data_4OC # _chem_comp.id 4OC _chem_comp.name "4N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H18 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-08-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 351.250 _chem_comp.one_letter_code C _chem_comp.three_letter_code 4OC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2I1C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4OC P P P 0 1 N N N -97.866 -14.583 -112.666 2.787 0.324 -4.407 P 4OC 1 4OC OP1 O1P O 0 1 N N N -98.793 -15.330 -111.811 3.659 1.172 -5.286 OP1 4OC 2 4OC OP2 O2P O 0 1 N N N -98.008 -14.611 -114.273 2.921 -1.270 -4.647 OP2 4OC 3 4OC "O5'" O5* O 0 1 N N N -97.093 -13.281 -112.050 3.063 0.476 -2.819 "O5'" 4OC 4 4OC CM2 CM2 C 0 1 N N N -94.216 -10.655 -107.412 -0.332 -1.396 2.174 CM2 4OC 5 4OC "C5'" C5* C 0 1 N N N -97.235 -13.387 -110.632 2.282 -0.292 -1.921 "C5'" 4OC 6 4OC "C4'" C4* C 0 1 N N R -96.313 -12.426 -109.932 2.725 0.023 -0.498 "C4'" 4OC 7 4OC "O4'" O4* O 0 1 N N N -95.924 -11.205 -110.500 2.470 1.422 -0.246 "O4'" 4OC 8 4OC "C3'" C3* C 0 1 N N R -96.694 -12.282 -108.452 1.940 -0.742 0.560 "C3'" 4OC 9 4OC "C2'" C2* C 0 1 N N R -96.406 -10.808 -108.139 0.748 0.163 0.786 "C2'" 4OC 10 4OC "O2'" O2* O 0 1 N N N -95.587 -10.602 -106.987 0.137 -0.058 2.041 "O2'" 4OC 11 4OC "C1'" C1* C 0 1 N N R -95.861 -10.194 -109.476 1.373 1.543 0.675 "C1'" 4OC 12 4OC N1 N1 N 0 1 N N N -96.669 -9.152 -109.884 0.452 2.524 0.177 N1 4OC 13 4OC C2 C2 C 0 1 N N N -96.904 -7.980 -109.188 -0.310 3.348 1.043 C2 4OC 14 4OC O2 O2 O 0 1 N N N -96.354 -7.812 -108.096 -0.206 3.248 2.267 O2 4OC 15 4OC N3 N3 N 0 1 N N N -97.743 -7.049 -109.672 -1.180 4.273 0.492 N3 4OC 16 4OC C4 C4 C 0 1 N N N -98.350 -7.225 -110.872 -1.305 4.394 -0.803 C4 4OC 17 4OC N4 N4 N 0 1 N N N -99.271 -6.189 -111.394 -2.175 5.320 -1.331 N4 4OC 18 4OC C5 C5 C 0 1 N N N -98.121 -8.431 -111.627 -0.524 3.549 -1.744 C5 4OC 19 4OC C6 C6 C 0 1 N N N -97.274 -9.364 -111.117 0.307 2.665 -1.195 C6 4OC 20 4OC CM4 CM4 C 0 1 N N N -99.531 -4.958 -110.611 -2.949 6.158 -0.465 CM4 4OC 21 4OC "O3'" O3* O 0 1 N N N -96.238 -13.207 -107.492 2.742 -0.809 1.739 "O3'" 4OC 22 4OC OP3 O3P O 0 1 N Y N ? ? ? 1.198 0.588 -4.548 OP3 4OC 23 4OC HM41 1HM4 H 0 0 N N N -99.595 -5.209 -109.542 -4.000 5.861 -0.496 HM41 4OC 24 4OC HM42 2HM4 H 0 0 N N N -98.711 -4.242 -110.770 -2.869 7.202 -0.779 HM42 4OC 25 4OC HM43 3HM4 H 0 0 N N N -100.480 -4.508 -110.939 -2.589 6.073 0.564 HM43 4OC 26 4OC HN4 HN4 H 0 1 N N N -98.881 -5.886 -112.264 -2.224 5.363 -2.315 HN4 4OC 27 4OC H5 H5 H 0 1 N N N -98.611 -8.590 -112.576 -0.641 3.665 -2.813 H5 4OC 28 4OC H6 H6 H 0 1 N N N -97.071 -10.269 -111.670 0.915 2.009 -1.809 H6 4OC 29 4OC "H1'" H1* H 0 1 N N N -94.833 -9.838 -109.313 1.754 1.910 1.633 "H1'" 4OC 30 4OC "H4'" H4* H 0 1 N N N -95.362 -12.958 -110.085 3.804 -0.139 -0.410 "H4'" 4OC 31 4OC "H5'" 1H5* H 0 1 N N N -98.274 -13.153 -110.356 1.229 -0.035 -2.051 "H5'" 4OC 32 4OC "H5''" 2H5* H 0 0 N N N -96.978 -14.412 -110.326 2.428 -1.352 -2.133 "H5''" 4OC 33 4OC HOP3 3HOP H 0 0 N N N ? ? ? 