data_4TC # _chem_comp.id 4TC _chem_comp.name ;P1-(5'-ADENOSINE)P4-(5'-URIDINE)-BETA,GAMMA-METHYLENE TETRAPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 N7 O20 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-09-01 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 811.374 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4TC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4TC O1G O1G O 0 1 N N N 53.964 61.413 43.397 0.564 -5.078 -4.254 O1G 4TC 1 4TC PG PG P 0 1 N N S 53.546 60.008 43.822 -0.278 -3.855 -3.617 PG 4TC 2 4TC O3G O3G O 0 1 N N N 52.333 59.819 44.723 -1.191 -3.150 -4.576 O3G 4TC 3 4TC O3P O3P O 0 1 N N N 54.901 59.444 44.560 0.851 -2.926 -2.935 O3P 4TC 4 4TC P P P 0 1 N N S 56.029 58.425 44.021 1.968 -1.958 -3.588 P 4TC 5 4TC O5U O5U O 0 1 N N N 57.411 58.877 44.786 2.869 -1.503 -2.324 O5U 4TC 6 4TC C5U C5U C 0 1 N N N 58.431 59.646 44.159 3.413 -2.511 -1.490 C5U 4TC 7 4TC C4U C4U C 0 1 N N R 59.593 58.792 43.633 4.218 -1.853 -0.377 C4U 4TC 8 4TC O4U O4U O 0 1 N N N 60.468 58.568 44.737 3.317 -1.047 0.414 O4U 4TC 9 4TC C1U C1U C 0 1 N N R 61.038 57.262 44.669 3.127 -1.671 1.694 C1U 4TC 10 4TC N1V N1V N 0 1 Y N N 60.677 56.523 45.889 1.724 -1.697 1.997 N1V 4TC 11 4TC C2V C2V C 0 1 Y N N 61.564 55.471 46.268 1.258 -1.599 3.329 C2V 4TC 12 4TC O2V O2V O 0 1 N N N 62.573 55.189 45.558 1.999 -1.486 4.307 O2V 4TC 13 4TC N3V N3V N 0 1 Y N N 61.313 54.750 47.384 -0.135 -1.638 3.477 N3V 4TC 14 4TC C4V C4V C 0 1 Y N N 60.263 55.037 48.175 -1.074 -1.761 2.465 C4V 4TC 15 4TC O4V O4V O 0 1 N N N 60.112 54.303 49.312 -2.288 -1.791 2.643 O4V 4TC 16 4TC C5V C5V C 0 1 Y N N 59.382 56.057 47.821 -0.505 -1.858 1.105 C5V 4TC 17 4TC C6V C6V C 0 1 Y N N 59.593 56.799 46.639 0.819 -1.821 0.949 C6V 4TC 18 4TC C2U C2U C 0 1 N N R 60.580 56.628 43.367 3.723 -3.064 1.589 C2U 4TC 19 4TC O2U O2U O 0 1 N N N 61.576 56.804 42.319 4.199 -3.547 2.829 O2U 4TC 20 4TC C3U C3U C 0 1 N N S 59.311 57.388 43.084 4.839 -2.853 0.588 C3U 4TC 21 4TC O3U O3U O 0 1 N N N 59.042 57.288 41.696 5.955 -2.223 1.216 O3U 4TC 22 4TC O2P O2P O 0 1 N N N 56.234 58.481 42.517 1.421 -0.844 -4.432 O2P 4TC 23 4TC O1P O1P O 0 1 N N N 55.587 57.041 44.476 2.931 -2.993 -4.373 O1P 4TC 24 4TC C3B C3B C 0 1 N N N 52.911 59.491 42.239 -1.112 -4.611 -2.205 C3B 4TC 25 4TC PB PB P 0 1 N N S 52.528 57.766 42.169 -0.313 -5.615 -0.935 PB 4TC 26 4TC O1B O1B O 0 1 N N N 53.194 57.136 43.359 0.701 -4.883 -0.106 O1B 4TC 27 4TC O2B O2B O 0 1 N