data_4PT
#
_chem_comp.id 4PT
_chem_comp.name
;(2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5-TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-(1-HYDROXY
BUTOXY)PROPYL BUTYRATE
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H36 O22 P4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "DIC4-PHOSPHATIDYLINOSITOL(3,4,5)TRISPHOSPHATE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-06-21
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 716.350
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4PT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1W1G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4PT O0F O0F O 0 1 N N N 11.517 38.521 0.554 0.294 -2.241 -8.546 O0F 4PT 1
4PT C0E C0E C 0 1 N N N 10.690 37.426 0.100 0.513 -1.143 -7.666 C0E 4PT 2
4PT C0C C0C C 0 1 N N R 9.693 37.105 1.215 -0.433 -1.265 -6.479 C0C 4PT 3
4PT O0D O0D O 0 1 N N N 8.946 35.932 0.901 -0.161 -2.505 -5.823 O0D 4PT 4
4PT C0B C0B C 0 1 N N N 10.383 36.857 2.565 -0.226 -0.129 -5.483 C0B 4PT 5
4PT OP1 OP1 O 0 1 N N N 9.373 36.741 3.576 1.103 -0.157 -4.992 OP1 4PT 6
4PT P1 P1 P 0 1 N N S 9.623 37.416 4.970 1.383 0.385 -3.491 P1 4PT 7
4PT OP3 OP3 O 0 1 N N N 8.304 37.033 5.836 0.763 1.880 -3.508 OP3 4PT 8
4PT OP2 OP2 O 0 1 N N N 9.855 38.885 4.872 2.816 0.320 -3.048 OP2 4PT 9
4PT O1 O1 O 0 1 N N N 10.932 36.770 5.561 0.357 -0.474 -2.587 O1 4PT 10
4PT C1 C1 C 0 1 N N N 10.876 35.356 5.840 0.219 -0.178 -1.198 C1 4PT 11
4PT C2 C2 C 0 1 N N S 10.539 35.069 7.324 1.582 -0.367 -0.532 C2 4PT 12
4PT O2 O2 O 0 1 N N N 11.525 35.653 8.193 2.028 -1.714 -0.725 O2 4PT 13
4PT C3 C3 C 0 1 N N S 10.590 33.529 7.549 1.478 -0.095 0.968 C3 4PT 14
4PT O3 O3 O 0 1 N N N 10.328 33.238 8.935 2.759 -0.310 1.560 O3 4PT 15
4PT P3 P3 P 0 1 N N N 8.997 32.361 9.169 3.997 0.588 1.044 P3 4PT 16
4PT O11 O11 O 0 1 N N N 7.761 33.132 8.616 5.200 0.205 2.055 O11 4PT 17
4PT O10 O10 O 0 1 N N N 8.902 32.306 10.783 3.575 2.076 1.517 O10 4PT 18
4PT O12 O12 O 0 1 N N N 9.070 31.012 8.487 4.318 0.454 -0.415 O12 4PT 19
4PT C4 C4 C 0 1 N N N 11.957 32.926 7.201 0.442 -1.002 1.639 C4 4PT 20
4PT O4 O4 O 0 1 N N N 11.897 31.499 7.268 0.304 -0.569 2.995 O4 4PT 21
4PT P4 P4 P 0 1 N N N 12.462 30.732 8.608 -0.736 -1.360 3.942 P4 4PT 22
4PT OP5 OP5 O 0 1 N N N 11.125 29.984 9.038 -0.479 -0.730 5.409 OP5 4PT 23
4PT OP6 OP6 O 0 1 N N N 13.549 29.774 8.016 -0.067 -2.829 4.045 OP6 4PT 24
4PT OP4 OP4 O 0 1 N N N 13.155 31.690 9.571 -2.162 -1.344 3.477 OP4 4PT 25
