data_4PK # _chem_comp.id 4PK _chem_comp.name "N-[(benzyloxy)carbonyl]-O-carbamimidamido-L-homoseryl-N-{(3S,4S)-3-hydroxy-6-methyl-1-oxo-1-[(2-phenylethyl)amino]heptan-4-yl}-L-valinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H51 N7 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-05-01 _chem_comp.pdbx_modified_date 2015-07-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 669.811 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4PK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ZL4 _chem_comp.pdbx_subcomponent_list "PHQ GGB VAL STA PEA" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4PK C10 C1 C 0 1 Y N N 0.502 107.397 39.223 -9.620 2.716 -0.985 C10 PHQ 1 4PK C02 C7 C 0 1 N N N -1.594 104.168 40.969 -5.638 1.361 0.523 C02 PHQ 2 4PK O03 O1 O 0 1 N N N -0.918 105.333 41.034 -6.569 2.147 -0.052 O03 PHQ 3 4PK C04 C8 C 0 1 N N N -1.556 106.350 40.250 -7.795 2.369 0.694 C04 PHQ 4 4PK C05 C9 C 0 1 Y N N -0.700 106.694 39.048 -8.710 3.265 -0.100 C05 PHQ 5 4PK C06 C10 C 0 1 Y N N -1.108 106.307 37.757 -8.640 4.637 0.056 C06 PHQ 6 4PK C07 C11 C 0 1 Y N N -0.316 106.628 36.644 -9.479 5.459 -0.672 C07 PHQ 7 4PK C08 C12 C 0 1 Y N N 0.885 107.333 36.824 -10.389 4.910 -1.556 C08 PHQ 8 4PK C09 C13 C 0 1 Y N N 1.296 107.718 38.111 -10.455 3.539 -1.717 C09 PHQ 9 4PK O11 O2 O 0 1 N N N -2.824 104.147 40.998 -5.845 0.874 1.617 O11 PHQ 10 4PK N01 N1 N 0 1 N N N -0.896 102.990 40.863 -4.477 1.115 -0.116 N GGB 11 4PK C12 C14 C 0 1 N N S -1.635 101.724 40.813 -3.465 0.260 0.509 CA GGB 12 4PK C13 C2 C 0 1 N N N -0.857 100.674 40.013 -3.775 -1.206 0.201 CB GGB 13 4PK C14 C15 C 0 1 N N N -0.390 101.204 38.659 -5.098 -1.597 0.863 CG GGB 14 4PK C20 C4 C 0 1 N N N -1.747 101.084 42.223 -2.105 0.611 -0.037 C GGB 15 4PK O15 O3 O 0 1 N N N -1.547 101.532 37.905 -5.388 -2.966 0.575 OD GGB 16 4PK N16 N2 N 0 1 N N N -2.475 100.488 37.870 -6.599 -3.430 1.144 NE GGB 17 4PK C17 C3 C 0 1 N N N -2.666 99.871 36.686 -6.998 -4.731 0.946 CZ GGB 18 4PK N18 N3 N 0 1 N N N -1.966 100.250 35.604 -6.261 -5.537 0.234 NH1 GGB 19 4PK N19 N4 N 0 1 N N N -3.559 98.876 36.576 -8.173 -5.181 1.498 NH2 GGB 20 4PK O21 O4 O 0 1 N N N -0.972 101.329 43.148 -1.992 1.489 -0.867 OA1 GGB 21 4PK N22 N5 N 0 1 N N N -2.764 100.187 42.437 -1.013 -0.050 0.396 N VAL 22 4PK C23 C16 C 0 1 N N S -2.928 99.485 43.704 0.309 0.291 -0.135 CA VAL 23 4PK C27 C18 C 0 1 N N N -3.431 98.088 43.235 1.224 -0.900 -0.007 C VAL 24 4PK O28 