data_4TA # _chem_comp.id 4TA _chem_comp.name "P1-(5'-ADENOSYL)P4-(5'-(2'-DEOXY-THYMIDYL))TETRAPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C20 H25 N7 O20 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -4 _chem_comp.pdbx_initial_date 2003-05-20 _chem_comp.pdbx_modified_date 2012-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 807.342 _chem_comp.one_letter_code N _chem_comp.three_letter_code 4TA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1P73 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4TA C5M C5M C 0 1 N N N 95.820 89.344 -12.301 -5.263 6.680 -1.992 C5M 4TA 1 4TA C5 C5 C 0 1 N N N 97.106 90.073 -12.054 -5.943 5.405 -1.564 C5 4TA 2 4TA C6 C6 C 0 1 N N N 97.945 90.391 -13.109 -5.634 4.827 -0.384 C6 4TA 3 4TA N1 N1 N 0 1 N N N 99.100 91.041 -12.869 -6.261 3.670 -0.011 N1 4TA 4 4TA C1B C1* C 0 1 N N R 99.983 91.398 -13.981 -5.925 3.043 1.270 C1B 4TA 5 4TA C2B C2* C 0 1 N N N 100.834 90.247 -14.483 -7.150 3.073 2.205 C2B 4TA 6 4TA C3B C3* C 0 1 N N S 100.902 90.490 -15.979 -7.412 1.583 2.534 C3B 4TA 7 4TA O3B O3* O 0 1 N N N 102.121 91.113 -16.327 -7.751 1.417 3.912 O3B 4TA 8 4TA C4B C4* C 0 1 N N R 99.771 91.449 -16.322 -6.040 0.935 2.221 C4B 4TA 9 4TA C5B C5* C 0 1 N N N 98.723 90.809 -17.234 -6.207 -0.550 1.892 C5B 4TA 10 4TA "O5'" O5* O 0 1 N N N 98.934 89.395 -17.313 -4.921 -1.149 1.722 "O5'" 4TA 11 4TA PD PD P 0 1 N N N 97.830 88.413 -17.922 -4.719 -2.706 1.366 PD 4TA 12 4TA O2D O2D O -1 1 N N N 97.358 87.493 -16.831 -5.229 -3.572 2.539 O2D 4TA 13 4TA O1D O1D O 0 1 N N N 96.882 89.191 -18.805 -5.515 -3.050 0.087 O1D 4TA 14 4TA OCD OCD O 0 1 N N N 98.638 87.462 -18.906 -3.155 -3.001 1.120 OCD 4TA 15 4TA PC PC P 0 1 N N N 99.549 87.924 -20.147 -2.343 -4.171 0.369 PC 4TA 16 4TA O1C O1C O -1 1 N N N 98.973 89.073 -20.937 -2.359 -5.449 1.236 O1C 4TA 17 4TA O2C O2C O 0 1 N N N 100.967 87.982 -19.632 -3.007 -4.465 -0.995 O2C 4TA 18 4TA OBC OBC O 0 1 N N N 99.431 86.574 -21.038 -0.821 -3.701 0.134 OBC 4TA 19 4TA PB PB P 0 1 N N N 98.316 85.408 -20.869 0.354 -4.171 -0.862 PB 4TA 20 4TA O2B O2B O -1 1 N N N 96.933 85.989 -20.778 0.936 -5.516 -0.374 O2B 4TA 21 4TA O1B O1B O 0 1 N N N 98.811 84.416 -19.848 -0.218 -4.344 -2.287 O1B 4TA 22 4TA OAB OAB O 0 1 N N N 98.409 84.625 -22.262 1.517 -3.058 -0.882 OAB 4TA 23 4TA PA PA P 0 1 N N N 98.116 85.250 -23.716 2.708 -2.704 -1.906 PA 4TA 24 4TA O1A O1A O -1 1 N N N 96.873 84.577 -24.242 3.834 -3.753 -1.770 O1A 4TA 