4PT C5 C5 C 0 1 N N R 12.369 33.292 5.756 -0.924 -0.915 0.947 C5 4PT 26
4PT O5 O5 O 0 1 N N N 13.730 32.958 5.652 -1.768 -1.952 1.456 O5 4PT 27
4PT P5 P5 P 0 1 N N N 14.154 31.589 4.862 -1.328 -3.482 1.201 P5 4PT 28
4PT OP8 OP8 O 0 1 N N N 14.949 30.783 5.998 -1.466 -3.664 -0.400 OP8 4PT 29
4PT OP7 OP7 O 0 1 N N N 15.304 31.955 3.862 -2.592 -4.310 1.779 OP7 4PT 30
4PT OP9 OP9 O 0 1 N N N 12.938 30.864 4.384 0.001 -3.870 1.779 OP9 4PT 31
4PT C6 C6 C 0 1 N N S 12.231 34.783 5.495 -0.843 -1.089 -0.573 C6 4PT 32
4PT O6 O6 O 0 1 N N N 12.483 35.004 4.089 -2.124 -0.751 -1.114 O6 4PT 33
4PT C0L C0L C 0 1 N N N ? ? ? 1.078 -2.271 -9.669 C0L 4PT 34
4PT O0M O0M O 0 1 N N N ? ? ? 1.930 -1.444 -9.964 O0M 4PT 35
4PT C0N C0N C 0 1 N N N ? ? ? 0.722 -3.489 -10.490 C0N 4PT 36
4PT C0P C0P C 0 1 N N N ? ? ? 1.543 -3.572 -11.775 C0P 4PT 37
4PT C0Q C0Q C 0 1 N N N ? ? ? 1.200 -4.817 -12.576 C0Q 4PT 38
4PT C0G C0G C 0 1 N N S ? ? ? -1.326 -3.058 -5.216 C0G 4PT 39
4PT O0H O0H O 0 1 N N N ? ? ? -1.851 -2.209 -4.199 O0H 4PT 40
4PT C0I C0I C 0 1 N N N ? ? ? -0.933 -4.378 -4.547 C0I 4PT 41
4PT C0J C0J C 0 1 N N N ? ? ? -2.112 -5.051 -3.843 C0J 4PT 42
4PT C0K C0K C 0 1 N N N ? ? ? -1.704 -6.376 -3.219 C0K 4PT 43
4PT H0E1 1H0E H 0 0 N N N 10.153 37.713 -0.816 1.560 -1.174 -7.345 H0E1 4PT 44
4PT H0E2 2H0E H 0 0 N N N 11.308 36.546 -0.129 0.329 -0.220 -8.225 H0E2 4PT 45
4PT H0C H0C H 0 1 N N N 9.038 37.985 1.295 -1.474 -1.308 -6.818 H0C 4PT 46
4PT H0B1 1H0B H 0 0 N N N 10.972 35.929 2.518 -0.904 -0.214 -4.629 H0B1 4PT 47
4PT H0B2 2H0B H 0 0 N N N 11.059 37.692 2.802 -0.376 0.845 -5.958 H0B2 4PT 48
4PT HP3 HP3 H 0 1 N N N 8.538 36.958 6.754 1.290 2.606 -3.904 HP3 4PT 49
4PT H1 H1 H 0 1 N N N 10.077 34.893 5.243 -0.097 0.869 -1.129 H1 4PT 50
4PT H2 H2 H 0 1 N N N 9.547 35.490 7.546 2.339 0.274 -0.996 H2 4PT 51
4PT HA HA H 0 1 N N N 12.335 35.782 7.713 1.250 -2.219 -1.001 HA 4PT 52
4PT H3 H3 H 0 1 N N N 9.831 33.087 6.886 1.225 0.957 1.144 H3 4PT 53
4PT H11 H11 H 0 1 N N N 7.144 33.289 9.321 6.090 0.585 1.899 H11 4PT 54
4PT H10 H10 H 0 1 N N N 9.777 32.295 11.152 4.128 2.837 1.239 H10 4PT 55
4PT H4 H4 H 0 1 N N N 12.684 33.328 7.922 0.794 -2.039 1.686 H4 4PT 56
4PT HP5 HP5 H 0 1 N N N 11.133 29.835 9.976 -1.050 -1.016 6.154 HP5 4PT 57
4PT HP6 HP6 H 0 1 N N N 13.341 29.580 7.110 -0.560 -3.543 4.502 HP6 4PT 58
4PT H5 H5 H 0 1 N N N 11.729 32.762 5.035 -1.421 0.029 1.201 H5 4PT 59
4PT HP8 HP8 H 0 1 N N N 15.106 29.893 5.704 -1.188 -4.512 -0.807 HP8 4PT 60