O5 O 0 1 N N N -4.625 97.880 42.990 0.949 -1.797 0.762 O VAL 25 4PK C24 C5 C 0 1 N N N -3.945 100.149 44.634 0.888 1.466 0.655 CB VAL 26 4PK C26 C6 C 0 1 N N N -3.750 99.434 45.992 0.032 2.712 0.417 CG1 VAL 27 4PK C25 C17 C 0 1 N N N -3.652 101.662 44.774 0.890 1.126 2.147 CG2 VAL 28 4PK N29 N6 N 0 1 N N N -2.512 97.082 43.055 2.348 -0.968 -0.748 N STA 29 4PK C30 C19 C 0 1 N N S -2.940 95.766 42.564 3.181 -2.173 -0.706 CA STA 30 4PK C31 C20 C 0 1 N N N -2.222 95.495 41.221 2.638 -3.202 -1.700 CB STA 31 4PK C32 C21 C 0 1 N N N -2.461 96.604 40.177 1.247 -3.657 -1.255 CG STA 32 4PK C33 C22 C 0 1 N N N -1.546 96.372 38.960 0.653 -4.590 -2.312 CD1 STA 33 4PK C34 C23 C 0 1 N N N -3.929 96.623 39.706 1.354 -4.399 0.078 CD2 STA 34 4PK C35 C24 C 0 1 N N S -2.529 94.674 43.563 4.620 -1.812 -1.079 CH STA 35 4PK O36 O6 O 0 1 N N N -1.160 94.882 43.910 4.645 -1.261 -2.398 OH STA 36 4PK C37 C25 C 0 1 N N N -3.425 94.712 44.814 5.161 -0.783 -0.086 CM STA 37 4PK C38 C26 C 0 1 N N N -4.793 94.041 44.508 6.616 -0.518 -0.379 C STA 38 4PK O39 O7 O 0 1 N N N -5.797 94.728 44.307 7.165 -1.097 -1.293 O STA 39 4PK C43 C29 C 0 1 Y N N -6.232 91.542 46.601 10.717 1.910 0.790 "C1'" PEA 40 4PK C44 C30 C 0 1 Y N N -7.376 92.186 47.082 11.073 2.915 -0.090 "C6'" PEA 41 4PK C45 C31 C 0 1 Y N N -7.323 92.851 48.315 12.407 3.161 -0.355 "C5'" PEA 42 4PK C46 C32 C 0 1 Y N N -6.128 92.873 49.052 13.385 2.403 0.261 "C4'" PEA 43 4PK C47 C33 C 0 1 Y N N -4.982 92.234 48.562 13.029 1.398 1.141 "C3'" PEA 44 4PK C48 C34 C 0 1 Y N N -5.037 91.568 47.332 11.695 1.151 1.405 "C2'" PEA 45 4PK C42 C28 C 0 1 N N N -6.287 90.841 45.246 9.262 1.646 1.083 C2 PEA 46 4PK C41 C27 C 0 1 N N N -6.143 91.971 44.211 8.720 0.617 0.089 C1 PEA 47 4PK N40 N7 N 0 1 N N N -4.874 92.661 44.475 7.307 0.360 0.375 N PEA 48 4PK H1 H1 H 0 1 N N N 0.816 107.691 40.214 -9.674 1.644 -1.107 H1 PHQ 49 4PK H9 H9 H 0 1 N N N -1.696 107.250 40.866 -8.289 1.413 0.873 H9 PHQ 50 4PK H10 H10 H 0 1 N N N -2.535 105.984 39.907 -7.561 2.842 1.647 H10 PHQ 51 4PK H11 H11 H 0 1 N N N -2.031 105.763 37.623 -7.929 5.066 0.747 H11 PHQ 52 4PK H12 H12 H 0 1 N N N -0.629 106.334 35.653 -9.428 6.531 -0.546 H12 PHQ 53 4PK H13 H13 H 0 1 N N N 1.496 107.581 35.969 -11.045 5.553 -2.125 H13 PHQ 54 4PK H14 H14 H 0 1 N N N 2.221 108.260 38.244 -11.165 3.110 -2.408 H14 PHQ 55 4PK H8 H8 H 0 1 N N N 0.103 102.995 40.820 -4.312 1.504 -0.989 HN2 GGB 56 4PK H15 H15 H 0 1 N N N -2.638 101.865 