data_4IZ # _chem_comp.id 4IZ _chem_comp.name "beta-D-galactopyranosyl 1-seleno-beta-D-galactopyranoside" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H22 O10 Se" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-12 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.257 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4IZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RDP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4IZ C4 C1 C 0 1 N N R 18.210 -6.922 -0.596 4.062 -0.789 0.201 C4 4IZ 1 4IZ C5 C2 C 0 1 N N R 19.753 -6.730 -0.837 2.749 -1.508 0.522 C5 4IZ 2 4IZ C6 C3 C 0 1 N N N 20.344 -5.602 0.019 2.923 -2.345 1.791 C6 4IZ 3 4IZ C3 C4 C 0 1 N N S 17.721 -8.092 -1.458 3.864 0.093 -1.035 C3 4IZ 4 4IZ O2 O1 O 0 1 N N N 18.141 -10.374 -2.035 2.475 1.852 -1.944 O2 4IZ 5 4IZ C2 C5 C 0 1 N N R 18.518 -9.335 -1.151 2.716 1.073 -0.771 C2 4IZ 6 4IZ O3 O2 O 0 1 N N N 16.390 -8.350 -1.183 5.064 0.823 -1.298 O3 4IZ 7 4IZ O4 O3 O 0 1 N N N 17.929 -7.193 0.798 4.445 0.024 1.312 O4 4IZ 8 4IZ O6 O4 O 0 1 N N N 21.765 -5.518 -0.156 1.736 -3.106 2.026 O6 4IZ 9 4IZ O5 O5 O 0 1 N N N 20.442 -7.973 -0.490 1.716 -0.542 0.727 O5 4IZ 10 4IZ C1 C6 C 0 1 N N S 20.025 -9.070 -1.295 1.454 0.283 -0.413 C1 4IZ 11 4IZ SE1 SE1 SE 0 0 N N N 21.045 -10.639 -0.615 -0.001 1.529 0.001 SE1 4IZ 12 4IZ CAN C7 C 0 1 N N S 22.805 -9.990 -0.807 -1.455 0.282 0.414 CAN 4IZ 13 4IZ OAO O6 O 0 1 N N N 23.444 -10.676 -1.926 -1.716 -0.539 -0.726 OAO 4IZ 14 4IZ CAP C8 C 0 1 N N R 24.799 -10.217 -2.165 -2.748 -1.507 -0.524 CAP 4IZ 15 4IZ CAV C9 C 0 1 N N N 25.285 -11.112 -3.313 -2.920 -2.343 -1.794 CAV 4IZ 16 4IZ OAW O7 O 0 1 N N N 24.457 -10.733 -4.424 -1.732 -3.101 -2.030 OAW 4IZ 17 4IZ CAQ C10 C 0 1 N N R 25.679 -10.442 -0.978 -4.062 -0.790 -0.203 CAQ 4IZ 18 4IZ OAU O8 O 0 1 N N N 25.804 -11.859 -0.637 -4.446 0.024 -1.312 OAU 4IZ 19 4IZ CAR C11 C 0 1 N N S 25.028 -9.743 0.210 -3.865 0.090 1.035 CAR 4IZ 20 4IZ OAT O9 O 0 1 N N N 25.832 -10.048 1.316 -5.065 0.819 1.299 OAT 4IZ 21 4IZ CAM C12 C 0 1 N N R 23.653 -10.247 0.458 -2.717 1.071 0.773 CAM 4IZ 22 4IZ OAS O10 O 0 1 N N N 23.142 -9.578 1.620 -2.476 1.849 1.947 OAS 4IZ 23 4IZ H1 H1 H 0 1 N N N 17.692 -6.005 -0.914 4.841 -1.525 0.003 H1 4IZ 24 4IZ H2 H2 H 0 1 N N N 19.914 -6.495 -1.900 2.478 -2.159 -0.309 H2 4IZ 25 4IZ H3 H3 H 0 1 N N N 19.887 -4.647 -0.279 3.769 -3.021 1.667 H3 4IZ 26 4IZ H4 H4 H 0 1 N N N 20.123 -5.800 1.078 3.105 -1.686 2.640 H4 4IZ 27 4IZ H5 H5 H 0 1 N N N 17.858 -7.831 -2.518 3.622 -0.532 -1.894 H5 4IZ 28 4IZ H6 H6 H 0 1 N N N 18.645 -11.155 -1.839 1.759 2.495 -1.849 H6 4IZ 29 4IZ H7 H7 H 0 1 N N N 18.317 -9.635 -0.112 2.982 1.731 0.055 H7 4IZ 30 4IZ H8 H8 H 0 1 N N N 15.872 -7.576 -1.371 5.008 1.409 -2.066 H8 4IZ 31 4IZ H9 H9 H 0 1 N N N 18.233 -6.467 1.330 5.270 0.511 1.177 H9 4IZ 32 4IZ H10 H10 H 0 1 N N N 22.110 -4.815 0.382 1.775 -3.662 2.816 H10 4IZ 33 4IZ H11 H11 H 0 1 N N N 20.308 -8.956 -2.352 1.167 -0.344 -1.257 H11 4IZ 34 4IZ H12 H12 H 0 1 N N N 22.719 -8.909 -0.994 -1.167 -0.346 1.256 H12 4IZ 35 4IZ H13 H13 H 0 1 N N N 24.818 -9.161 -2.471 -2.477 -2.159 0.306 H13 4IZ 36 4IZ H14 H14 H 0 1 N N N 25.145 -12.175 -3.066 -3.765 -3.020 -1.671 H14 4IZ 37 4IZ H15 H15 H 0 1 N N N 26.346 -10.923 -3.534 -3.104 -1.682 -2.641 H15 4IZ 38 4IZ H16 H16 H 0 1 N N N 24.695 -11.247 -5.187 -1.770 -3.655 -2.821 H16 4IZ 39 4IZ H17 H17 H 0 1 N N N 26.672 -10.005 -1.161 -4.840 -1.528 -0.005 H17 4IZ 40 4IZ H18 H18 H 0 1 N N N 26.370 -11.954 0.120 -5.272 0.508 -1.178 H18 4IZ 41 4IZ H19 H19 H 0 1 N N N 25.002 -8.659 0.026 -3.621 -0.536 1.893 H19 4IZ 42 4IZ H20 H20 H 0 1 N N N 25.472 -9.636 2.093 -5.011 1.399 2.071 H20 4IZ 43 4IZ H21 H21 H 0 1 N N N 23.692 -11.332 0.637 -2.983 1.729 -0.054 H21 4IZ 44 4IZ H22 H22 H 0 1 N N N 23.698 -9.769 2.366 -1.757 2.489 1.853 H22 4IZ 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4IZ OAW CAV SING N N 1 4IZ CAV CAP SING N N 2 4IZ CAP OAO SING N N 3 4IZ CAP CAQ SING N N 4 4IZ O2 C2 SING N N 5 4IZ OAO CAN SING N N 6 4IZ C3 O3 SING N N 7 4IZ C3 C2 SING N N 8 4IZ C3 C4 SING N N 9 4IZ C1 C2 SING N N 10 4IZ C1 SE1 SING N N 11 4IZ C1 O5 SING N N 12 4IZ CAQ OAU SING N N 13 4IZ CAQ CAR SING N N 14 4IZ C5 C4 SING N N 15 4IZ C5 O5 SING N N 16 4IZ C5 C6 SING N N 17 4IZ CAN SE1 SING N N 18 4IZ CAN CAM SING N N 19 4IZ C4 O4 SING N N 20 4IZ O6 C6 SING N N 21 4IZ CAR CAM SING N N 22 4IZ CAR OAT SING N N 23 4IZ CAM OAS SING N N 24 4IZ C4 H1 SING N N 25 4IZ C5 H2 SING N N 26 4IZ C6 H3 SING N N 27 4IZ C6 H4 SING N N 28 4IZ C3 H5 SING N N 29 4IZ O2 H6 SING N N 30 4IZ C2 H7 SING N N 31 4IZ O3 H8 SING N N 32 4IZ O4 H9 SING N N 33 4IZ O6 H10 SING N N 34 4IZ C1 H11 SING N N 35 4IZ CAN H12 SING N N 36 4IZ CAP H13 SING N N 37 4IZ CAV H14 SING N N 38 4IZ CAV H15 SING N N 39 4IZ OAW H16 SING N N 40 4IZ CAQ H17 SING N N 41 4IZ OAU H18 SING N N 42 4IZ CAR H19 SING N N 43 4IZ OAT H20 SING N N 44 4IZ CAM H21 SING N N 45 4IZ OAS H22 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4IZ SMILES ACDLabs 12.01 "OC1C(OC(CO)C(O)C1O)[Se]C1OC(CO)C(O)C(O)C1O" 4IZ InChI InChI 1.03 "InChI=1S/C12H22O10Se/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5+,6+,7+,8+,9-,10-,11+,12+/m1/s1" 4IZ InChIKey InChI 1.03 XCXHDIQHVBWOAM-ZFDCCPEWSA-N 4IZ SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H]([Se][C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O" 4IZ SMILES CACTVS 3.385 "OC[CH]1O[CH]([Se][CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O" 4IZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)[Se][C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)O" 4IZ SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(O1)[Se]C2C(C(C(C(O2)CO)O)O)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4IZ "SYSTEMATIC NAME" ACDLabs 12.01 "beta-D-galactopyranosyl 1-seleno-beta-D-galactopyranoside" 4IZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]selanyl-oxane-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4IZ "Create component" 2021-07-12 RCSB 4IZ "Initial release" 2022-07-13 RCSB #