data_4VH # _chem_comp.id 4VH _chem_comp.name "N-[2-[4-[(2S)-3-(2-hydroxyethylamino)-3-oxidanylidene-2-(2-phenoxyethanoylamino)propyl]-1,2,3-triazol-1-yl]ethyl]-4-[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H38 N6 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-08-06 _chem_comp.pdbx_modified_date 2022-02-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 674.722 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4VH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FIO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4VH O5 O5 O 0 1 N N N 23.095 18.128 44.585 -8.894 0.455 0.376 O5 4VH 1 4VH C5 C5 C 0 1 N N R 24.191 18.184 43.639 -9.801 1.316 -0.315 C5 4VH 2 4VH C4 C4 C 0 1 N N R 24.826 16.789 43.421 -11.228 0.784 -0.158 C4 4VH 3 4VH C3 C3 C 0 1 N N S 25.118 16.186 44.754 -11.292 -0.650 -0.694 C3 4VH 4 4VH C2 C2 C 0 1 N N R 23.883 16.177 45.654 -10.266 -1.508 0.052 C2 4VH 5 4VH C1 C1 C 0 1 N N S 23.462 17.598 45.834 -8.876 -0.888 -0.114 C1 4VH 6 4VH C6 C6 C 0 1 N N N 23.619 18.811 42.386 -9.714 2.726 0.273 C6 4VH 7 4VH O4 O4 O 0 1 N N N 24.177 15.673 42.731 -11.591 0.794 1.224 O4 4VH 8 4VH O3 O3 O 0 1 N N N 25.534 14.854 44.601 -12.602 -1.180 -0.484 O3 4VH 9 4VH O6 O6 O 0 1 N N N 23.265 20.152 42.485 -8.415 3.267 0.023 O6 4VH 10 4VH S1 S1 S 0 1 N N N 22.038 17.649 46.936 -7.665 -1.858 0.825 S1 4VH 11 4VH O2 O2 O 0 1 N N N 24.264 15.524 46.872 -10.266 -2.831 -0.490 O2 4VH 12 4VH C7 C7 C 0 1 Y N N 21.821 19.383 47.114 -6.133 -1.096 0.402 C7 4VH 13 4VH C8 C8 C 0 1 Y N N 22.602 20.435 46.648 -6.115 -0.009 -0.469 C8 4VH 14 4VH C9 C9 C 0 1 Y N N 22.207 21.756 46.843 -4.925 0.586 -0.799 C9 4VH 15 4VH C10 C10 C 0 1 Y N N 21.048 22.051 47.565 -3.729 0.101 -0.262 C10 4VH 16 4VH C11 C11 C 0 1 Y N N 20.279 20.990 48.031 -3.750 -0.991 0.611 C11 4VH 17 4VH C12 C12 C 0 1 Y N N 20.659 19.678 47.824 -4.944 -1.579 0.943 C12 4VH 18 4VH C13 C13 C 0 1 N N N 20.541 23.450 47.815 -2.447 0.739 -0.616 C13 4VH 19 4VH O13 O13 O 0 1 N N N 21.316 24.368 48.077 -2.430 1.688 -1.376 O13 4VH 20 4VH N1 N1 N 0 1 N N N 19.229 23.665 47.600 -1.295 0.269 -0.097 N1 4VH 21 4VH C14 C14 C 0 1 N N N 18.743 24.935 47.113 -0.022 0.903 -0.449 C14 4VH 22 4VH C15 C15 C 0 1 N N N 18.329 25.748 48.261 1.122 0.184 0.269 C15 4VH 23 4VH N2 N2 N 0 1 Y N N 17.391 24.958 49.039 2.395 0.817 -0.082 N2 4VH 24 4VH C16 C16 C 0 1 Y N N 16.071 24.808 48.820 3.306 1.305 0.791 C16 4VH 25 4VH C17 C17 C 0 1 Y N N 15.665 23.919 49.769 4.321 1.796 0.043 C17 4VH 26 4VH N3 N3 N 0 1 Y N N 16.750 23.515 50.481 3.986 1.587 -1.235 N3 4VH 27 4VH N4 N4 N 0 1 Y N N 17.818 24.139 50.020 2.842 1.000 -1.276 N4 