4PT HP7 HP7 H 0 1 N N N 14.949 32.029 2.984 -2.537 -5.288 1.827 HP7 4PT 61
4PT H6 H6 H 0 1 N N N 12.952 35.295 6.149 -0.671 -2.138 -0.843 H6 4PT 62
4PT HB HB H 0 1 N N N 11.657 35.052 3.623 -2.780 -1.146 -0.522 HB 4PT 63
4PT H0N1 1H0N H 0 0 N N N ? ? ? 0.905 -4.379 -9.877 H0N1 4PT 64
4PT H0N2 2H0N H 0 0 N N N ? ? ? -0.344 -3.436 -10.735 H0N2 4PT 65
4PT H0P1 1H0P H 0 0 N N N ? ? ? 1.361 -2.683 -12.392 H0P1 4PT 66
4PT H0P2 2H0P H 0 0 N N N ? ? ? 2.613 -3.578 -11.536 H0P2 4PT 67
4PT H0Q1 1H0Q H 0 0 N N N ? ? ? 1.800 -4.856 -13.491 H0Q1 4PT 68
4PT H0Q2 2H0Q H 0 0 N N N ? ? ? 1.403 -5.724 -11.997 H0Q2 4PT 69
4PT H0Q3 3H0Q H 0 0 N N N ? ? ? 0.143 -4.821 -12.862 H0Q3 4PT 70
4PT H0G H0G H 0 1 N N N ? ? ? -2.104 -3.247 -5.966 H0G 4PT 71
4PT H0H H0H H 0 1 N N N ? ? ? -2.548 -1.668 -4.608 H0H 4PT 72
4PT H0I1 1H0I H 0 0 N N N ? ? ? -0.136 -4.190 -3.815 H0I1 4PT 73
4PT H0I2 2H0I H 0 0 N N N ? ? ? -0.508 -5.054 -5.299 H0I2 4PT 74
4PT H0J1 1H0J H 0 0 N N N ? ? ? -2.510 -4.397 -3.059 H0J1 4PT 75
4PT H0J2 2H0J H 0 0 N N N ? ? ? -2.921 -5.227 -4.561 H0J2 4PT 76
4PT H0K1 1H0K H 0 0 N N N ? ? ? -1.333 -7.071 -3.980 H0K1 4PT 77
4PT H0K2 2H0K H 0 0 N N N ? ? ? -0.916 -6.232 -2.473 H0K2 4PT 78
4PT H0K3 3H0K H 0 0 N N N ? ? ? -2.561 -6.842 -2.723 H0K3 4PT 79
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4PT O0F C0E SING N N 1
4PT O0F C0L SING N N 2
4PT C0E C0C SING N N 3
4PT C0E H0E1 SING N N 4
4PT C0E H0E2 SING N N 5
4PT C0C O0D SING N N 6
4PT C0C C0B SING N N 7
4PT C0C H0C SING N N 8
4PT O0D C0G SING N N 9
4PT C0B OP1 SING N N 10
4PT C0B H0B1 SING N N 11
4PT C0B H0B2 SING N N 12
4PT OP1 P1 SING N N 13
4PT P1 OP3 SING N N 14
4PT P1 OP2 DOUB N N 15
4PT P1 O1 SING N N 16
4PT OP3 HP3 SING N N 17
4PT O1 C1 SING N N 18
4PT C1 C2 SING N N 19
4PT C1 C6 SING N N 20
4PT C1 H1 SING N N 21
4PT C2 O2 SING N N 22
4PT C2 C3 SING N N 23
4PT C2 H2 SING N N 24
4PT O2 HA SING N N 25
4PT C3 O3 SING N N 26
4PT C3 C4 SING N N 27
4PT C3 H3 SING N N 28
4PT O3 P3 SING N N 29
4PT P3 O11 SING N N 30
4PT P3 O10 SING N N 31
4PT P3 O12 DOUB N N 32
4PT O11 H11 SING N N 33
4PT O10 H10 SING N N 34
4PT C4 O4 SING N N 35
4PT C4 C5 SING N N 36
4PT C4 H4 SING N N 37
4PT O4 P4 SING N N 38
4PT P4 OP5 SING N N 39
4PT P4 OP6 SING N N 40
4PT P4 OP4 DOUB N N 41
4PT OP5 HP5 SING N N 42
4PT OP6 HP6 SING N N 43
4PT C5 O5 SING N N 44
4PT C5 C6 SING N N 45
4PT C5 H5 SING N N 46
4PT O5 P5 SING N N 47
4PT P5 OP8 SING N N 48
4PT P5 OP7 SING N N 49
4PT P5 OP9 DOUB N N 50