40.383 -3.474 0.415 1.588 HCA GGB 57 4PK H2 H2 H 0 1 N N N -1.508 99.803 39.846 -3.853 -1.342 -0.877 HCB1 GGB 58 4PK H3 H3 H 0 1 N N N 0.024 100.367 40.596 -2.975 -1.836 0.590 HCB2 GGB 59 4PK H16 H16 H 0 1 N N N 0.193 100.432 38.135 -5.020 -1.460 1.941 HCG1 GGB 60 4PK H17 H17 H 0 1 N N N 0.232 102.100 38.801 -5.898 -0.967 0.474 HCG2 GGB 61 4PK H18 H18 H 0 1 N N N -2.977 100.210 38.689 -7.147 -2.830 1.674 HNE GGB 62 4PK H19 H19 H 0 1 N N N -1.337 101.000 35.809 -5.432 -5.219 -0.156 HN1 GGB 63 4PK H20 H20 H 0 1 N N N -4.088 98.588 37.375 -8.721 -4.582 2.028 HN21 GGB 64 4PK H21 H21 H 0 1 N N N -3.696 98.422 35.695 -8.455 -6.099 1.358 HN22 GGB 65 4PK H22 H22 H 0 1 N N N -3.414 100.009 41.699 -1.103 -0.752 1.060 H VAL 66 4PK H23 H23 H 0 1 N N N -1.963 99.375 44.221 0.218 0.568 -1.185 HA VAL 67 4PK H4 H4 H 0 1 N N N -4.968 99.991 44.263 1.909 1.658 0.325 HB VAL 68 4PK H5 H5 H 0 1 N N N -4.449 99.852 46.731 -0.957 2.560 0.848 HG11 VAL 69 4PK H6 H6 H 0 1 N N N -3.945 98.358 45.871 0.506 3.573 0.888 HG12 VAL 70 4PK H7 H7 H 0 1 N N N -2.717 99.583 46.340 -0.061 2.889 -0.654 HG13 VAL 71 4PK H24 H24 H 0 1 N N N -4.394 102.119 45.446 1.500 0.239 2.317 HG21 VAL 72 4PK H25 H25 H 0 1 N N N -2.644 101.803 45.191 1.303 1.963 2.710 HG22 VAL 73 4PK H26 H26 H 0 1 N N N -3.710 102.140 43.785 -0.131 0.934 2.477 HG23 VAL 74 4PK H27 H27 H 0 1 N N N -1.547 97.247 43.259 2.606 -0.220 -1.308 HN2 STA 75 4PK H28 H28 H 0 1 N N N -4.029 95.742 42.413 3.161 -2.593 0.300 HA STA 76 4PK H29 H29 H 0 1 N N N -2.591 94.543 40.812 2.575 -2.752 -2.690 HB1 STA 77 4PK H30 H30 H 0 1 N N N -1.141 95.419 41.410 3.308 -4.062 -1.734 HB2 STA 78 4PK H31 H31 H 0 1 N N N -2.217 97.578 40.627 0.601 -2.786 -1.136 HG STA 79 4PK H32 H32 H 0 1 N N N -0.496 96.357 39.288 1.298 -5.460 -2.432 HD11 STA 80 4PK H33 H33 H 0 1 N N N -1.797 95.409 38.491 -0.338 -4.913 -1.996 HD12 STA 81 4PK H34 H34 H 0 1 N N N -1.691 97.184 38.232 0.577 -4.061 -3.262 HD13 STA 82 4PK H35 H35 H 0 1 N N N -4.590 96.788 40.570 1.777 -3.734 0.831 HD21 STA 83 4PK H36 H36 H 0 1 N N N -4.069 97.434 38.977 0.362 -4.722 0.395 HD22 STA 84 4PK H37 H37 H 0 1 N N N -4.175 95.660 39.235 1.999 -5.269 -0.041 HD23 STA 85 4PK H38 H38 H 0 1 N N N -2.649 93.694 43.078 5.239 -2.708 -1.048 HC STA 86 4PK H39 H39 H 0 1 N N N -0.885 94.216 44.529 4.114 -0.459 -2.499 HH STA 87 4PK H40 H40 H 0 1 N N N -2.929 94.171 45.634 4.597 0.145 -0.180 HM1 STA 88 4PK H41 H41 H 0 1 N N N -3.591 95.758 