4VH 28 4VH C18 C18 C 0 1 N N N 14.300 23.428 50.065 5.581 2.450 0.549 C18 4VH 29 4VH C19 C19 C 0 1 N N S 13.803 22.420 49.021 6.799 1.723 -0.025 C19 4VH 30 4VH N5 N5 N 0 1 N N N 13.329 23.055 47.797 6.839 0.353 0.491 N5 4VH 31 4VH C20 C20 C 0 1 N N N 12.732 21.548 49.642 8.055 2.450 0.382 C20 4VH 32 4VH N6 N6 N 0 1 N N N 13.175 20.601 50.470 8.239 3.734 0.016 N6 4VH 33 4VH O7 O7 O 0 1 N N N 11.542 21.735 49.389 8.900 1.880 1.038 O7 4VH 34 4VH C21 C21 C 0 1 N N N 12.493 19.326 50.646 9.460 4.441 0.411 C21 4VH 35 4VH C22 C22 C 0 1 N N N 13.168 18.233 49.860 9.418 5.872 -0.128 C22 4VH 36 4VH O8 O8 O 0 1 N N N 12.528 17.977 48.612 8.349 6.585 0.497 O8 4VH 37 4VH C23 C23 C 0 1 N N N 12.508 24.107 47.738 7.469 -0.612 -0.207 C23 4VH 38 4VH O9 O9 O 0 1 N N N 12.644 25.043 46.952 8.003 -0.346 -1.263 O9 4VH 39 4VH C24 C24 C 0 1 N N N 11.291 24.110 48.610 7.510 -2.022 0.324 C24 4VH 40 4VH O10 O10 O 0 1 N N N 10.189 24.682 47.905 8.229 -2.854 -0.589 O10 4VH 41 4VH C25 C25 C 0 1 Y N N 9.182 23.872 47.467 8.359 -4.165 -0.257 C25 4VH 42 4VH C26 C26 C 0 1 Y N N 8.163 24.493 46.759 7.801 -4.643 0.920 C26 4VH 43 4VH C27 C27 C 0 1 Y N N 7.115 23.724 46.287 7.929 -5.977 1.253 C27 4VH 44 4VH C28 C28 C 0 1 Y N N 7.089 22.369 46.524 8.614 -6.837 0.414 C28 4VH 45 4VH C29 C29 C 0 1 Y N N 8.108 21.759 47.228 9.172 -6.364 -0.759 C29 4VH 46 4VH C30 C30 C 0 1 Y N N 9.176 22.501 47.690 9.045 -5.030 -1.097 C30 4VH 47 4VH H1 H1 H 0 1 N N N 24.972 18.851 44.032 -9.539 1.346 -1.373 H1 4VH 48 4VH H2 H2 H 0 1 N N N 25.793 16.962 42.927 -11.916 1.415 -0.721 H2 4VH 49 4VH H3 H3 H 0 1 N N N 25.905 16.775 45.248 -11.063 -0.651 -1.759 H3 4VH 50 4VH H4 H4 H 0 1 N N N 23.079 15.616 45.155 -10.524 -1.547 1.110 H4 4VH 51 4VH H5 H5 H 0 1 N N N 24.261 18.183 46.313 -8.602 -0.886 -1.169 H5 4VH 52 4VH H6 H6 H 0 1 N N N 22.718 18.244 42.107 -10.468 3.361 -0.193 H6 4VH 53 4VH H7 H7 H 0 1 N N N 24.372 18.719 41.589 -9.889 2.683 1.347 H7 4VH 54 4VH H8 H8 H 0 1 N N N 24.761 14.923 42.722 -12.485 0.469 1.398 H8 4VH 55 4VH H9 H9 H 0 1 N N N 25.717 14.479 45.454 -12.715 -2.087 -0.800 H9 4VH 56 4VH H10 H10 H 0 1 N N N 22.919 20.451 41.652 -8.288 4.161 0.369 H10 4VH 57 4VH H11 H11 H 0 1 N N N 23.521 15.497 47.463 -9.638 -3.430 -0.064 H11 4VH 58 4VH H12 H12 H 0 1 N N N 23.526 20.225 46.129 -7.039 0.366 -0.884 H12 4VH 59 4VH H13 H13 H 0 1 N N N 22.801 22.559 46.433 -4.911 1.429 -1.474 H13 4VH 60 4VH H14 H14 H 0 1 N N N 19.364 21.196 48.567 -2.828 -1.368 1.028 H14 4VH 61 4VH H15 H15 H 0 1 N N N 20.051 18.876 48.215 -4.961 -2.419 1.621 H15 4VH 62 4VH H16 H16 H 0 1 N N N 18.577 22.929 47.782 -1.309 -0.488 0.509 H16 4VH 