4PT OP8 HP8 SING N N 51
4PT OP7 HP7 SING N N 52
4PT C6 O6 SING N N 53
4PT C6 H6 SING N N 54
4PT O6 HB SING N N 55
4PT C0L O0M DOUB N N 56
4PT C0L C0N SING N N 57
4PT C0N C0P SING N N 58
4PT C0N H0N1 SING N N 59
4PT C0N H0N2 SING N N 60
4PT C0P C0Q SING N N 61
4PT C0P H0P1 SING N N 62
4PT C0P H0P2 SING N N 63
4PT C0Q H0Q1 SING N N 64
4PT C0Q H0Q2 SING N N 65
4PT C0Q H0Q3 SING N N 66
4PT C0G O0H SING N N 67
4PT C0G C0I SING N N 68
4PT C0G H0G SING N N 69
4PT O0H H0H SING N N 70
4PT C0I C0J SING N N 71
4PT C0I H0I1 SING N N 72
4PT C0I H0I2 SING N N 73
4PT C0J C0K SING N N 74
4PT C0J H0J1 SING N N 75
4PT C0J H0J2 SING N N 76
4PT C0K H0K1 SING N N 77
4PT C0K H0K2 SING N N 78
4PT C0K H0K3 SING N N 79
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4PT SMILES ACDLabs 10.04 "O=P(OC1C(OP(=O)(O)O)C(O)C(OP(=O)(O)OCC(OC(O)CCC)COC(=O)CCC)C(O)C1OP(=O)(O)O)(O)O"
4PT SMILES_CANONICAL CACTVS 3.341 "CCCC(O)O[C@H](COC(=O)CCC)CO[P@](O)(=O)O[C@@H]1[C@H](O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H]1O"
4PT SMILES CACTVS 3.341 "CCCC(O)O[CH](COC(=O)CCC)CO[P](O)(=O)O[CH]1[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O"
4PT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCC[C@@H](O)O[C@H](COC(=O)CCC)CO[P@@](=O)(O)OC1[C@@H]([C@@H](C([C@@H]([C@H]1O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O"
4PT SMILES "OpenEye OEToolkits" 1.5.0 "CCCC(O)OC(COC(=O)CCC)COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)O"
4PT InChI InChI 1.03 "InChI=1S/C17H36O22P4/c1-3-5-10(18)33-7-9(35-11(19)6-4-2)8-34-43(31,32)39-14-12(20)15(36-40(22,23)24)17(38-42(28,29)30)16(13(14)21)37-41(25,26)27/h9,11-17,19-21H,3-8H2,1-2H3,(H,31,32)(H2,22,23,24)(H2,25,26,27)(H2,28,29,30)/t9-,11?,12+,13+,14-,15+,16-,17-/m1/s1"
4PT InChIKey InChI 1.03 JPQZDANYJXWKKH-UASGXTILSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4PT "SYSTEMATIC NAME" ACDLabs 10.04 "(2R)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}-2-(1-hydroxybutoxy)propyl butanoate"
4PT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R)-3-[[(2S,3S,5R,6S)-2,6-dihydroxy-3,4,5-triphosphonooxy-cyclohexyl]oxy-hydroxy-phosphoryl]oxy-2-[(1S)-1-hydroxybutoxy]propyl] butanoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4PT "Create component" 2004-06-21 EBI
4PT "Modify descriptor" 2011-06-04 RCSB
4PT "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 4PT
_pdbx_chem_comp_synonyms.name "DIC4-PHOSPHATIDYLINOSITOL(3,4,5)TRISPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##