25 4TA O2A O2A O 0 1 N N N 98.202 86.762 -23.730 2.165 -2.716 -3.352 O2A 4TA 26 4TA OA OA O 0 1 N N N 99.378 84.613 -24.484 3.293 -1.243 -1.564 OA 4TA 27 4TA "C5'" "C5'" C 0 1 N N N 100.718 84.784 -24.026 4.289 -0.598 -2.360 "C5'" 4TA 28 4TA "C4'" "C4'" C 0 1 N N R 101.677 84.827 -25.221 4.616 0.770 -1.758 "C4'" 4TA 29 4TA "O1'" "O1'" O 0 1 N N N 101.922 83.511 -25.735 5.249 0.602 -0.478 "O1'" 4TA 30 4TA "C1'" "C1'" C 0 1 N N R 101.352 83.355 -27.043 6.204 1.676 -0.336 "C1'" 4TA 31 4TA "C2'" "C2'" C 0 1 N N R 100.539 84.625 -27.320 6.828 1.793 -1.750 "C2'" 4TA 32 4TA "O2'" "O2'" O 0 1 N N N 100.649 85.107 -28.642 7.347 3.106 -1.971 "O2'" 4TA 33 4TA "C3'" "C3'" C 0 1 N N S 101.107 85.652 -26.364 5.610 1.518 -2.666 "C3'" 4TA 34 4TA "O3'" "O3'" O 0 1 N N N 102.148 86.388 -26.988 5.042 2.747 -3.124 "O3'" 4TA 35 4TA N9A N9A N 0 1 Y N N 100.488 82.136 -27.045 7.228 1.328 0.652 N9A 4TA 36 4TA C8A C8A C 0 1 Y N N 99.221 81.881 -26.609 7.591 0.069 1.029 C8A 4TA 37 4TA N7A N7A N 0 1 Y N N 98.852 80.567 -26.845 8.531 0.127 1.927 N7A 4TA 38 4TA C5A C5A C 0 1 Y N N 99.980 80.032 -27.451 8.830 1.423 2.183 C5A 4TA 39 4TA C4A C4A C 0 1 Y N N 100.933 80.991 -27.552 8.002 2.209 1.364 C4A 4TA 40 4TA N3A N3A N 0 1 Y N N 102.144 80.743 -28.107 8.105 3.533 1.422 N3A 4TA 41 4TA C2A C2A C 0 1 Y N N 102.414 79.508 -28.567 8.972 4.104 2.231 C2A 4TA 42 4TA N1A N1A N 0 1 Y N N 101.493 78.529 -28.480 9.773 3.407 3.017 N1A 4TA 43 4TA C6A C6A C 0 1 Y N N 100.270 78.762 -27.928 9.736 2.079 3.034 C6A 4TA 44 4TA N6A N6A N 0 1 N N N 99.337 77.778 -27.838 10.581 1.358 3.860 N6A 4TA 45 4TA "O4'" O4* O 0 1 N N N 99.176 91.830 -15.079 -5.580 1.663 1.062 "O4'" 4TA 46 4TA C2 C2 C 0 1 N N N 99.465 91.404 -11.552 -7.185 3.103 -0.809 C2 4TA 47 4TA O2 O2 O 0 1 N N N 100.535 92.005 -11.355 -7.730 2.075 -0.457 O2 4TA 48 4TA N3 N3 N 0 1 N N N 98.673 91.122 -10.500 -7.513 3.659 -1.990 N3 4TA 49 4TA C4 C4 C 0 1 N N N 97.512 90.473 -10.691 -6.920 4.801 -2.392 C4 4TA 50 4TA O4 O4 O 0 1 N N N 96.796 90.208 -9.717 -7.220 5.306 -3.459 O4 4TA 51 4TA H5M1 1H5M H 0 0 N N N 96.051 88.407 -12.860 -4.362 6.440 -2.557 H5M1 4TA 52 4TA H5M2 2H5M H 0 0 N N N 95.145 89.088 -11.452 -5.940 7.261 -2.618 H5M2 4TA 53 4TA H5M3 3H5M H 0 0 N N N 95.232 89.917 -13.055 -4.994 7.262 -1.110 H5M3 4TA 54 4TA H6 H6 H 0 1 N N N 97.691 90.124 -14.149 -4.894 5.276 0.262 H6 4TA 55 4TA H1B H1* H 0 1 N N N 100.668 92.189 -13.597 -5.092 3.571 1.733 H1B 4TA 56 4TA "H2'1" 1H2* H 