0.799 0.616 -5.443 HOP3 4OC 34 4OC "H3'" H3* H 0 1 N N N -97.749 -12.574 -108.343 1.675 -1.764 0.277 "H3'" 4OC 35 4OC "HO3'" H3T H 0 0 N Y N -96.135 -14.060 -107.897 3.447 -0.153 1.628 "HO3'" 4OC 36 4OC "H2'" H2* H 0 1 N N N -97.319 -10.279 -107.828 -0.000 0.004 -0.000 "H2'" 4OC 37 4OC HM21 1HM2 H 0 0 N N N -94.173 -10.669 -108.511 0.469 -2.091 1.909 HM21 4OC 38 4OC HM22 2HM2 H 0 0 N N N -93.681 -9.771 -107.035 -1.193 -1.548 1.518 HM22 4OC 39 4OC HM23 3HM2 H 0 0 N N N -93.744 -11.566 -107.015 -0.631 -1.566 3.210 HM23 4OC 40 4OC HOP2 2HOP H 0 0 N N N -98.928 -14.617 -114.510 2.886 -1.617 -5.563 HOP2 4OC 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4OC P "O5'" SING N N 1 4OC P OP1 DOUB N N 2 4OC P OP3 SING N N 3 4OC P OP2 SING N N 4 4OC OP2 HOP2 SING N N 5 4OC "O5'" "C5'" SING N N 6 4OC CM2 "O2'" SING N N 7 4OC CM2 HM21 SING N N 8 4OC CM2 HM22 SING N N 9 4OC CM2 HM23 SING N N 10 4OC "C5'" "C4'" SING N N 11 4OC "C5'" "H5'" SING N N 12 4OC "C5'" "H5''" SING N N 13 4OC "C4'" "O4'" SING N N 14 4OC "C4'" "C3'" SING N N 15 4OC "C4'" "H4'" SING N N 16 4OC "O4'" "C1'" SING N N 17 4OC "C3'" "O3'" SING N N 18 4OC "C3'" "C2'" SING N N 19 4OC "C3'" "H3'" SING N N 20 4OC "C2'" "C1'" SING N N 21 4OC "C2'" "O2'" SING N N 22 4OC "C2'" "H2'" SING N N 23 4OC "C1'" N1 SING N N 24 4OC "C1'" "H1'" SING N N 25 4OC N1 C6 SING N N 26 4OC N1 C2 SING N N 27 4OC C2 O2 DOUB N N 28 4OC C2 N3 SING N N 29 4OC N3 C4 DOUB N N 30 4OC C4 N4 SING N N 31 4OC C4 C5 SING N N 32 4OC N4 CM4 SING N N 33 4OC N4 HN4 SING N N 34 4OC C5 C6 DOUB N N 35 4OC C5 H5 SING N N 36 4OC C6 H6 SING N N 37 4OC CM4 HM41 SING N N 38 4OC CM4 HM42 SING N N 39 4OC CM4 HM43 SING N N 40 4OC "O3'" "HO3'" SING N N 41 4OC OP3 HOP3 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4OC SMILES ACDLabs 10.04 "O=C1N=C(NC)C=CN1C2OC(C(O)C2OC)COP(=O)(O)O" 4OC SMILES_CANONICAL CACTVS 3.341 "CNC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OC" 4OC SMILES CACTVS 3.341 "CNC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OC" 4OC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CNC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OC" 4OC SMILES "OpenEye OEToolkits" 1.5.0 "CNC1=NC(=O)N(C=C1)C2C(C(C(O2)COP(=O)(O)O)O)OC" 4OC InChI InChI 1.03 "InChI=1S/C11H18N3O8P/c1-12-7-3-4-14(11(16)13-7)10-9(20-2)8(15)6(22-10)5-21-23(17,18)19/h3-4,6,8-10,15H,5H2,1-2H3,(H,12,13,16)(H2,17,18,19)/t6-,8-,9-,10-/m1/s1" 4OC InChIKey InChI 1.03 GPJNLASIBKTFTM-PEBGCTIMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4OC "SYSTEMATIC NAME" ACDLabs 10.04 ;N-methyl-2'-O-methylcytidine 5'-(dihydrogen phosphate) ; 4OC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-3-hydroxy-4-methoxy-5-(4-methylamino-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4OC "Create component" 2006-08-24 EBI 4OC "Modify descriptor" 2011-06-04 RCSB #