data_4PP # _chem_comp.id 4PP _chem_comp.name ;(2S)-(3'-AMIDINO-3-BIPHENYL)-5-(4-PYRIDYLAMINO)PENTANOIC ACID ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.462 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4PP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XKA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4PP C1C C1C C 0 1 N N N 0.520 16.439 19.171 -2.808 -0.097 -1.111 C1C 4PP 1 4PP O2 O2 O 0 1 N N N 0.048 15.301 19.301 -3.566 0.579 -0.459 O2 4PP 2 4PP O3 O3 O 0 1 N N N 1.696 16.772 19.787 -3.231 -0.675 -2.246 O3 4PP 3 4PP N1P N1P N 0 1 Y N N -1.637 26.005 17.839 2.359 0.205 -8.675 N1P 4PP 4 4PP C2P C2P C 0 1 Y N N -2.508 25.304 16.982 1.450 -0.747 -8.761 C2P 4PP 5 4PP C3P C3P C 0 1 Y N N -2.583 23.898 17.062 0.674 -1.085 -7.673 C3P 4PP 6 4PP C4P C4P C 0 1 Y N N -1.790 23.196 17.993 0.861 -0.404 -6.470 C4P 4PP 7 4PP C5P C5P C 0 1 Y N N -0.913 23.909 18.858 1.827 0.599 -6.422 C5P 4PP 8 4PP C6P C6P C 0 1 Y N N -0.842 25.307 18.776 2.566 0.872 -7.554 C6P 4PP 9 4PP N1 N1 N 0 1 N N N -1.902 21.714 18.039 0.098 -0.715 -5.348 N1 4PP 10 4PP C1 C1 C 0 1 N N S -0.230 17.466 18.299 -1.386 -0.293 -0.651 C1 4PP 11 4PP C2 C2 C 0 1 N N N 0.096 18.897 18.734 -0.427 0.238 -1.718 C2 4PP 12 4PP C3 C3 C 0 1 N N N -1.227 19.594 19.036 -0.648 -0.520 -3.027 C3 4PP 13 4PP C4 C4 C 0 1 N N N -1.018 21.104 19.056 0.310 0.011 -4.094 C4 4PP 14 4PP N1A N1A N 0 1 N N N 4.933 20.312 10.341 2.656 1.346 6.870 N1A 4PP 15 4PP N2A N2A N 0 1 N N N 3.174 18.887 10.025 2.501 -0.500 8.267 N2A 4PP 16 4PP C1A C1A C 0 1 N N N 4.081 19.423 10.817 2.130 0.184 7.131 C1A 4PP 17 4PP C1D C1D C 0 1 Y N N 0.718 16.784 14.071 -0.772 1.843 3.004 C1D 4PP 18 4PP C2D C2D C 0 1 Y N N -0.485 16.274 14.632 -1.150 2.517 1.861 C2D 4PP 19 4PP C3D C3D C 0 1 Y N N -0.780 16.503 16.001 -1.348 1.824 0.680 C3D 4PP 20 4PP C4D C4D C 0 1 Y N N 0.124 17.241 16.820 -1.168 0.454 0.638 C4D 4PP 21 4PP C5D C5D C 0 1 Y N N 1.339 17.756 16.261 -0.784 -0.229 1.774 C5D 4PP 22 4PP C6D C6D C 0 1 Y N N 1.639 17.529 14.883 -0.589 0.462 2.967 C6D 4PP 23 4PP C1B C1B C 0 1 Y N N 5.330 18.733 14.436 -0.362 -2.193 5.623 C1B 4PP 24 4PP C2B C2B C 0 1 Y N N 4.147 18.212 15.037 -0.739 -1.512 4.482 C2B 4PP 25 4PP C3B C3B C 0 1 Y N N 2.949 18.089 14.263 -0.182 -0.267 4.194 C3B 4PP 26 4PP C4B C4B C 0 1 Y N N 2.952 18.489 12.901 0.751 0.291 5.060 C4B 4PP 27 4PP C5B C5B C 0 1 Y N N 4.126 19.005 12.299 1.132 -0.401 6.206 C5B 4PP 28 4PP C6B C6B C 0 1 Y N N 5.319 19.130 13.065 0.567 -1.647 6.484 C6B 4PP 29 4PP HO3 HO3 H 0 1 N N N 2.058 17.644 19.687 -4.144 -0.550 -2.541 HO3 4PP 30 4PP H2P H2P H 0 1 N N N -3.127 25.852 16.252 1.312 -1.269 -9.697 H2P 4PP 31 4PP H3P H3P H 0 1 N N N -3.264 23.345 16.393 -0.067 -1.866 -7.751 H3P 4PP 32 4PP H5P H5P H 0 1 N N N -0.286 23.376 19.593 2.001 1.149 -5.509 H5P 4PP 33 4PP H6P H6P H 0 1 N N N -0.161 25.857 19.447 3.320 1.645 -7.525 H6P 4PP 34 4PP H1N H1N H 0 1 N N N -1.736 21.306 17.118 -0.573 -1.413 -5.396 H1N 4PP 35 4PP H1 H1 H 0 1 N N N -1.327 17.321 18.431 -1.199 -1.355 -0.492 H1 4PP 36 4PP H21 1H2 H 0 1 N N N 0.815 18.940 19.584 -0.614 1.300 -1.877 H21 4PP 37 4PP H22 2H2 H 0 1 N N N 0.718 19.447 17.990 0.601 0.096 -1.385 H22 4PP 38 4PP H31 1H3 H 0 1 N N N -2.033 19.290 18.327 -0.461 -1.582 -2.868 H31 4PP 39 4PP H32 2H3 H 0 1 N N N -1.692 19.221 19.978 -1.676 -0.379 -3.360 H32 4PP 40 4PP H41 1H4 H 0 1 N N N 0.051 21.389 18.920 0.123 1.073 -4.254 H41 4PP 41 4PP H42 2H4 H 0 1 N N N -1.166 