N N 52.964 57.341 40.781 0.255 -6.889 -1.751 O2B 4TC 28 4TC O3A O3A O 0 1 N N N 50.906 57.544 42.374 -1.539 -6.276 -0.121 O3A 4TC 29 4TC PA PA P 0 1 N N R 49.740 58.329 41.532 -1.563 -7.283 1.142 PA 4TC 30 4TC O2A O2A O 0 1 N N N 48.585 58.659 42.434 -0.882 -8.600 0.909 O2A 4TC 31 4TC O1A O1A O 0 1 N N N 50.487 59.504 40.919 -0.927 -6.388 2.330 O1A 4TC 32 4TC "O5'" O5* O 0 1 N N N 49.287 57.265 40.422 -3.135 -7.363 1.514 "O5'" 4TC 33 4TC "C5'" C5* C 0 1 N N N 47.967 57.467 39.923 -3.838 -6.154 1.746 "C5'" 4TC 34 4TC "C4'" C4* C 0 1 N N R 47.899 57.227 38.440 -5.288 -6.479 2.076 "C4'" 4TC 35 4TC "C3'" C3* C 0 1 N N S 46.669 57.892 37.830 -6.128 -5.237 2.354 "C3'" 4TC 36 4TC "O3'" O3* O 0 1 N N N 46.903 59.224 37.343 -7.493 -5.528 2.057 "O3'" 4TC 37 4TC "C2'" C2* C 0 1 N N R 46.241 56.945 36.724 -5.962 -5.064 3.851 "C2'" 4TC 38 4TC "O2'" O2* O 0 1 N N N 46.257 57.536 35.400 -7.007 -4.317 4.441 "O2'" 4TC 39 4TC "C1'" C1* C 0 1 N N R 47.199 55.755 36.840 -5.961 -6.510 4.324 "C1'" 4TC 40 4TC "O4'" O4* O 0 1 N N N 47.753 55.832 38.153 -5.314 -7.271 3.286 "O4'" 4TC 41 4TC N9 N9 N 0 1 Y N N 46.550 54.455 36.501 -5.269 -6.720 5.594 N9 4TC 42 4TC C8 C8 C 0 1 Y N N 47.142 53.509 35.784 -3.925 -6.939 5.755 C8 4TC 43 4TC N7 N7 N 0 1 Y N N 46.300 52.473 35.627 -3.595 -7.095 7.020 N7 4TC 44 4TC C5 C5 C 0 1 Y N N 45.134 52.791 36.227 -4.775 -6.972 7.710 C5 4TC 45 4TC C6 C6 C 0 1 Y N N 43.935 52.118 36.378 -5.080 -7.037 9.066 C6 4TC 46 4TC N6 N6 N 0 1 N N N 43.801 50.897 35.831 -4.073 -7.271 10.018 N6 4TC 47 4TC N1 N1 N 0 1 Y N N 42.926 52.686 37.058 -6.366 -6.873 9.460 N1 4TC 48 4TC C2 C2 C 0 1 Y N N 43.083 53.890 37.592 -7.292 -6.651 8.497 C2 4TC 49 4TC N3 N3 N 0 1 Y N N 44.223 54.572 37.464 -7.120 -6.567 7.159 N3 4TC 50 4TC C4 C4 C 0 1 Y N N 45.277 54.044 36.776 -5.829 -6.738 6.841 C4 4TC 51 4TC H3B1 1H3B H 0 0 N N N 53.611 59.775 41.419 -1.615 -3.793 -1.677 H3B1 4TC 52 4TC H3B2 2H3B H 0 0 N N N 52.027 60.105 41.947 -1.906 -5.238 -2.626 H3B2 4TC 53 4TC H5U1 1H5U H 0 0 N N N 58.803 60.445 44.842 2.593 -3.103 -1.073 H5U1 4TC 54 4TC H5U2 2H5U H 0 0 N N N 58.007 60.282 43.347 4.053 -3.161 -2.094 H5U2 4TC 55 4TC H4U H4U H 0 1 N N N 60.141 59.375 42.856 4.964 -1.183 -0.816 H4U 4TC 56 4TC H3U H3U H 0 1 N N N 58.471 56.930 43.657 5.195 -3.774 0.119 H3U 4TC 57 4TC H1U H1U H 0 1 N N N 62.148 57.365 44.637 3.615 -1.061 2.461 H1U 4TC 58 4TC H2U H2U H 0 1 N N N 60.360 55.545 43.517 2.991 -3.778 1.193 H2U 4TC 59 4TC H6V H6V H 0 