data_4J2 # _chem_comp.id 4J2 _chem_comp.name "(2R)-2-amino-3-(naphthalen-2-yl)propanoic acid" _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H13 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-17 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 215.248 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4J2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2N7O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4J2 N N N 0 1 N N N Y Y N -2.152 3.603 -0.576 -2.014 1.375 0.924 N 4J2 1 4J2 CA CA C 0 1 N N R Y N N -2.977 2.529 0.037 -2.452 0.060 0.436 CA 4J2 2 4J2 CB CB C 0 1 N N N N N N -2.307 1.991 1.339 -1.679 -0.295 -0.835 CB 4J2 3 4J2 CG CG C 0 1 Y N N N N N -1.762 2.988 2.369 -0.217 -0.458 -0.506 CG 4J2 4 4J2 CD1 CD1 C 0 1 Y N N N N N -0.395 3.058 2.615 0.268 -1.711 -0.137 CD1 4J2 5 4J2 CD2 CD2 C 0 1 Y N N N N N -2.629 3.838 3.038 0.611 0.620 -0.579 CD2 4J2 6 4J2 CE1 CE1 C 0 1 Y N N N N N 0.130 3.989 3.497 1.582 -1.892 0.167 CE1 4J2 7 4J2 CZ1 CZ1 C 0 1 Y N N N N N -0.720 4.872 4.158 2.466 -0.801 0.109 CZ1 4J2 8 4J2 CZ2 CZ2 C 0 1 Y N N N N N -0.216 5.828 5.034 3.829 -0.950 0.416 CZ2 4J2 9 4J2 CZ3 CZ3 C 0 1 Y N N N N N -1.083 6.698 5.692 4.656 0.129 0.348 CZ3 4J2 10 4J2 CE2 CE2 C 0 1 Y N N N N N -2.139 4.793 3.931 1.974 0.472 -0.272 CE2 4J2 11 4J2 CE3 CE3 C 0 1 Y N N N N N -2.987 5.673 4.605 2.859 1.562 -0.336 CE3 4J2 12 4J2 CE4 CE4 C 0 1 Y N N N N N -2.457 6.619 5.480 4.171 1.383 -0.021 CE4 4J2 13 4J2 HE1 HE1 H 0 1 N N N N N N 1.195 4.030 3.671 1.943 -2.869 0.452 1HE 4J2 14 4J2 HE3 HE3 H 0 1 N N N N N N -4.054 5.621 4.448 2.498 2.538 -0.624 3HE 4J2 15 4J2 HE4 HE4 H 0 1 N N N N N N -3.118 7.297 5.999 4.848 2.223 -0.067 4HE 4J2 16 4J2 C C C 0 1 N N N Y N Y -3.249 1.363 -0.966 -3.927 0.102 0.132 C 4J2 17 4J2 O O O 0 1 N N N Y N Y -4.402 1.043 -1.261 -4.476 1.163 -0.049 O 4J2 18 4J2 H H H 0 1 N N N Y Y N -2.598 3.933 -1.408 -1.043 1.355 1.196 H 4J2 19 4J2 H2 H1 H 0 1 N Y N Y Y N -2.054 4.358 0.072 -2.182 2.091 0.234 H1 4J2 20 4J2 HA HA H 0 1 N N N Y N N -3.951 2.957 0.318 -2.260 -0.693 1.200 HA 4J2 21 4J2 HB2 HB2 H 0 1 N N N N N N -3.058 1.374 1.855 -2.065 -1.228 -1.247 2HB 4J2 22 4J2 HB1 HB1 H 0 1 N N N N N N -1.463 1.358 1.028 -1.799 0.503 -1.568 1HB 4J2 23 4J2 HD1 HD1 H 0 1 N N N N N N 0.270 2.374 2.109 -0.410 -2.551 -0.091 1HD 4J2 24 4J2 HD2 HD2 H 0 1 N N N N N N -3.693 3.761 2.867 0.222 1.585 -0.871 2HD 4J2 25 4J2 HZ2 HZ2 H 0 1 N N N N N N 0.848 5.896 5.204 4.219 -1.915 0.704 2HZ 4J2 26 4J2 HZ23 HZ23 H 0 0 N N N N N N -0.687 7.439 6.371 5.703 0.013 0.585 3HZ 4J2 27 4J2 OXT OXT O 0 1 N Y N Y N Y -2.455 0.855 -1.386 -4.631 -1.038 0.063 OXT 4J2 28 4J2 HXT HXT H 0 1 N Y N Y N Y -2.783 0.180 -1.969 -5.574 -0.961 -0.135 HXT 4J2 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4J2 N CA SING N N 1 4J2 CA CB SING N N 2 4J2 CA C SING N N 3 4J2 CB CG SING N N 4 4J2 CG CD1 DOUB Y N 5 4J2 CG CD2 SING Y N 6 4J2 CD1 CE1 SING Y N 7 4J2 CD2 CE2 DOUB Y N 8 4J2 CE1 CZ1 DOUB Y N 9 4J2 CE1 HE1 SING N N 10 4J2 CZ1 CZ2 SING Y N 11 4J2 CZ1 CE2 SING Y N 12 4J2 CZ2 CZ3 DOUB Y N 13 4J2 CZ3 CE4 SING Y N 14 4J2 CE2 CE3 SING Y N 15 4J2 CE3 CE4 DOUB Y N 16 4J2 CE3 HE3 SING N N 17 4J2 CE4 HE4 SING N N 18 4J2 C O DOUB N N 19 4J2 N H SING N N 20 4J2 N H2 SING N N 21 4J2 CA HA SING N N 22 4J2 CB HB2 SING N N 23 4J2 CB HB1 SING N N 24 4J2 CD1 HD1 SING N N 25 4J2 CD2 HD2 SING N N 26 4J2 CZ2 HZ2 SING N N 27 4J2 CZ3 HZ23 SING N N 28 4J2 C OXT SING N N 29 4J2 OXT HXT SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4J2 SMILES ACDLabs 12.01 "NC(Cc1ccc2ccccc2c1)C(=O)O" 4J2 InChI InChI 1.03 "InChI=1S/C13H13NO2/c14-12(13(15)16)8-9-5-6-10-3-1-2-4-11(10)7-9/h1-7,12H,8,14H2,(H,15,16)/t12-/m1/s1" 4J2 InChIKey InChI 1.03 JPZXHKDZASGCLU-GFCCVEGCSA-N 4J2 SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1ccc2ccccc2c1)C(O)=O" 4J2 SMILES CACTVS 3.385 "N[CH](Cc1ccc2ccccc2c1)C(O)=O" 4J2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)C[C@H](C(=O)O)N" 4J2 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4J2 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-amino-3-(naphthalen-2-yl)propanoic acid (non-preferred name)" 4J2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-azanyl-3-naphthalen-2-yl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4J2 "Create component" 2015-09-17 RCSB 4J2 "Initial release" 2015-12-16 RCSB 4J2 "Modify backbone" 2023-11-03 PDBE #