data_4N9 # _chem_comp.id 4N9 _chem_comp.name "1-[(4-cyanobenzyl)carbamothioyl]-L-proline" _chem_comp.type "L-peptide COOH carboxy terminus" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C14 H15 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-04-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 289.353 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4N9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Z1T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4N9 C C C 0 1 N N N N N N -22.621 5.230 18.143 4.151 -0.369 0.671 C 4N9 1 4N9 N1 N1 N 0 1 N N N N N N -31.492 12.225 17.995 -7.379 1.023 0.524 N1 4N9 2 4N9 N N N 0 1 N N N N N N -24.370 6.954 18.577 2.141 0.670 -0.233 N 4N9 3 4N9 C3 C2 C 0 1 N N N N N N -27.650 7.046 20.030 -0.991 -1.247 -0.415 C3 4N9 4 4N9 C4 C3 C 0 1 Y N N N N N -28.414 8.222 19.572 -2.398 -0.748 -0.208 C4 4N9 5 4N9 C5 C4 C 0 1 Y N N N N N -27.897 9.143 18.623 -2.955 -0.762 1.058 C5 4N9 6 4N9 C6 C5 C 0 1 Y N N N N N -28.763 10.162 18.247 -4.242 -0.306 1.255 C6 4N9 7 4N9 C7 C6 C 0 1 Y N N N N N -30.055 10.327 18.787 -4.983 0.171 0.172 C7 4N9 8 4N9 C8 C7 C 0 1 Y N N N N N -30.505 9.452 19.717 -4.414 0.183 -1.104 C8 4N9 9 4N9 C10 C8 C 0 1 N N N N N N -30.799 11.322 18.371 -6.319 0.646 0.368 C10 4N9 10 4N9 C9 C9 C 0 1 Y N N N N N -29.659 8.417 20.137 -3.125 -0.271 -1.285 C9 4N9 11 4N9 N2 N3 N 0 1 N N N N N N -26.246 7.060 19.752 -0.049 -0.138 -0.247 N2 4N9 12 4N9 C1 C10 C 0 1 N N N N N N -25.592 6.590 18.640 1.274 -0.350 -0.387 C1 4N9 13 4N9 S1 S1 S 0 1 N N N N N N -26.328 5.686 17.405 1.855 -1.917 -0.761 S1 4N9 14 4N9 CA C11 C 0 1 N N S N N N -23.332 6.394 17.630 3.602 0.581 -0.363 CA 4N9 15 4N9 CB C12 C 0 1 N N N N N N -22.197 7.339 17.549 4.171 1.996 -0.130 CB 4N9 16 4N9 CG C13 C 0 1 N N N N N N -22.661 8.615 18.229 2.959 2.913 -0.441 CG 4N9 17 4N9 CD C14 C 0 1 N N N N N N -23.715 8.117 19.148 1.779 2.063 0.088 CD 4N9 18 4N9 O O1 O 0 1 N N N N N N -22.498 4.959 19.366 3.488 -0.658 1.638 O 4N9 19 4N9 H2 H2 H 0 1 N N N N N N -27.776 6.967 21.120 -0.771 -2.025 0.316 H2 4N9 20 4N9 H3 H3 H 0 1 N N N N N N -28.080 6.157 19.546 -0.895 -1.656 -1.421 H3 4N9 21 4N9 H4 H4 H 0 1 N N N N N N -26.898 9.057 18.221 -2.381 -1.132 1.895 H4 4N9 22 4N9 H5 H5 H 0 1 N N N N N N -28.428 10.867 17.500 -4.675 -0.319 2.244 H5 4N9 23 4N9 H6 H6 H 0 1 N N N N N N -31.499 9.550 20.128 -4.982 0.551 -1.946 H6 4N9 24 4N9 H7 H7 H 0 1 N N N N N N -29.989 7.754 20.923 -2.682 -0.258 -2.270 H7 4N9 25 4N9 H8 H8 H 0 1 N N N N N N -25.666 7.465 20.459 -0.378 0.750 -0.036 H8 4N9 26 4N9 HA HA H 0 1 N N N N N N -23.767 