7.133 -2.215 -1.095 O25 4IX 31 4IX O30 O6 O 0 1 N N N 97.478 -82.168 -2.621 7.418 -2.862 0.631 O30 4IX 32 4IX O32 O7 O 0 1 N N N 97.525 -79.465 -0.257 10.041 -1.809 0.190 O32 4IX 33 4IX O34 O8 O 0 1 N N N 99.197 -78.524 -2.689 10.290 1.024 0.496 O34 4IX 34 4IX H021 H1 H 0 0 N N N 102.154 -80.609 -2.176 8.986 3.098 -0.064 H021 4IX 35 4IX H022 H2 H 0 0 N N N 101.392 -79.141 -2.877 8.035 2.538 -1.461 H022 4IX 36 4IX H031 H3 H 0 0 N N N 99.550 -81.033 -3.497 7.813 1.390 1.357 H031 4IX 37 4IX H051 H4 H 0 0 N N N 98.974 -83.310 -0.748 6.369 -0.563 1.426 H051 4IX 38 4IX H072 H5 H 0 0 N N N 99.551 -83.675 0.942 4.184 0.570 -0.227 H072 4IX 39 4IX H071 H6 H 0 0 N N N 100.154 -82.486 2.146 3.974 -0.438 1.225 H071 4IX 40 4IX H082 H7 H 0 0 N N N 97.886 -81.860 2.824 2.981 -1.127 -1.578 H082 4IX 41 4IX H081 H8 H 0 0 N N N 97.155 -82.652 1.387 2.772 -2.134 -0.126 H081 4IX 42 4IX H091 H9 H 0 0 N N N 97.327 -84.785 2.299 1.493 -0.307 0.958 H091 4IX 43 4IX H092 H10 H 0 0 N N N 98.736 -84.352 3.325 1.703 0.701 -0.494 H092 4IX 44 4IX H101 H11 H 0 0 N N N 97.032 -84.556 4.910 0.501 -0.995 -1.845 H101 4IX 45 4IX H102 H12 H 0 0 N N N 97.017 -82.793 4.569 0.291 -2.003 -0.393 H102 4IX 46 4IX H121 H13 H 0 0 N N N 94.541 -85.303 5.266 -1.742 0.265 -2.334 H121 4IX 47 4IX H141 H14 H 0 0 N N N 91.116 -84.742 3.578 -3.944 1.531 -2.063 H141 4IX 48 4IX H142 H15 H 0 0 N N N 92.030 -86.202 4.089 -3.798 2.700 -0.729 H142 4IX 49 4IX H152 H16 H 0 0 N N N 92.092 -83.811 5.992 -5.210 -0.002 -0.581 H152 4IX 50 4IX H151 H17 H 0 0 N N N 90.536 -84.700 5.873 -5.064 1.167 0.753 H151 4IX 51 4IX H161 H18 H 0 0 N N N 93.167 -86.188 6.319 -6.287 2.854 -0.590 H161 4IX 52 4IX H162 H19 H 0 0 N N N 92.281 -85.447 7.694 -6.434 1.685 -1.924 H162 4IX 53 4IX H181 H20 H 0 0 N N N 91.782 -87.803 4.799 -8.271 3.115 0.543 H181 4IX 54 4IX H191 H21 H 0 0 N N N 90.287 -89.795 4.887 -10.303 2.158 1.599 H191 4IX 55 4IX H231 H22 H 0 0 N N N 88.078 -87.921 9.523 -10.001 -2.537 0.578 H231 4IX 56 4IX H291 H23 H 0 0 N N N 97.028 -81.827 -0.625 7.713 -1.715 -1.063 H291 4IX 57 4IX H311 H24 H 0 0 N N N 97.260 -79.800 -2.307 8.880 -0.902 1.640 H311 4IX 58 4IX H331 H25 H 0 0 N N N 99.843 -79.414 -0.920 9.225 0.331 -1.134 H331 4IX 59 4IX H011 H26 H 0 0 N N N 102.624 -80.333 -4.412 6.988 4.376 -0.352 H011 4IX 60 4IX H211 H27 H 0 0 N N N 88.302 -90.394 7.845 -11.702 -0.439 0.936 H211 4IX 61 4IX H251 H28 H 0 0 N N N 90.025 -91.311 10.262 -6.555 -2.839 -1.556 H251 4IX 62 4IX H301 H29 H 0 0 N N N 97.401 -83.111 -2.539 6.609 -3.305 0.340 H301 4IX 63 4IX H321 H30 H 0 0 N N N 96.646 -79.745 -0.029 9.986 -2.710 0.535 H321 4IX 64 4IX H341 H31 H 0 0 N N N 98.713 -77.842 -2.238 11.106 0.534 0.326 H341 4IX 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4IX O01 