45.112 5.060 -1.168 0.929 HM2 STA 89 4PK H47 H47 H 0 1 N N N -8.292 92.171 46.509 10.309 3.507 -0.571 "H6'" PEA 90 4PK H48 H48 H 0 1 N N N -8.202 93.347 48.698 12.686 3.945 -1.043 "H5'" PEA 91 4PK H49 H49 H 0 1 N N N -6.092 93.386 50.002 14.428 2.595 0.054 "H4'" PEA 92 4PK H50 H50 H 0 1 N N N -4.063 92.255 49.129 13.793 0.805 1.622 "H3'" PEA 93 4PK H51 H51 H 0 1 N N N -4.158 91.074 46.946 11.417 0.366 2.093 "H2'" PEA 94 4PK H45 H45 H 0 1 N N N -7.247 90.319 45.119 9.161 1.260 2.098 H21 PEA 95 4PK H46 H46 H 0 1 N N N -5.462 90.120 45.149 8.698 2.574 0.989 H22 PEA 96 4PK H43 H43 H 0 1 N N N -6.981 92.677 44.309 8.822 1.003 -0.925 H11 PEA 97 4PK H44 H44 H 0 1 N N N -6.136 91.549 43.195 9.284 -0.311 0.183 H12 PEA 98 4PK H42 H42 H 0 1 N N N -4.048 92.120 44.635 6.867 0.822 1.105 HN2 PEA 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4PK N18 C17 DOUB N N 1 4PK N19 C17 SING N N 2 4PK C07 C08 DOUB Y N 3 4PK C07 C06 SING Y N 4 4PK C17 N16 SING N N 5 4PK C08 C09 SING Y N 6 4PK C06 C05 DOUB Y N 7 4PK N16 O15 SING N N 8 4PK O15 C14 SING N N 9 4PK C09 C10 DOUB Y N 10 4PK C14 C13 SING N N 11 4PK C33 C32 SING N N 12 4PK C05 C10 SING Y N 13 4PK C05 C04 SING N N 14 4PK C34 C32 SING N N 15 4PK C13 C12 SING N N 16 4PK C32 C31 SING N N 17 4PK C04 O03 SING N N 18 4PK C12 N01 SING N N 19 4PK C12 C20 SING N N 20 4PK N01 C02 SING N N 21 4PK C02 O11 DOUB N N 22 4PK C02 O03 SING N N 23 4PK C31 C30 SING N N 24 4PK C20 N22 SING N N 25 4PK C20 O21 DOUB N N 26 4PK N22 C23 SING N N 27 4PK C30 N29 SING N N 28 4PK C30 C35 SING N N 29 4PK O28 C27 DOUB N N 30 4PK N29 C27 SING N N 31 4PK C27 C23 SING N N 32 4PK C35 O36 SING N N 33 4PK C35 C37 SING N N 34 4PK C23 C24 SING N N 35 4PK C41 N40 SING N N 36 4PK C41 C42 SING N N 37 4PK O39 C38 DOUB N N 38 4PK N40 C38 SING N N 39 4PK C38 C37 SING N N 40 4PK C24 C25 SING N N 41 4PK C24 C26 SING N N 42 4PK C42 C43 SING N N 43 4PK C43 C44 DOUB Y N 44 4PK C43 C48 SING Y N 45 4PK C44 C45 SING Y N 46 4PK C48 C47 DOUB Y N 47 4PK C45 C46 DOUB Y N 48 4PK C47 C46 SING Y N 49 4PK C10 H1 SING N N 50 4PK C13 H2 SING N N 51 4PK C13 H3 SING N N 52 4PK C24 H4 SING N N 53 4PK C26 H5 SING N N 54 4PK C26 H6 SING N N 55 4PK C26 H7 SING N N 56 4PK N01 H8 SING N N 57 4PK C04 H9 SING N N 58 4PK C04 H10 SING N N 59 4PK C06 H11 SING N N 60 4PK C07 H12 SING N N 61 4PK C08 H13 SING N N 62 4PK C09 H14 SING N N 63 4PK C12 H15 SING N N 64 4PK C14 H16 SING N N 65 4PK C14 H17 SING N N 66 4PK N16 H18 SING