1 N N N 58.885 57.588 46.336 1.258 -1.891 -0.041 H6V 4TC 60 4TC H3V H3V H 0 1 N N N 61.930 53.976 47.630 -0.494 -1.569 4.425 H3V 4TC 61 4TC H5V H5V H 0 1 N N N 58.517 56.285 48.466 -1.180 -1.956 0.264 H5V 4TC 62 4TC HA HA H 0 1 N N N 62.376 56.325 42.498 3.460 -3.493 3.461 HA 4TC 63 4TC HB HB H 0 1 N N N 58.867 56.418 41.356 6.488 -1.836 0.505 HB 4TC 64 4TC "H5'1" 1H5* H 0 0 N N N 47.578 58.477 40.192 -3.364 -5.626 2.579 "H5'1" 4TC 65 4TC "H5'2" 2H5* H 0 0 N N N 47.223 56.845 40.472 -3.778 -5.534 0.847 "H5'2" 4TC 66 4TC "H4'" H4* H 0 1 N N N 48.821 57.619 37.951 -5.714 -7.090 1.273 "H4'" 4TC 67 4TC "H3'" H3* H 0 1 N N N 45.864 57.929 38.600 -5.841 -4.356 1.773 "H3'" 4TC 68 4TC HC HC H 0 1 N N N 46.137 59.638 36.963 -7.490 -6.055 1.244 HC 4TC 69 4TC "H2'" H2* H 0 1 N N N 45.207 56.590 36.942 -5.007 -4.575 4.075 "H2'" 4TC 70 4TC HD HD H 0 1 N N N 45.989 56.943 34.708 -7.687 -4.951 4.731 HD 4TC 71 4TC "H1'" H1* H 0 1 N N N 48.029 55.918 36.113 -6.972 -6.904 4.477 "H1'" 4TC 72 4TC H8 H8 H 0 1 N N N 48.167 53.564 35.379 -3.242 -6.974 4.917 H8 4TC 73 4TC H6N1 1H6N H 0 0 N N N 42.917 50.401 35.942 -3.319 -6.617 10.108 H6N1 4TC 74 4TC H6N2 2H6N H 0 0 N N N 44.567 50.465 35.314 -4.069 -8.133 10.529 H6N2 4TC 75 4TC H2 H2 H 0 1 N N N 42.249 54.340 38.157 -8.311 -6.525 8.848 H2 4TC 76 4TC H1P H1P H 0 1 N N N 55.495 56.473 43.720 3.647 -2.638 -4.940 H1P 4TC 77 4TC H1A H1A H 0 1 N N N 50.643 60.163 41.585 -0.749 -6.808 3.198 H1A 4TC 78 4TC H2B H2B H 0 1 N N N 52.201 57.252 40.222 1.189 -7.158 -1.621 H2B 4TC 79 4TC H1G H1G H 0 1 N N N 54.051 61.964 44.166 1.085 -4.921 -5.070 H1G 4TC 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4TC O1G PG SING N N 1 4TC O1G H1G SING N N 2 4TC PG O3G DOUB N N 3 4TC PG O3P SING N N 4 4TC PG C3B SING N N 5 4TC O3P P SING N N 6 4TC P O5U SING N N 7 4TC P O2P DOUB N N 8 4TC P O1P SING N N 9 4TC O5U C5U SING N N 10 4TC C5U C4U SING N N 11 4TC C5U H5U1 SING N N 12 4TC C5U H5U2 SING N N 13 4TC C4U O4U SING N N 14 4TC C4U C3U SING N N 15 4TC C4U H4U SING N N 16 4TC O4U C1U SING N N 17 4TC C1U N1V SING N N 18 4TC C1U C2U SING N N 19 4TC C1U H1U SING N N 20 4TC N1V C2V SING Y N 21 4TC N1V C6V SING Y N 22 4TC C2V O2V DOUB N N 23 4TC C2V N3V SING Y N 24 4TC N3V C4V SING Y N 25 4TC N3V H3V SING N N 26 4TC C4V O4V DOUB N N 27 4TC C4V C5V SING Y N 28 4TC C5V C6V DOUB Y N 29 4TC C5V H5V SING N N 30 4TC C6V H6V SING N N 31 4TC C2U O2U SING N N 32 4TC C2U C3U SING N N 33 4TC C2U H2U SING N N 34 