0 0 N N N 100.463 89.236 -14.194 -6.922 3.630 3.114 "H2'1" 4TA 57 4TA "H2'2" 2H2* H 0 0 N N N 101.826 90.152 -13.983 -8.009 3.508 1.695 "H2'2" 4TA 58 4TA H3B H3* H 0 1 N N N 100.822 89.522 -16.526 -8.192 1.174 1.892 H3B 4TA 59 4TA H1 H1 H 0 1 N N N 102.164 91.265 -17.264 -8.557 1.882 4.178 H1 4TA 60 4TA H4B H4* H 0 1 N N N 100.173 92.326 -16.881 -5.353 1.066 3.057 H4B 4TA 61 4TA "H5'1" 1H5* H 0 0 N N N 98.702 91.284 -18.242 -6.734 -1.046 2.707 "H5'1" 4TA 62 4TA "H5'2" 2H5* H 0 0 N N N 97.684 91.058 -16.914 -6.782 -0.655 0.971 "H5'2" 4TA 63 4TA H5B "1H5'" H 0 1 N N N 101.009 84.005 -23.284 5.191 -1.211 -2.379 H5B 4TA 64 4TA H5D "2H5'" H 0 1 N N N 100.825 85.680 -23.371 3.916 -0.468 -3.375 H5D 4TA 65 4TA "H4'" "H4'" H 0 1 N N N 102.621 85.286 -24.845 3.702 1.353 -1.645 "H4'" 4TA 66 4TA "H1'" "H1'" H 0 1 N N N 102.125 83.223 -27.836 5.702 2.603 -0.060 "H1'" 4TA 67 4TA "H2'" "H2'" H 0 1 N N N 99.453 84.413 -27.183 7.603 1.041 -1.897 "H2'" 4TA 68 4TA H2 H2 H 0 1 N N N 100.145 85.894 -28.814 7.748 3.229 -2.843 H2 4TA 69 4TA "H3'" "H3'" H 0 1 N N N 100.339 86.388 -26.029 5.901 0.893 -3.510 "H3'" 4TA 70 4TA H3 H3 H 0 1 N N N 101.792 86.904 -27.702 5.626 3.259 -3.700 H3 4TA 71 4TA H8A H8A H 0 1 N N N 98.579 82.638 -26.128 7.161 -0.842 0.640 H8A 4TA 72 4TA H2A H2A H 0 1 N N N 103.398 79.297 -29.019 9.031 5.182 2.253 H2A 4TA 73 4TA H6A1 1H6A H 0 0 N N N 98.479 78.103 -28.284 10.552 0.388 3.856 H6A1 4TA 74 4TA H6A2 2H6A H 0 0 N N N 99.550 76.844 -28.189 11.202 1.822 4.443 H6A2 4TA 75 4TA HN3 HN3 H 0 1 N N N 98.952 91.400 -9.559 -8.180 3.237 -2.553 HN3 4TA 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4TA C5M C5 SING N N 1 4TA C5M H5M1 SING N N 2 4TA C5M H5M2 SING N N 3 4TA C5M H5M3 SING N N 4 4TA C5 C6 DOUB N N 5 4TA C5 C4 SING N N 6 4TA C6 N1 SING N N 7 4TA C6 H6 SING N N 8 4TA N1 C1B SING N N 9 4TA N1 C2 SING N N 10 4TA C1B C2B SING N N 11 4TA C1B "O4'" SING N N 12 4TA C1B H1B SING N N 13 4TA C2B C3B SING N N 14 4TA C2B "H2'1" SING N N 15 4TA C2B "H2'2" SING N N 16 4TA C3B O3B SING N N 17 4TA C3B C4B SING N N 18 4TA C3B H3B SING N N 19 4TA O3B H1 SING N N 20 4TA C4B C5B SING N N 21 4TA C4B "O4'" SING N N 22 4TA C4B H4B SING N N 23 4TA C5B "O5'" SING N N 24 4TA C5B "H5'1" SING N N 25 4TA C5B "H5'2" SING N N 26 4TA "O5'" PD SING N N 27 4TA PD O2D SING N N 28 4TA PD O1D DOUB N N 29 4TA PD OCD SING N N 30 4TA OCD PC SING N N 31 4TA PC O1C SING N N 32 4TA PC O2C DOUB N N 33 4TA PC OBC SING N N 