63 4VH H17 H17 H 0 1 N N N 19.543 25.451 46.562 0.130 0.840 -1.527 H17 4VH 64 4VH H18 H18 H 0 1 N N N 17.884 24.772 46.445 -0.041 1.950 -0.145 H18 4VH 65 4VH H19 H19 H 0 1 N N N 19.205 26.004 48.875 0.970 0.246 1.347 H19 4VH 66 4VH H20 H20 H 0 1 N N N 17.844 26.671 47.912 1.140 -0.863 -0.035 H20 4VH 67 4VH H21 H21 H 0 1 N N N 15.469 25.286 48.061 3.236 1.304 1.869 H21 4VH 68 4VH H22 H22 H 0 1 N N N 13.612 24.286 50.083 5.599 3.494 0.237 H22 4VH 69 4VH H23 H23 H 0 1 N N N 14.306 22.941 51.051 5.605 2.396 1.638 H23 4VH 70 4VH H24 H24 H 0 1 N N N 14.652 21.770 48.764 6.728 1.700 -1.112 H24 4VH 71 4VH H25 H25 H 0 1 N N N 13.645 22.671 46.929 6.411 0.140 1.336 H25 4VH 72 4VH H26 H26 H 0 1 N N N 14.010 20.773 50.992 7.563 4.191 -0.509 H26 4VH 73 4VH H27 H27 H 0 1 N N N 11.453 19.425 50.302 9.530 4.464 1.499 H27 4VH 74 4VH H28 H28 H 0 1 N N N 12.502 19.059 51.713 10.327 3.923 0.002 H28 4VH 75 4VH H29 H29 H 0 1 N N N 13.155 17.310 50.458 10.363 6.370 0.089 H29 4VH 76 4VH H30 H30 H 0 1 N N N 14.209 18.530 49.667 9.259 5.850 -1.206 H30 4VH 77 4VH H31 H31 H 0 1 N N N 12.989 17.283 48.156 8.263 7.502 0.202 H31 4VH 78 4VH H32 H32 H 0 1 N N N 11.044 23.077 48.896 8.008 -2.031 1.293 H32 4VH 79 4VH H33 H33 H 0 1 N N N 11.492 24.702 49.515 6.493 -2.398 0.435 H33 4VH 80 4VH H34 H34 H 0 1 N N N 8.188 25.558 46.580 7.266 -3.971 1.576 H34 4VH 81 4VH H35 H35 H 0 1 N N N 6.314 24.189 45.731 7.495 -6.350 2.169 H35 4VH 82 4VH H36 H36 H 0 1 N N N 6.264 21.777 46.156 8.714 -7.880 0.676 H36 4VH 83 4VH H37 H37 H 0 1 N N N 8.069 20.697 47.418 9.706 -7.037 -1.413 H37 4VH 84 4VH H38 H38 H 0 1 N N N 9.991 22.025 48.215 9.477 -4.662 -2.016 H38 4VH 85 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4VH C6 O6 SING N N 1 4VH C6 C5 SING N N 2 4VH O4 C4 SING N N 3 4VH C4 C5 SING N N 4 4VH C4 C3 SING N N 5 4VH C5 O5 SING N N 6 4VH O5 C1 SING N N 7 4VH O3 C3 SING N N 8 4VH C3 C2 SING N N 9 4VH C2 C1 SING N N 10 4VH C2 O2 SING N N 11 4VH C1 S1 SING N N 12 4VH C27 C28 DOUB Y N 13 4VH C27 C26 SING Y N 14 4VH C28 C29 SING Y N 15 4VH C8 C9 DOUB Y N 16 4VH C8 C7 SING Y N 17 4VH C26 C25 DOUB Y N 18 4VH C9 C10 SING Y N 19 4VH S1 C7 SING N N 20 4VH O9 C23 DOUB N N 21 4VH C14 N1 SING N N 22 4VH C14 C15 SING N N 23 4VH C7 C12 DOUB Y N 24 4VH C29 C30 DOUB Y N 25 4VH C25 C30 SING Y N 26 4VH C25 O10 SING N N 27 4VH C10 C13 SING N N 28 4VH C10 C11 DOUB Y N 29 4VH N1 C13 SING N N 30 4VH C23 N5 SING N N 31 4VH C23 C24 SING N N 32 4VH N5 C19 SING N N 33 4VH C13 O13 DOUB N N 34 4VH C12 C11 SING Y N 35 4VH O10 C24 SING N N 36 4VH C15 N2 SING N N 37 4VH O8 C22 SING N N 38 4VH C16 N2 SING Y N 39 4VH C16 C17 DOUB