C02 SING N N 1 4IX C02 C03 SING N N 2 4IX O34 C33 SING N N 3 4IX O30 C29 SING N N 4 4IX C03 C33 SING N N 5 4IX C03 O04 SING N N 6 4IX C33 C31 SING N N 7 4IX O04 C05 SING N N 8 4IX C31 C29 SING N N 9 4IX C31 O32 SING N N 10 4IX C29 C05 SING N N 11 4IX C05 O06 SING N N 12 4IX O06 C07 SING N N 13 4IX C07 C08 SING N N 14 4IX C08 C09 SING N N 15 4IX N28 N27 DOUB Y N 16 4IX N28 C11 SING Y N 17 4IX N27 N13 SING Y N 18 4IX C09 C10 SING N N 19 4IX C11 C10 SING N N 20 4IX C11 C12 DOUB Y N 21 4IX N13 C14 SING N N 22 4IX N13 C12 SING Y N 23 4IX C14 C15 SING N N 24 4IX C18 C19 DOUB Y N 25 4IX C18 C17 SING Y N 26 4IX C19 C20 SING Y N 27 4IX C15 C16 SING N N 28 4IX C16 C17 SING N N 29 4IX C17 N26 DOUB Y N 30 4IX C20 O21 SING N N 31 4IX C20 C22 DOUB Y N 32 4IX N26 C22 SING Y N 33 4IX C22 C23 SING N N 34 4IX C23 N24 DOUB N Z 35 4IX O25 N24 SING N N 36 4IX C02 H021 SING N N 37 4IX C02 H022 SING N N 38 4IX C03 H031 SING N N 39 4IX C05 H051 SING N N 40 4IX C07 H072 SING N N 41 4IX C07 H071 SING N N 42 4IX C08 H082 SING N N 43 4IX C08 H081 SING N N 44 4IX C09 H091 SING N N 45 4IX C09 H092 SING N N 46 4IX C10 H101 SING N N 47 4IX C10 H102 SING N N 48 4IX C12 H121 SING N N 49 4IX C14 H141 SING N N 50 4IX C14 H142 SING N N 51 4IX C15 H152 SING N N 52 4IX C15 H151 SING N N 53 4IX C16 H161 SING N N 54 4IX C16 H162 SING N N 55 4IX C18 H181 SING N N 56 4IX C19 H191 SING N N 57 4IX C23 H231 SING N N 58 4IX C29 H291 SING N N 59 4IX C31 H311 SING N N 60 4IX C33 H331 SING N N 61 4IX O01 H011 SING N N 62 4IX O21 H211 SING N N 63 4IX O25 H251 SING N N 64 4IX O30 H301 SING N N 65 4IX O32 H321 SING N N 66 4IX O34 H341 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4IX InChI InChI 1.03 "InChI=1S/C21H31N5O8/c27-12-17-18(29)19(30)20(31)21(34-17)33-9-2-1-4-14-11-26(25-24-14)8-3-5-13-6-7-16(28)15(23-13)10-22-32/h6-7,10-11,17-21,27-32H,1-5,8-9,12H2/b22-10-/t17-,18-,19+,20-,21-/m1/s1" 4IX InChIKey InChI 1.03 XSKZXNAZWMWYGQ-WXHIOXNPSA-N 4IX SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](OCCCCc2cn(CCCc3ccc(O)c(\C=N/O)n3)nn2)[C@H](O)[C@@H](O)[C@@H]1O" 4IX SMILES CACTVS 3.385 "OC[CH]1O[CH](OCCCCc2cn(CCCc3ccc(O)c(C=NO)n3)nn2)[CH](O)[CH](O)[CH]1O" 4IX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(nc1CCCn2cc(nn2)CCCCO[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)/C=N\O)O" 4IX SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(nc1CCCn2cc(nn2)CCCCOC3C(C(C(C(O3)CO)O)O)O)C=NO)O" # _pdbx_chem_comp_identifier.comp_id 4IX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[4-[1-[3-[6-[(~{Z})-hydroxyiminomethyl]-5-oxidanyl-pyridin-2-yl]propyl]-1,2,3-triazol-4-yl]butoxy]-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4IX "Create component" 2021-07-02 PDBE 4IX "Initial release" 2021-12-29 RCSB ##