21.543 20.070 1.338 -0.130 -3.761 H42 4PP 42 4PP HN1 HN1 H 0 1 N N N 5.857 20.085 10.708 2.394 1.828 6.070 HN1 4PP 43 4PP HN21 1HN2 H 0 0 N N N 2.515 18.200 10.392 3.154 -0.116 8.873 HN21 4PP 44 4PP HN22 2HN2 H 0 0 N N N 3.649 18.478 9.220 2.106 -1.364 8.464 HN22 4PP 45 4PP H1D H1D H 0 1 N N N 0.936 16.601 13.005 -0.618 2.385 3.926 H1D 4PP 46 4PP H2D H2D H 0 1 N N N -1.189 15.701 14.005 -1.293 3.587 1.888 H2D 4PP 47 4PP H3D H3D H 0 1 N N N -1.715 16.105 16.430 -1.644 2.356 -0.212 H3D 4PP 48 4PP H5D H5D H 0 1 N N N 2.042 18.326 16.890 -0.644 -1.299 1.740 H5D 4PP 49 4PP H1B H1B H 0 1 N N N 6.253 18.828 15.031 -0.796 -3.158 5.842 H1B 4PP 50 4PP H2B H2B H 0 1 N N N 4.158 17.905 16.096 -1.467 -1.945 3.812 H2B 4PP 51 4PP H4B H4B H 0 1 N N N 2.030 18.397 12.302 1.185 1.256 4.841 H4B 4PP 52 4PP H6B H6B H 0 1 N N N 6.232 19.533 12.597 0.858 -2.184 7.375 H6B 4PP 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4PP C1C O2 DOUB N N 1 4PP C1C O3 SING N N 2 4PP C1C C1 SING N N 3 4PP O3 HO3 SING N N 4 4PP N1P C2P DOUB Y N 5 4PP N1P C6P SING Y N 6 4PP C2P C3P SING Y N 7 4PP C2P H2P SING N N 8 4PP C3P C4P DOUB Y N 9 4PP C3P H3P SING N N 10 4PP C4P C5P SING Y N 11 4PP C4P N1 SING N N 12 4PP C5P C6P DOUB Y N 13 4PP C5P H5P SING N N 14 4PP C6P H6P SING N N 15 4PP N1 C4 SING N N 16 4PP N1 H1N SING N N 17 4PP C1 C2 SING N N 18 4PP C1 C4D SING N N 19 4PP C1 H1 SING N N 20 4PP C2 C3 SING N N 21 4PP C2 H21 SING N N 22 4PP C2 H22 SING N N 23 4PP C3 C4 SING N N 24 4PP C3 H31 SING N N 25 4PP C3 H32 SING N N 26 4PP C4 H41 SING N N 27 4PP C4 H42 SING N N 28 4PP N1A C1A DOUB N N 29 4PP N1A HN1 SING N N 30 4PP N2A C1A SING N N 31 4PP N2A HN21 SING N N 32 4PP N2A HN22 SING N N 33 4PP C1A C5B SING N N 34 4PP C1D C2D DOUB Y N 35 4PP C1D C6D SING Y N 36 4PP C1D H1D SING N N 37 4PP C2D C3D SING Y N 38 4PP C2D H2D SING N N 39 4PP C3D C4D DOUB Y N 40 4PP C3D H3D SING N N 41 4PP C4D C5D SING Y N 42 4PP C5D C6D DOUB Y N 43 4PP C5D H5D SING N N 44 4PP C6D C3B SING Y N 45 4PP C1B C2B DOUB Y N 46 4PP C1B C6B SING Y N 47 4PP C1B H1B SING N N 48 4PP C2B C3B SING Y N 49 4PP C2B H2B SING N N 50 4PP C3B C4B DOUB Y N 51 4PP C4B C5B SING Y N 52 4PP C4B H4B SING N N 53 4PP C5B C6B DOUB Y N 54 4PP C6B H6B SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4PP SMILES ACDLabs 10.04 "O=C(O)C(c2cccc(c1cc(C(=[N@H])N)ccc1)c2)CCCNc3ccncc3" 4PP SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1cccc(c1)c2cccc(c2)[C@H](CCCNc3ccncc3)C(O)=O" 4PP SMILES CACTVS 3.341 "NC(=N)c1cccc(c1)c2cccc(c2)[CH](CCCNc3ccncc3)C(O)=O" 4PP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)[C@H](CCCNc2ccncc2)C(=O)O)c3cccc(c3)C(=N)N" 4PP SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)C(CCCNc2ccncc2)C(=O)O)c3cccc(c3)C(=N)N" 4PP InChI InChI 1.03 "InChI=1S/C23H24N4O2/c24-22(25)19-7-2-5-17(15-19)16-4-1-6-18(14-16)21(23(28)29)8-3-11-27-20-9-12-26-13-10-20/h1-2,4-7,9-10,12-15,21H,3,8,11H2,(H3,24,25)(H,26,27)(H,28,29)/t21-/m0/s1" 4PP InChIKey InChI 1.03 FJEAIYBDDQAFGU-NRFANRHFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4PP "SYSTEMATIC NAME" ACDLabs 10.04 ;(2S)-2-(3'-carbamimidoylbiphenyl-3-yl)-5-(pyridin-4-ylamino)pentanoic acid ; 4PP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[3-(3-carbamimidoylphenyl)phenyl]-5-(pyridin-4-ylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4PP "Create component" 1999-07-08 RCSB 4PP "Modify aromatic_flag" 2011-06-04 RCSB 4PP "Modify descriptor" 2011-06-04 RCSB #