data_4KU
#
_chem_comp.id 4KU
_chem_comp.name
;2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H20 N2 O6 S4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-04-01
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 464.600
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4KU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4YZF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4KU OAE O1 O 0 1 N N N N N N 7.464 -2.489 39.042 -3.187 4.120 -0.485 OAE 4KU 1
4KU SBA S1 S 0 1 N N N N N N 8.293 -1.414 38.519 -2.057 3.167 -0.123 SBA 4KU 2
4KU OAA O2 O 0 1 N N N N N N 8.258 -1.635 37.090 -1.095 3.271 -1.164 OAA 4KU 3
4KU OAB O3 O 0 1 N N N N N N 9.646 -1.779 38.913 -1.752 3.407 1.243 OAB 4KU 4
4KU CAY C1 C 0 1 Y N N N N N 7.724 0.223 38.931 -2.707 1.532 -0.208 CAY 4KU 5
4KU CAO C2 C 0 1 Y N N N N N 7.110 1.003 37.934 -4.073 1.330 -0.186 CAO 4KU 6
4KU CAU C3 C 0 1 Y N N N N N 6.634 2.288 38.185 -4.585 0.041 -0.253 CAU 4KU 7
4KU NAS N1 N 0 1 N N N N N N 6.018 3.010 37.099 -5.966 -0.167 -0.231 NAS 4KU 8
4KU CAI C4 C 0 1 N N N N N N 5.220 4.191 37.249 -6.503 -1.528 -0.302 CAI 4KU 9
4KU SAG S2 S 0 1 N N N N N N 5.943 5.676 37.373 -6.822 -2.140 1.376 SAG 4KU 10
4KU CAK C5 C 0 1 Y N N N N N 6.768 2.824 39.463 -3.719 -1.043 -0.341 CAK 4KU 11
4KU CAM C6 C 0 1 Y N N N N N 7.372 2.070 40.466 -2.354 -0.834 -0.363 CAM 4KU 12
4KU CAW C7 C 0 1 Y N N N N N 7.842 0.776 40.213 -1.849 0.451 -0.302 CAW 4KU 13
4KU CAQ C8 C 0 1 N N N N N N 8.502 0.003 41.346 -0.359 0.675 -0.332 CAQ 4KU 14
4KU CAR C9 C 0 1 N N N N N N 8.942 1.133 42.207 0.360 -0.675 -0.341 CAR 4KU 15
4KU CAX C10 C 0 1 Y N N N N N 9.912 0.801 43.289 1.850 -0.451 -0.312 CAX 4KU 16
4KU CAN C11 C 0 1 Y N N N N N 10.454 -0.460 43.442 2.356 0.834 -0.376 CAN 4KU 17
4KU CAL C12 C 0 1 Y N N N N N 11.357 -0.658 44.486 3.721 1.042 -0.350 CAL 4KU 18
4KU CAV C13 C 0 1 Y N N N N N 11.705 0.364 45.359 4.586 -0.041 -0.257 CAV 4KU 19
4KU NAT N2 N 0 1 N N N N N N 12.645 0.083 46.413 5.967 0.167 -0.230 NAT 4KU 20
4KU CAJ C14 C 0 1 N N N N N N 12.782 0.887 47.618 6.505 1.527 -0.298 CAJ 4KU 21
4KU SAH S3 S 0 1 N N N N N N 12.989 2.548 47.592 6.815 2.140 1.381 SAH 4KU 22
4KU CAP C15 C 0 1 Y N N N N N 11.153 1.622 45.178 4.074 -1.331 -0.192 CAP 4KU 23
4KU CAZ C16 C 0 1 Y N N N N N 10.253 1.859 44.141 2.708 -1.532 -0.214 CAZ 4KU 24
4KU SBB S4 S 0 1 N N N N N N 9.550 3.472 43.909 2.057 -3.167 -0.124 SBB 4KU 25
4KU OAF O4 O 0 1 N N N N N N 8.144 3.512 44.210 1.734 -3.395 1.241 OAF 4KU 26
4KU OAD O5 O 0 1 N N N N N N 9.614 4.038 42.572 1.110 -3.280 -1.177 OAD 4KU 27
4KU OAC O6 O 0 1 N N N N N N 10.144 4.488 44.752 3.193 -4.122 -0.462 OAC 4KU 28
4KU H1 H1 H 0 1 N N N N N N 7.004 0.592 36.941 -4.743 2.175 -0.117 H1 4KU 29
4KU H2 H2 H 0 1 N N N N N N 5.429 2.347 36.637 -6.569 0.590 -0.170 H2 4KU 30
4KU H3 H3 H 0 1 N N N N N N 4.553 4.236 36.375 -7.434 -1.522 -0.869 H3 4KU 31
4KU H4 H4 H 0 1 N N N N N N 4.620 4.054 38.161 -5.781 -2.178 -0.795 H4 4KU 32
4KU H5 H5 H 0 1 N N N N N N 4.918 6.467 37.492 -7.304 -3.377 1.160 H5 4KU 33
4KU H6 H6 H 0 1 N N N N N N 6.406 3.819 39.675 -4.114 -2.047 -0.393 H6 4KU 34
4KU H7 H7 H 0 1 N N N N N N 7.480 2.490 41.455 -1.681 -1.676 -0.432 H7 4KU 35
4KU H8 H8 H 0 1 N N N N N N 7.786 -0.651 41.865 -0.094 1.234 -1.230 H8 4KU 36
4KU H9 H9 H 0 1 N N N N N N 9.354 -0.595 40.990 -0.058 1.241 0.550 H9 4KU 37
4KU H10 H10 H 0 1 N N N N N N 9.410 1.887 41.557 0.062 -1.251 0.535 H10 4KU 38