N N 67 4PK N18 H19 SING N N 68 4PK N19 H20 SING N N 69 4PK N19 H21 SING N N 70 4PK N22 H22 SING N N 71 4PK C23 H23 SING N N 72 4PK C25 H24 SING N N 73 4PK C25 H25 SING N N 74 4PK C25 H26 SING N N 75 4PK N29 H27 SING N N 76 4PK C30 H28 SING N N 77 4PK C31 H29 SING N N 78 4PK C31 H30 SING N N 79 4PK C32 H31 SING N N 80 4PK C33 H32 SING N N 81 4PK C33 H33 SING N N 82 4PK C33 H34 SING N N 83 4PK C34 H35 SING N N 84 4PK C34 H36 SING N N 85 4PK C34 H37 SING N N 86 4PK C35 H38 SING N N 87 4PK O36 H39 SING N N 88 4PK C37 H40 SING N N 89 4PK C37 H41 SING N N 90 4PK N40 H42 SING N N 91 4PK C41 H43 SING N N 92 4PK C41 H44 SING N N 93 4PK C42 H45 SING N N 94 4PK C42 H46 SING N N 95 4PK C44 H47 SING N N 96 4PK C45 H48 SING N N 97 4PK C46 H49 SING N N 98 4PK C47 H50 SING N N 99 4PK C48 H51 SING N N 100 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4PK SMILES ACDLabs 12.01 "c2c(COC(=O)NC(C(NC(C(C)C)C(=O)NC(C(O)CC(=O)NCCc1ccccc1)CC(C)C)=O)CCON\C(=N)N)cccc2" 4PK InChI InChI 1.03 ;InChI=1S/C34H51N7O7/c1-22(2)19-27(28(42)20-29(43)37-17-15-24-11-7-5-8-12-24)38-32(45)30(23(3)4)40-31(44)26(16-18-48-41-33(35)36)39-34(46)47-21-25-13-9-6-10-14-25/h5-14,22-23,26-28,30,42H,15-21H2,1-4H3,(H,37,43)(H,38,45)(H,39,46)(H,40,44)(H4,35,36,41)/t26-,27-,28-,30-/m0/s1 ; 4PK InChIKey InChI 1.03 VAHRPHLZONNTFF-NUISNXNRSA-N 4PK SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)[C@H](CCONC(N)=N)NC(=O)OCc1ccccc1)C(C)C)[C@@H](O)CC(=O)NCCc2ccccc2" 4PK SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)[CH](CCONC(N)=N)NC(=O)OCc1ccccc1)C(C)C)[CH](O)CC(=O)NCCc2ccccc2" 4PK SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C(/N)\NOCC[C@@H](C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(C)C)[C@H](CC(=O)NCCc1ccccc1)O)NC(=O)OCc2ccccc2" 4PK SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)CC(C(CC(=O)NCCc1ccccc1)O)NC(=O)C(C(C)C)NC(=O)C(CCONC(=N)N)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4PK "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-O-carbamimidamido-L-homoseryl-N-{(3S,4S)-3-hydroxy-6-methyl-1-oxo-1-[(2-phenylethyl)amino]heptan-4-yl}-L-valinamide" 4PK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(phenylmethyl) N-[(2S)-4-carbamimidamidooxy-1-[[(2S)-3-methyl-1-[[(3S,4S)-6-methyl-3-oxidanyl-1-oxidanylidene-1-(2-phenylethylamino)heptan-4-yl]amino]-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4PK "Create component" 2015-05-01 RCSB 4PK "Initial release" 2015-07-15 RCSB #