data_4R1 # _chem_comp.id 4R1 _chem_comp.name 2-amino-2-deoxy-6-O-phosphono-beta-D-glucopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H14 N O8 P" _chem_comp.mon_nstd_parent_comp_id GCS _chem_comp.pdbx_synonyms ;beta-glucosamine-6-phosphate; 6-O-phosphono-beta-D-glucosamine; 2-amino-2-deoxy-6-O-phosphono-beta-D-glucose; 2-amino-2-deoxy-6-O-phosphono-D-glucose; 2-amino-2-deoxy-6-O-phosphono-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-05-13 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.151 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4R1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ZSI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 4R1 beta-glucosamine-6-phosphate PDB ? 2 4R1 6-O-phosphono-beta-D-glucosamine PDB ? 3 4R1 2-amino-2-deoxy-6-O-phosphono-beta-D-glucose PDB ? 4 4R1 2-amino-2-deoxy-6-O-phosphono-D-glucose PDB ? 5 4R1 2-amino-2-deoxy-6-O-phosphono-glucose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4R1 C2 C2 C 0 1 N N R -4.105 15.753 27.994 -3.202 0.562 -0.230 C2 4R1 1 4R1 C4 C4 C 0 1 N N S -2.770 15.872 30.113 -1.535 -1.294 -0.241 C4 4R1 2 4R1 C5 C5 C 0 1 N N R -1.876 16.846 29.370 -0.497 -0.301 0.288 C5 4R1 3 4R1 C6 C6 C 0 1 N N N -0.450 16.777 29.865 0.889 -0.683 -0.236 C6 4R1 4 4R1 O1 O1 O 0 1 N Y N -3.058 16.713 25.988 -2.319 2.812 -0.180 O1 4R1 5 4R1 OAF OAF O 0 1 N N N 1.177 19.369 30.562 4.264 1.081 0.953 OAF 4R1 6 4R1 PAP PAP P 0 1 N N N 1.646 18.353 29.549 3.444 0.054 0.023 PAP 4R1 7 4R1 OAG OAG O 0 1 N N N 2.452 17.216 30.152 3.699 0.411 -1.526 OAG 4R1 8 4R1 OAB OAB O 0 1 N N N 2.241 18.944 28.291 3.901 -1.328 0.292 OAB 4R1 9 4R1 O6 O6 O 0 1 N N N 0.297 17.665 29.026 1.872 0.172 0.350 O6 4R1 10 4R1 O5 O5 O 0 1 N N N -1.858 16.501 27.984 -0.829 1.015 -0.158 O5 4R1 11 4R1 C1 C1 C 0 1 N N R -3.138 16.776 27.420 -2.099 1.483 0.299 C1 4R1 12 4R1 N2 N2 N 0 1 N N N -5.407 15.910 27.359 -4.504 1.005 0.286 N2 4R1 13 4R1 C3 C3 C 0 1 N N R -4.181 15.923 29.513 -2.927 -0.871 0.238 C3 4R1 14 4R1 O3 O3 O 0 1 N N N -4.966 14.879 30.088 -3.910 -1.750 -0.312 O3 4R1 15 4R1 O4 O4 O 0 1 N N N -2.744 16.183 31.521 -1.238 -2.603 0.251 O4 4R1 16 4R1 H2 H1 H 0 1 N N N -3.715 14.747 27.778 -3.211 0.593 -1.319 H2 4R1 17 4R1 H4 H2 H 0 1 N N N -2.373 14.857 29.960 -1.511 -1.301 -1.331 H4 4R1 18 4R1 H5 H3 H 0 1 N N N -2.260 17.868 29.507 -0.493 -0.326 1.378 H5 4R1 19 4R1 H61 H4 H 0 1 N N N -0.063 15.751 29.777 1.104 -1.719 0.028 H61 4R1 20 4R1 H62 H5 H 0 1 N N N -0.392 17.102 30.914 0.910 -0.573 -1.320 H62 4R1 21 4R1 HO1 H6 H 0 1 N Y N -3.912 16.897 25.614 -1.656 3.451 0.116 HO1 4R1 22 4R1 H7 H7 H 0 1 N N N 1.338 20.245 30.231 5.220 1.063 0.809 H7 4R1 23 4R1 H8 H8 H 0 1 N N N 3.224 17.058 29.621 3.422 1.304 -1.774 H8 4R1 24 4R1 H1 H9 H 0 1 N N N -3.470 17.779 27.726 -2.117 1.482 1.389 H1 4R1 25 4R1 HN21 H10 H 0 0 N N N -6.045 15.238 27.735 -4.707 1.948 -0.010 HN21 4R1 26 4R1 HN22 H11 H 0 0 N Y N -5.753 16.832 27.533 -5.238 0.372 0.007 HN22 4R1 27 4R1 H3 H13 H 0 1 N N N -4.627 16.903 29.739 -2.967 -0.913 1.326 H3 4R1 28 4R1 HO3 H14 H 0 1 N Y N -5.006 14.995 31.030 -4.817 -1.536 -0.054 HO3 4R1 29 4R1 HO4 H15 H 0 1 N Y N -3.303 15.575 31.990 -1.858 -3.284 -0.043 HO4 4R1 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4R1 O1 C1 SING N N 1 4R1 N2 C2 SING N N 2 4R1 C1 O5 SING