4TC O2U HA SING N N 35 4TC C3U O3U SING N N 36 4TC C3U H3U SING N N 37 4TC O3U HB SING N N 38 4TC O1P H1P SING N N 39 4TC C3B PB SING N N 40 4TC C3B H3B1 SING N N 41 4TC C3B H3B2 SING N N 42 4TC PB O1B DOUB N N 43 4TC PB O2B SING N N 44 4TC PB O3A SING N N 45 4TC O2B H2B SING N N 46 4TC O3A PA SING N N 47 4TC PA O2A DOUB N N 48 4TC PA O1A SING N N 49 4TC PA "O5'" SING N N 50 4TC O1A H1A SING N N 51 4TC "O5'" "C5'" SING N N 52 4TC "C5'" "C4'" SING N N 53 4TC "C5'" "H5'1" SING N N 54 4TC "C5'" "H5'2" SING N N 55 4TC "C4'" "C3'" SING N N 56 4TC "C4'" "O4'" SING N N 57 4TC "C4'" "H4'" SING N N 58 4TC "C3'" "O3'" SING N N 59 4TC "C3'" "C2'" SING N N 60 4TC "C3'" "H3'" SING N N 61 4TC "O3'" HC SING N N 62 4TC "C2'" "O2'" SING N N 63 4TC "C2'" "C1'" SING N N 64 4TC "C2'" "H2'" SING N N 65 4TC "O2'" HD SING N N 66 4TC "C1'" "O4'" SING N N 67 4TC "C1'" N9 SING N N 68 4TC "C1'" "H1'" SING N N 69 4TC N9 C8 SING Y N 70 4TC N9 C4 SING Y N 71 4TC C8 N7 DOUB Y N 72 4TC C8 H8 SING N N 73 4TC N7 C5 SING Y N 74 4TC C5 C6 SING Y N 75 4TC C5 C4 DOUB Y N 76 4TC C6 N6 SING N N 77 4TC C6 N1 DOUB Y N 78 4TC N6 H6N1 SING N N 79 4TC N6 H6N2 SING N N 80 4TC N1 C2 SING Y N 81 4TC C2 N3 DOUB Y N 82 4TC C2 H2 SING N N 83 4TC N3 C4 SING Y N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4TC SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)C[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)N5C=CC(=O)NC5=O)[C@@H](O)[C@H]3O" 4TC SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)N5C=CC(=O)NC5=O)[CH](O)[CH]3O" 4TC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(C[P@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CC(=O)NC5=O)O)O)O)O)O)N" 4TC SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(CP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CC(=O)NC5=O)O)O)O)O)O)N" 4TC InChI InChI 1.03 ;InChI=1S/C20H29N7O20P4/c21-16-11-17(23-5-22-16)27(6-24-11)19-15(32)13(30)9(45-19)4-43-51(40,41)47-49(36,37)7-48(34,35)46-50(38,39)42-3-8-12(29)14(31)18(44-8)26-2-1-10(28)25-20(26)33/h1-2,5-6,8-9,12-15,18-19,29-32H,3-4,7H2,(H,34,35)(H,36,37)(H,38,39)(H,40,41)(H2,21,22,23)(H,25,28,33)/t8-,9-,12-,13-,14-,15-,18-,19-/m1/s1 ; 4TC InChIKey InChI 1.03 CDWUJMZPKJSQNK-LKAJGUBRSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4TC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]methyl-[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4TC "Create component" 2006-09-01 RCSB 4TC "Modify descriptor" 2011-06-04 RCSB #