Y N 40 4VH C19 C20 SING N N 41 4VH C19 C18 SING N N 42 4VH N2 N4 SING Y N 43 4VH O7 C20 DOUB N N 44 4VH C20 N6 SING N N 45 4VH C17 C18 SING N N 46 4VH C17 N3 SING Y N 47 4VH C22 C21 SING N N 48 4VH N4 N3 DOUB Y N 49 4VH N6 C21 SING N N 50 4VH C5 H1 SING N N 51 4VH C4 H2 SING N N 52 4VH C3 H3 SING N N 53 4VH C2 H4 SING N N 54 4VH C1 H5 SING N N 55 4VH C6 H6 SING N N 56 4VH C6 H7 SING N N 57 4VH O4 H8 SING N N 58 4VH O3 H9 SING N N 59 4VH O6 H10 SING N N 60 4VH O2 H11 SING N N 61 4VH C8 H12 SING N N 62 4VH C9 H13 SING N N 63 4VH C11 H14 SING N N 64 4VH C12 H15 SING N N 65 4VH N1 H16 SING N N 66 4VH C14 H17 SING N N 67 4VH C14 H18 SING N N 68 4VH C15 H19 SING N N 69 4VH C15 H20 SING N N 70 4VH C16 H21 SING N N 71 4VH C18 H22 SING N N 72 4VH C18 H23 SING N N 73 4VH C19 H24 SING N N 74 4VH N5 H25 SING N N 75 4VH N6 H26 SING N N 76 4VH C21 H27 SING N N 77 4VH C21 H28 SING N N 78 4VH C22 H29 SING N N 79 4VH C22 H30 SING N N 80 4VH O8 H31 SING N N 81 4VH C24 H32 SING N N 82 4VH C24 H33 SING N N 83 4VH C26 H34 SING N N 84 4VH C27 H35 SING N N 85 4VH C28 H36 SING N N 86 4VH C29 H37 SING N N 87 4VH C30 H38 SING N N 88 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4VH InChI InChI 1.03 "InChI=1S/C30H38N6O10S/c37-13-11-32-29(44)22(33-24(39)17-45-20-4-2-1-3-5-20)14-19-15-36(35-34-19)12-10-31-28(43)18-6-8-21(9-7-18)47-30-27(42)26(41)25(40)23(16-38)46-30/h1-9,15,22-23,25-27,30,37-38,40-42H,10-14,16-17H2,(H,31,43)(H,32,44)(H,33,39)/t22-,23+,25-,26-,27+,30-/m0/s1" 4VH InChIKey InChI 1.03 ZWUTXWGBJCMJNB-VGSBVMQVSA-N 4VH SMILES_CANONICAL CACTVS 3.385 "OCCNC(=O)[C@H](Cc1cn(CCNC(=O)c2ccc(S[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)cc2)nn1)NC(=O)COc4ccccc4" 4VH SMILES CACTVS 3.385 "OCCNC(=O)[CH](Cc1cn(CCNC(=O)c2ccc(S[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)cc2)nn1)NC(=O)COc4ccccc4" 4VH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)OCC(=O)N[C@@H](Cc2cn(nn2)CCNC(=O)c3ccc(cc3)S[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)C(=O)NCCO" 4VH SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)OCC(=O)NC(Cc2cn(nn2)CCNC(=O)c3ccc(cc3)SC4C(C(C(C(O4)CO)O)O)O)C(=O)NCCO" # _pdbx_chem_comp_identifier.comp_id 4VH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[2-[4-[(2~{S})-3-(2-hydroxyethylamino)-3-oxidanylidene-2-(2-phenoxyethanoylamino)propyl]-1,2,3-triazol-1-yl]ethyl]-4-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]sulfanyl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4VH "Create component" 2021-08-06 PDBJ 4VH "Modify atom id" 2021-08-27 PDBJ 4VH "Initial release" 2022-02-16 RCSB 4VH "Other modification" 2022-02-15 PDBJ ##