6.202 16.638 3.865 0.233 -1.362 HA 4N9 27 4N9 HB2 HB2 H 0 1 N N N N N N -21.319 6.927 18.069 4.491 2.118 0.905 HB2 4N9 28 4N9 HB1 HB1 H 0 1 N N N N N N -21.941 7.538 16.498 4.994 2.199 -0.815 HB1 4N9 29 4N9 HG2 HG2 H 0 1 N N N N N N -21.840 9.092 18.785 3.035 3.857 0.098 HG2 4N9 30 4N9 HG1 HG1 H 0 1 N N N N N N -23.073 9.328 17.500 2.863 3.084 -1.513 HG1 4N9 31 4N9 HD2 HD2 H 0 1 N N N N N N -23.258 7.841 20.110 0.854 2.341 -0.417 HD2 4N9 32 4N9 HD1 HD1 H 0 1 N N N N N N -24.460 8.910 19.310 1.677 2.190 1.166 HD1 4N9 33 4N9 OXT OXT O 0 1 N Y N N N N -22.417 4.194 17.327 5.375 -0.897 0.514 OXT 4N9 34 4N9 HXT H1 H 0 1 N Y N N N N -22.211 3.422 17.840 5.683 -1.504 1.201 HXT 4N9 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4N9 S1 C1 DOUB N N 1 4N9 CB CA SING N N 2 4N9 CB CG SING N N 3 4N9 CA C SING N N 4 4N9 CA N SING N N 5 4N9 N1 C10 TRIP N N 6 4N9 C O DOUB N N 7 4N9 CG CD SING N N 8 4N9 C6 C5 DOUB Y N 9 4N9 C6 C7 SING Y N 10 4N9 C10 C7 SING N N 11 4N9 N C1 SING N N 12 4N9 N CD SING N N 13 4N9 C5 C4 SING Y N 14 4N9 C1 N2 SING N N 15 4N9 C7 C8 DOUB Y N 16 4N9 C4 C3 SING N N 17 4N9 C4 C9 DOUB Y N 18 4N9 C8 C9 SING Y N 19 4N9 N2 C3 SING N N 20 4N9 C3 H2 SING N N 21 4N9 C3 H3 SING N N 22 4N9 C5 H4 SING N N 23 4N9 C6 H5 SING N N 24 4N9 C8 H6 SING N N 25 4N9 C9 H7 SING N N 26 4N9 N2 H8 SING N N 27 4N9 CA HA SING N N 28 4N9 CB HB2 SING N N 29 4N9 CB HB1 SING N N 30 4N9 CG HG2 SING N N 31 4N9 CG HG1 SING N N 32 4N9 CD HD2 SING N N 33 4N9 CD HD1 SING N N 34 4N9 C OXT SING N N 35 4N9 OXT HXT SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4N9 SMILES ACDLabs 12.01 "C(=O)(O)C2N(C(NCc1ccc(cc1)C#N)=S)CCC2" 4N9 InChI InChI 1.03 "InChI=1S/C14H15N3O2S/c15-8-10-3-5-11(6-4-10)9-16-14(20)17-7-1-2-12(17)13(18)19/h3-6,12H,1-2,7,9H2,(H,16,20)(H,18,19)/t12-/m0/s1" 4N9 InChIKey InChI 1.03 JNEKVVJVCJLOEF-LBPRGKRZSA-N 4N9 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@H]1CCCN1C(=S)NCc2ccc(cc2)C#N" 4N9 SMILES CACTVS 3.385 "OC(=O)[CH]1CCCN1C(=S)NCc2ccc(cc2)C#N" 4N9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1CNC(=S)N2CCC[C@H]2C(=O)O)C#N" 4N9 SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1CNC(=S)N2CCCC2C(=O)O)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4N9 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(4-cyanobenzyl)carbamothioyl]-L-proline" 4N9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-1-[(4-cyanophenyl)methylcarbamothioyl]pyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4N9 "Create component" 2015-04-20 RCSB 4N9 "Initial release" 2016-09-28 RCSB 4N9 "Modify PCM" 2024-09-27 PDBE #