data_4NF # _chem_comp.id 4NF _chem_comp.name "N-(4-nitrophenyl)thioformamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H6 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-NITROPHENYL ISOTHIOCYANATE, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 182.200 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4NF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4EF9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4NF N2 N2 N 0 1 N N N N N N -58.930 -43.297 15.825 2.417 1.137 0.464 N2 4NF 1 4NF S2 S2 S 0 1 N N N N N N -58.945 -40.625 16.157 2.992 -1.125 -0.576 S2 4NF 2 4NF C4 C4 C 0 1 N N N N N N -59.401 -42.023 15.377 3.382 0.264 0.114 C4 4NF 3 4NF O4 O4 O 0 1 N N N N N N -52.713 -44.215 15.194 -3.389 -1.406 0.249 O4 4NF 4 4NF C5 C5 C 0 1 Y N N N N N -57.540 -43.631 15.891 1.071 0.783 0.329 C5 4NF 5 4NF C6 C6 C 0 1 Y N N N N N -57.132 -44.804 15.264 0.645 -0.485 0.703 C6 4NF 6 4NF C7 C7 C 0 1 Y N N N N N -55.796 -45.181 15.284 -0.686 -0.832 0.569 C7 4NF 7 4NF C8 C8 C 0 1 Y N N N N N -54.883 -44.376 15.948 -1.592 0.082 0.064 C8 4NF 8 4NF C9 C9 C 0 1 Y N N N N N -55.269 -43.207 16.584 -1.171 1.345 -0.310 C9 4NF 9 4NF C10 C10 C 0 1 Y N N N N N -56.606 -42.837 16.558 0.157 1.700 -0.173 C10 4NF 10 4NF N3 N3 N 1 1 N N N N N N -53.510 -44.782 15.932 -3.017 -0.294 -0.079 N3 4NF 11 4NF O3 O3 O -1 1 N N N N N N -53.132 -45.806 16.628 -3.816 0.510 -0.524 O3 4NF 12 4NF H1 H1 H 0 1 N N N N N N -59.601 -43.984 16.104 2.656 2.010 0.813 H1 4NF 13 4NF H3 H3 H 0 1 N N N N N N -60.060 -41.967 14.523 4.419 0.502 0.300 H3 4NF 14 4NF H5 H5 H 0 1 N N N N N N -57.858 -45.424 14.759 1.352 -1.199 1.098 H5 4NF 15 4NF H6 H6 H 0 1 N N N N N N -55.473 -46.086 14.791 -1.018 -1.818 0.859 H6 4NF 16 4NF H7 H7 H 0 1 N N N N N N -54.540 -42.593 17.092 -1.881 2.056 -0.705 H7 4NF 17 4NF H8 H8 H 0 1 N N N N N N -56.925 -41.933 17.055 0.485 2.688 -0.461 H8 4NF 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4NF O4 N3 DOUB N N 1 4NF C6 C7 DOUB Y N 2 4NF C6 C5 SING Y N 3 4NF C7 C8 SING Y N 4 4NF C4 N2 SING N N 5 4NF C4 S2 DOUB N N 6 4NF N2 C5 SING N N 7 4NF C5 C10 DOUB Y N 8 4NF N3 C8 SING N N 9 4NF N3 O3 SING N N 10 4NF C8 C9 DOUB Y N 11 4NF C10 C9 SING Y N 12 4NF N2 H1 SING N N 13 4NF C4 H3 SING N N 14 4NF C6 H5 SING N N 15 4NF C7 H6 SING N N 16 4NF C9 H7 SING N N 17 4NF C10 H8 SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4NF SMILES ACDLabs 12.01 "S=CNc1ccc(cc1)[N+]([O-])=O" 4NF InChI InChI 1.03 "InChI=1S/C7H6N2O2S/c10-9(11)7-3-1-6(2-4-7)8-5-12/h1-5H,(H,8,12)" 4NF InChIKey InChI 1.03 JMLSAESLDQZYBA-UHFFFAOYSA-N 4NF SMILES_CANONICAL CACTVS 3.370 "[O-][N+](=O)c1ccc(NC=S)cc1" 4NF SMILES CACTVS 3.370 "[O-][N+](=O)c1ccc(NC=S)cc1" 4NF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1NC=S)[N+](=O)[O-]" 4NF SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1NC=S)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4NF "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-nitrophenyl)thioformamide" 4NF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-(4-nitrophenyl)methanethioamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4NF "Create component" 2012-04-08 RCSB 4NF "Initial release" 2012-12-07 RCSB 4NF "Modify synonyms" 2020-06-05 PDBE 4NF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 4NF _pdbx_chem_comp_synonyms.name "4-NITROPHENYL ISOTHIOCYANATE, bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 4NF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #