data_4UO # _chem_comp.id 4UO _chem_comp.name "2,3-dihydroxanthosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Xanthosine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-06-01 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 284.225 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4UO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5BQP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4UO O6 O1 O 0 1 N N N -22.125 28.655 17.776 4.462 -1.829 -0.491 O6 4UO 1 4UO C6 C1 C 0 1 N N N -23.010 29.308 18.646 3.685 -0.940 -0.193 C6 4UO 2 4UO N1 N1 N 0 1 N N N -23.242 28.768 19.817 4.136 0.290 0.134 N1 4UO 3 4UO C2 C2 C 0 1 N N N -24.098 29.291 20.686 3.282 1.274 0.462 C2 4UO 4 4UO O2 O2 O 0 1 N N N -24.238 28.620 21.883 3.729 2.367 0.750 O2 4UO 5 4UO N3 N2 N 0 1 N N N -24.786 30.389 20.441 1.950 1.091 0.483 N3 4UO 6 4UO C4 C3 C 0 1 Y N N -24.594 31.021 19.255 1.401 -0.130 0.165 C4 4UO 7 4UO C5 C4 C 0 1 Y N N -23.706 30.502 18.298 2.241 -1.179 -0.188 C5 4UO 8 4UO N7 N3 N 0 1 Y N N -23.735 31.325 17.213 1.459 -2.251 -0.458 N7 4UO 9 4UO C8 C5 C 0 1 Y N N -24.611 32.307 17.504 0.210 -1.918 -0.298 C8 4UO 10 4UO N9 N4 N 0 1 Y N N -25.143 32.157 18.701 0.133 -0.614 0.096 N9 4UO 11 4UO "C1'" C6 C 0 1 N N R -26.075 33.113 19.339 -1.095 0.133 0.380 "C1'" 4UO 12 4UO "O4'" O3 O 0 1 N N N -25.353 33.820 20.343 -2.194 -0.771 0.625 "O4'" 4UO 13 4UO "C4'" C7 C 0 1 N N R -26.107 33.820 21.582 -3.405 -0.032 0.389 "C4'" 4UO 14 4UO "C5'" C8 C 0 1 N N N -25.181 33.898 22.779 -4.473 -0.957 -0.199 "C5'" 4UO 15 4UO "O5'" O4 O 0 1 N N N -24.160 34.876 22.614 -4.848 -1.931 0.777 "O5'" 4UO 16 4UO "C3'" C9 C 0 1 N N S -26.939 32.554 21.494 -3.070 1.087 -0.615 "C3'" 4UO 17 4UO "O3'" O5 O 0 1 N N N -28.057 32.577 22.367 -3.351 2.369 -0.048 "O3'" 4UO 18 4UO "C2'" C10 C 0 1 N N R -27.297 32.467 20.002 -1.552 0.928 -0.869 "C2'" 4UO 19 4UO "O2'" O6 O 0 1 N N N -28.423 33.279 19.711 -0.908 2.202 -0.927 "O2'" 4UO 20 4UO H1 H1 H 0 1 N N N -22.756 27.930 20.065 5.090 0.466 0.132 H1 4UO 21 4UO H2 H2 H 0 1 N N N -25.434 30.748 21.113 1.369 1.829 0.727 H2 4UO 22 4UO H3 H3 H 0 1 N N N -24.849 33.121 16.835 -0.634 -2.576 -0.444 H3 4UO 23 4UO H4 H4 H 0 1 N N N -26.434 33.820 18.577 -0.949 0.802 1.228 H4 4UO 24 4UO H5 H5 H 0 1 N N N -26.784 34.687 21.602 -3.763 0.400 1.324 H5 4UO 25 4UO H6 H6 H 0 1 N N N -25.775 34.154 23.669 -5.346 -0.370 -0.481 H6 4UO 26 4UO H7 H7 H 0 1 N N N -24.708 32.915 22.924 -4.073 -1.460 -1.079 H7 4UO 27 4UO H8 H8 H 0 1 N N N -23.606 34.889 23.386 -5.523 -2.553 0.472 H8 4UO 28 4UO H9 H9 H 0 1 N N N -26.294 31.698 21.741 -3.631 0.950 -1.540 H9 4UO 29 4UO H10 H10 H 0 1 N N N -27.756 32.631 23.266 -4.280 2.501 0.185 H10 4UO 30 4UO H11 H11 H 0 1 N N N -27.422 31.422 19.681 -1.368 0.359 -1.781 H11 4UO 31 4UO H12 H12 H 0 1 N N N -29.198 32.902 20.111 -1.161 2.737 -1.691 H12 4UO 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4UO N7 C8 DOUB Y N 1 4UO N7 C5 SING Y N 2 4UO C8 N9 SING Y N 3 4UO O6 C6 DOUB N N 4 4UO C5 C6 SING N N 5 4UO C5 C4 DOUB Y N 6 4UO C6 N1 SING N N 7 4UO N9 C4 SING Y N 8 4UO N9 "C1'" SING N N 9 4UO C4 N3 SING N N 10 4UO "C1'" "C2'" SING N N 11 4UO "C1'" "O4'" SING N N 12 4UO "O2'" "C2'" SING N N 13 4UO N1 C2 SING N N 14 4UO "C2'" "C3'" SING N N 15 4UO "O4'" "C4'" SING N N 16 4UO N3 C2 SING N N 17 4UO C2 O2 DOUB N N 18 4UO "C3'" "C4'" SING N N 19 4UO "C3'" "O3'" SING N N 20 4UO "C4'" "C5'" SING N N 21 4UO "O5'" "C5'" SING N N 22 4UO N1 H1 SING N N 23 4UO N3 H2 SING N N 24 4UO C8 H3 SING N N 25 4UO "C1'" H4 SING N N 26 4UO "C4'" H5 SING N N 27 4UO "C5'" H6 SING N N 28 4UO "C5'" H7 SING N N 29 4UO "O5'" H8 SING N N 30 4UO "C3'" H9 SING N N 31 4UO "O3'" H10 SING N N 32 4UO "C2'" H11 SING N N 33 4UO "O2'" H12 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4UO SMILES ACDLabs 12.01 "O=C1NC(=O)Nc2c1ncn2C3C(C(C(O3)CO)O)O" 4UO InChI InChI 1.03 "InChI=1S/C10H12N4O6/c15-1-3-5(16)6(17)9(20-3)14-2-11-4-7(14)12-10(19)13-8(4)18/h2-3,5-6,9,15-17H,1H2,(H2,12,13,18,19)/t3-,5-,6-,9-/m1/s1" 4UO InChIKey InChI 1.03 UBORTCNDUKBEOP-UUOKFMHZSA-N 4UO SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3C(=O)NC(=O)Nc23" 4UO SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3C(=O)NC(=O)Nc23" 4UO SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)NC(=O)NC2=O" 4UO SMILES "OpenEye OEToolkits" 1.9.2 "c1nc2c(n1C3C(C(C(O3)CO)O)O)NC(=O)NC2=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4UO "SYSTEMATIC NAME" ACDLabs 12.01 "2,3-dihydroxanthosine" 4UO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "9-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-3H-purine-2,6-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4UO "Create component" 2015-06-01 EBI 4UO "Initial release" 2015-07-01 RCSB 4UO "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 4UO _pdbx_chem_comp_synonyms.name Xanthosine _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##