4KU H11 H11 H 0 1 N N N N N N 8.046 1.562 42.680 0.093 -1.223 -1.245 H11 4KU 39
4KU H12 H12 H 0 1 N N N N N N 10.187 -1.266 42.775 1.683 1.675 -0.448 H12 4KU 40
4KU H13 H13 H 0 1 N N N N N N 11.798 -1.635 44.619 4.116 2.046 -0.401 H13 4KU 41
4KU H14 H14 H 0 1 N N N N N N 12.431 -0.842 46.727 6.570 -0.591 -0.165 H14 4KU 42
4KU H15 H15 H 0 1 N N N N N N 11.872 0.705 48.208 7.438 1.521 -0.861 H15 4KU 43
4KU H16 H16 H 0 1 N N N N N N 13.653 0.482 48.154 5.785 2.178 -0.794 H16 4KU 44
4KU H17 H17 H 0 1 N N N N N N 13.063 2.831 48.859 7.298 3.377 1.168 H17 4KU 45
4KU H18 H18 H 0 1 N N N N N N 11.423 2.426 45.847 4.744 -2.175 -0.121 H18 4KU 46
4KU H19 H19 H 0 1 N N N N N N 7.141 -3.019 38.323 -2.935 5.054 -0.469 H19 4KU 47
4KU H20 H20 H 0 1 N N N N N N 10.407 5.229 44.218 2.941 -5.056 -0.441 H20 4KU 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4KU OAA SBA DOUB N N 1
4KU NAS CAI SING N N 2
4KU NAS CAU SING N N 3
4KU CAI SAG SING N N 4
4KU CAO CAU DOUB Y N 5
4KU CAO CAY SING Y N 6
4KU CAU CAK SING Y N 7
4KU SBA OAB DOUB N N 8
4KU SBA CAY SING N N 9
4KU SBA OAE SING N N 10
4KU CAY CAW DOUB Y N 11
4KU CAK CAM DOUB Y N 12
4KU CAW CAM SING Y N 13
4KU CAW CAQ SING N N 14
4KU CAQ CAR SING N N 15
4KU CAR CAX SING N N 16
4KU OAD SBB DOUB N N 17
4KU CAX CAN DOUB Y N 18
4KU CAX CAZ SING Y N 19
4KU CAN CAL SING Y N 20
4KU SBB CAZ SING N N 21
4KU SBB OAF DOUB N N 22
4KU SBB OAC SING N N 23
4KU CAZ CAP DOUB Y N 24
4KU CAL CAV DOUB Y N 25
4KU CAP CAV SING Y N 26
4KU CAV NAT SING N N 27
4KU NAT CAJ SING N N 28
4KU SAH CAJ SING N N 29
4KU CAO H1 SING N N 30
4KU NAS H2 SING N N 31
4KU CAI H3 SING N N 32
4KU CAI H4 SING N N 33
4KU SAG H5 SING N N 34
4KU CAK H6 SING N N 35
4KU CAM H7 SING N N 36
4KU CAQ H8 SING N N 37
4KU CAQ H9 SING N N 38
4KU CAR H10 SING N N 39
4KU CAR H11 SING N N 40
4KU CAN H12 SING N N 41
4KU CAL H13 SING N N 42
4KU NAT H14 SING N N 43
4KU CAJ H15 SING N N 44
4KU CAJ H16 SING N N 45
4KU SAH H17 SING N N 46
4KU CAP H18 SING N N 47
4KU OAE H19 SING N N 48
4KU OAC H20 SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4KU SMILES ACDLabs 12.01 "OS(=O)(c1c(ccc(c1)NCS)CCc2ccc(NCS)cc2S(=O)(O)=O)=O"
4KU InChI InChI 1.03 "InChI=1S/C16H20N2O6S4/c19-27(20,21)15-7-13(17-9-25)5-3-11(15)1-2-12-4-6-14(18-10-26)8-16(12)28(22,23)24/h3-8,17-18,25-26H,1-2,9-10H2,(H,19,20,21)(H,22,23,24)"
4KU InChIKey InChI 1.03 LJEHNCSYWIAXRX-UHFFFAOYSA-N
4KU SMILES_CANONICAL CACTVS 3.385 "O[S](=O)(=O)c1cc(NCS)ccc1CCc2ccc(NCS)cc2[S](O)(=O)=O"
4KU SMILES CACTVS 3.385 "O[S](=O)(=O)c1cc(NCS)ccc1CCc2ccc(NCS)cc2[S](O)(=O)=O"
4KU SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(c(cc1NCS)S(=O)(=O)O)CCc2ccc(cc2S(=O)(=O)O)NCS"
4KU SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(c(cc1NCS)S(=O)(=O)O)CCc2ccc(cc2S(=O)(=O)O)NCS"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4KU "SYSTEMATIC NAME" ACDLabs 12.01
;2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}
;
4KU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-(sulfanylmethylamino)-2-[2-[4-(sulfanylmethylamino)-2-sulfo-phenyl]ethyl]benzenesulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4KU "Create component" 2015-04-01 EBI
4KU "Initial release" 2015-11-04 RCSB
4KU "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 4KU LYS None Crosslinker "Amino-acid side chain" "Any position" CAI NZ ? ?
2 4KU LYS None Crosslinker "Amino-acid side chain" "Any position" CAJ NZ ? ?
#