N N 3 4R1 C1 C2 SING N N 4 4R1 O5 C5 SING N N 5 4R1 C2 C3 SING N N 6 4R1 OAB PAP DOUB N N 7 4R1 O6 PAP SING N N 8 4R1 O6 C6 SING N N 9 4R1 C5 C6 SING N N 10 4R1 C5 C4 SING N N 11 4R1 C3 O3 SING N N 12 4R1 C3 C4 SING N N 13 4R1 PAP OAG SING N N 14 4R1 PAP OAF SING N N 15 4R1 C4 O4 SING N N 16 4R1 C2 H2 SING N N 17 4R1 C4 H4 SING N N 18 4R1 C5 H5 SING N N 19 4R1 C6 H61 SING N N 20 4R1 C6 H62 SING N N 21 4R1 O1 HO1 SING N N 22 4R1 OAF H7 SING N N 23 4R1 OAG H8 SING N N 24 4R1 C1 H1 SING N N 25 4R1 N2 HN21 SING N N 26 4R1 N2 HN22 SING N N 27 4R1 C3 H3 SING N N 28 4R1 O3 HO3 SING N N 29 4R1 O4 HO4 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4R1 SMILES ACDLabs 12.01 "C1(C(C(O)C(COP(O)(O)=O)OC1O)O)N" 4R1 InChI InChI 1.03 "InChI=1S/C6H14NO8P/c7-3-5(9)4(8)2(15-6(3)10)1-14-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6-/m1/s1" 4R1 InChIKey InChI 1.03 XHMJOUIAFHJHBW-QZABAPFNSA-N 4R1 SMILES_CANONICAL CACTVS 3.385 "N[C@H]1[C@H](O)O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O" 4R1 SMILES CACTVS 3.385 "N[CH]1[CH](O)O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O" 4R1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)N)O)O)OP(=O)(O)O" 4R1 SMILES "OpenEye OEToolkits" 1.9.2 "C(C1C(C(C(C(O1)O)N)O)O)OP(=O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4R1 "SYSTEMATIC NAME" ACDLabs 12.01 2-amino-2-deoxy-6-O-phosphono-beta-D-glucopyranose 4R1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R,3S,4R,5R,6R)-5-azanyl-3,4,6-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate" 4R1 "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-GlcpN6PO3 # _pdbx_chem_comp_related.comp_id 4R1 _pdbx_chem_comp_related.related_comp_id GCS _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 4R1 C1 GCS C1 "Carbohydrate core" 2 4R1 C2 GCS C2 "Carbohydrate core" 3 4R1 C3 GCS C3 "Carbohydrate core" 4 4R1 C4 GCS C4 "Carbohydrate core" 5 4R1 C5 GCS C5 "Carbohydrate core" 6 4R1 C6 GCS C6 "Carbohydrate core" 7 4R1 N2 GCS N2 "Carbohydrate core" 8 4R1 O1 GCS O1 "Carbohydrate core" 9 4R1 O3 GCS O3 "Carbohydrate core" 10 4R1 O4 GCS O4 "Carbohydrate core" 11 4R1 O5 GCS O5 "Carbohydrate core" 12 4R1 O6 GCS O6 "Carbohydrate core" 13 4R1 H2 GCS H2 "Carbohydrate core" 14 4R1 HN21 GCS HN21 "Carbohydrate core" 15 4R1 HN22 GCS HN22 "Carbohydrate core" 16 4R1 H3 GCS H3 "Carbohydrate core" 17 4R1 HO3 GCS HO3 "Carbohydrate core" 18 4R1 HO4 GCS HO4 "Carbohydrate core" 19 4R1 H4 GCS H4 "Carbohydrate core" 20 4R1 H5 GCS H5 "Carbohydrate core" 21 4R1 H61 GCS H61 "Carbohydrate core" 22 4R1 H62 GCS H62 "Carbohydrate core" 23 4R1 HO1 GCS HO1 "Carbohydrate core" 24 4R1 H1 GCS H1 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 4R1 "CARBOHYDRATE ISOMER" D PDB ? 4R1 "CARBOHYDRATE RING" pyranose PDB ? 4R1 "CARBOHYDRATE ANOMER" beta PDB ? 4R1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4R1 "Create component" 2015-05-13 EBI 4R1 "Initial release" 2016-06-08 RCSB 4R1 "Other modification" 2020-07-03 RCSB 4R1 "Modify parent residue" 2020-07-17 RCSB 4R1 "Modify name" 2020-07-17 RCSB 4R1 "Modify synonyms" 2020-07-17 RCSB 4R1 "Modify internal type" 2020-07-17 RCSB 4R1 "Modify linking type" 2020-07-17 RCSB 4R1 "Modify atom id" 2020-07-17 RCSB 4R1 "Modify component atom id" 2020-07-17 RCSB 4R1 "Modify leaving atom flag" 2020-07-17 RCSB ##