34 4TA OBC PB SING N N 35 4TA PB O2B SING N N 36 4TA PB O1B DOUB N N 37 4TA PB OAB SING N N 38 4TA OAB PA SING N N 39 4TA PA O1A SING N N 40 4TA PA O2A DOUB N N 41 4TA PA OA SING N N 42 4TA OA "C5'" SING N N 43 4TA "C5'" "C4'" SING N N 44 4TA "C5'" H5B SING N N 45 4TA "C5'" H5D SING N N 46 4TA "C4'" "O1'" SING N N 47 4TA "C4'" "C3'" SING N N 48 4TA "C4'" "H4'" SING N N 49 4TA "O1'" "C1'" SING N N 50 4TA "C1'" "C2'" SING N N 51 4TA "C1'" N9A SING N N 52 4TA "C1'" "H1'" SING N N 53 4TA "C2'" "O2'" SING N N 54 4TA "C2'" "C3'" SING N N 55 4TA "C2'" "H2'" SING N N 56 4TA "O2'" H2 SING N N 57 4TA "C3'" "O3'" SING N N 58 4TA "C3'" "H3'" SING N N 59 4TA "O3'" H3 SING N N 60 4TA N9A C8A SING Y N 61 4TA N9A C4A SING Y N 62 4TA C8A N7A DOUB Y N 63 4TA C8A H8A SING N N 64 4TA N7A C5A SING Y N 65 4TA C5A C4A DOUB Y N 66 4TA C5A C6A SING Y N 67 4TA C4A N3A SING Y N 68 4TA N3A C2A DOUB Y N 69 4TA C2A N1A SING Y N 70 4TA C2A H2A SING N N 71 4TA N1A C6A DOUB Y N 72 4TA C6A N6A SING N N 73 4TA N6A H6A1 SING N N 74 4TA N6A H6A2 SING N N 75 4TA C2 O2 DOUB N N 76 4TA C2 N3 SING N N 77 4TA N3 C4 SING N N 78 4TA N3 HN3 SING N N 79 4TA C4 O4 DOUB N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4TA InChI InChI 1.03 ;InChI=1S/C20H29N7O20P4/c1-8-3-26(20(32)25-18(8)31)12-2-9(28)10(43-12)4-41-48(33,34)45-50(37,38)47-51(39,40)46-49(35,36)42-5-11-14(29)15(30)19(44-11)27-7-24-13-16(21)22-6-23-17(13)27/h3,6-7,9-12,14-15,19,28-30H,2,4-5H2,1H3,(H,33,34)(H,35,36)(H,37,38)(H,39,40)(H2,21,22,23)(H,25,31,32)/p-4/t9-,10+,11+,12+,14+,15+,19+/m0/s1 ; 4TA InChIKey InChI 1.03 WLGHSSFVEUABFP-SLFMBYJQSA-J 4TA SMILES_CANONICAL CACTVS 3.385 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)O2)C(=O)NC1=O" 4TA SMILES CACTVS 3.385 "CC1=CN([CH]2C[CH](O)[CH](CO[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)O[P]([O-])(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)O2)C(=O)NC1=O" 4TA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O" 4TA SMILES "OpenEye OEToolkits" 1.7.5 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4TA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanidyl-phosphoryl]oxy-oxidanidyl-phosphoryl] phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4TA "Create component" 2003-05-20 RCSB 4TA "Modify descriptor" 2011-06-04 RCSB 4TA "Modify descriptor" 2011-06-07 RCSB 4TA "Modify identifier" 2011-06-07 RCSB 4TA "Modify descriptor" 2012-01-05 RCSB 4TA "Modify coordinates" 2012-01-05 RCSB #