data_4XI # _chem_comp.id 4XI _chem_comp.name "5-[[(2S)-2-(4-chlorophenyl)-1'-methyl-spiro[2H-indole-3,4'-piperidine]-1-yl]methyl]-N-oxidanyl-thiophene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 Cl N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-07 _chem_comp.pdbx_modified_date 2022-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.011 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4XI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7P2V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4XI C1 C1 C 0 1 Y N N -8.540 32.634 33.734 -4.684 0.663 0.556 C1 4XI 1 4XI C2 C2 C 0 1 Y N N -8.580 36.649 30.422 -1.175 -1.362 1.146 C2 4XI 2 4XI C3 C3 C 0 1 Y N N -8.986 37.420 29.348 -0.721 -2.593 1.578 C3 4XI 3 4XI C4 C4 C 0 1 Y N N -9.410 38.706 29.574 0.349 -3.198 0.943 C4 4XI 4 4XI C5 C5 C 0 1 Y N N -9.434 39.238 30.840 0.964 -2.569 -0.125 C5 4XI 5 4XI C6 C6 C 0 1 Y N N -9.027 38.458 31.906 0.509 -1.337 -0.557 C6 4XI 6 4XI C7 C7 C 0 1 N N N -5.672 36.317 32.222 -0.221 1.260 1.788 C7 4XI 7 4XI C8 C8 C 0 1 Y N N -5.477 36.212 30.743 1.166 1.560 1.281 C8 4XI 8 4XI C10 C9 C 0 1 Y N N -5.264 35.317 28.604 3.004 2.828 0.776 C10 4XI 9 4XI C11 C10 C 0 1 Y N N -5.077 36.665 28.344 3.470 1.614 0.358 C11 4XI 10 4XI C12 C11 C 0 1 Y N N -7.528 31.682 33.687 -5.206 1.061 1.774 C12 4XI 11 4XI C13 C12 C 0 1 N N N -4.780 37.364 27.065 4.792 1.366 -0.226 C13 4XI 12 4XI C14 C13 C 0 1 N N N -10.289 34.946 32.353 -2.794 -0.926 -1.386 C14 4XI 13 4XI C15 C14 C 0 1 N N N -9.724 35.435 34.719 -2.736 1.492 -2.052 C15 4XI 14 4XI C16 C15 C 0 1 N N N -11.199 35.757 34.587 -1.887 1.094 -3.263 C16 4XI 15 4XI C17 C16 C 0 1 N N N -11.333 34.015 32.940 -1.943 -1.243 -2.620 C17 4XI 16 4XI C19 C17 C 0 1 Y N N -6.245 32.031 33.290 -4.383 1.649 2.716 C19 4XI 17 4XI C21 C18 C 0 1 Y N N -6.952 34.268 32.977 -2.510 1.444 1.222 C21 4XI 18 4XI C22 C19 C 0 1 Y N N -8.243 33.935 33.374 -3.345 0.846 0.283 C22 4XI 19 4XI C23 C20 C 0 1 N N S -8.151 36.308 32.887 -1.061 0.606 -0.397 C23 4XI 20 4XI C25 C21 C 0 1 Y N N -8.599 37.155 31.712 -0.561 -0.734 0.078 C25 4XI 21 4XI C18 C22 C 0 1 N N N -13.355 34.924 33.899 -1.556 -0.629 -4.930 C18 4XI 22 4XI C20 C23 C 0 1 Y N N -5.931 33.330 32.929 -3.044 1.844 2.445 C20 4XI 23 4XI C24 C24 C 0 1 N N N -9.128 35.173 33.331 -2.504 0.496 -0.922 C24 4XI 24 4XI C9 C25 C 0 1 Y N N -5.493 35.074 29.973 1.727 2.775 1.284 C9 4XI 25 4XI N1 N1 N 0 1 N N N -6.876 35.629 32.666 -1.202 1.551 0.734 N1 4XI 26 4XI N2 N2 N 0 1 N N N -4.613 36.640 25.964 5.139 0.119 -0.601 N2 4XI 27 4XI N3 N3 N 0 1 N N N -11.946 34.581 34.142 -2.238 -0.269 -3.679 N3 4XI 28 4XI O1 O1 O 0 1 N N N -4.689 38.591 27.056 5.575 2.286 -0.371 O1 4XI 29 4XI O2 O2 O 0 1 N N N -4.276 37.244 24.759 6.416 -0.121 -1.165 O2 4XI 30 4XI S1 S1 S 0 1 Y N N -5.221 37.615 29.769 2.232 0.396 0.634 S1 4XI 31 4XI CL1 CL1 CL 0 0 N N N -9.921 39.684 28.229 0.920 -4.744 1.487 CL1 4XI 32 4XI H1 H1 H 0 1 N N N -9.538 32.363 34.045 -5.326 0.204 -0.181 H1 4XI 33 4XI H2 H2 H 0 1 N N N -8.243 35.637 30.253 -2.014 -0.892 1.638 H2 4XI 34 4XI H3 H3 H 0 1 N N N -8.970 37.016 28.346 -1.201 -3.083 2.412 H3 4XI 35 4XI H4 H4 H 0 1 N N N -9.767 40.253 31.001 1.799 -3.040 -0.621 H4 4XI 36 4XI H5 H5 H 0 1 N N N -9.043 38.870 32.904 0.989 -0.846 -1.390 H5 4XI 37 4XI H6 H6 H 0 1 N N N -4.802 35.871 32.727 -0.287 0.207 2.065 H6 4XI 38 4XI H7 H7 H 0 1 N N N -5.750 37.380 32.495 -0.431 1.878 2.661 H7 4XI 39 4XI H8 H8 H 0 1 N N N -5.237 34.546 27.849 3.581 3.739 0.714 H8 4XI 40 4XI H9 H9 H 0 1 N N N -7.743 30.660 33.962 -6.254 0.913 1.987 H9 4XI 41 4XI H10 H10 H 0 1 N N N -9.895 34.503 31.426 -3.850 -1.018 -1.640 H10 4XI 42 4XI H11 H11 H 0 1 N N N -10.760 35.914 32.126 -2.550 -1.627 -0.587 H11 4XI 43 4XI H12 H12 H 0 1 N N N -9.600 34.540 35.346 -2.451 2.491 -1.720 H12 4XI 44 4XI H13 H13 H 0 1 N N N -9.204 36.285 35.186 -3.790 1.488 -2.329 H13 4XI 45 4XI H14 H14 H 0 1 N N N -11.328 36.566 33.853 -2.078 1.786 -4.083 H14 4XI 46 4XI H15 H15 H 0 1 N N N -11.586 36.083 35.564 -0.831 1.132 -2.994 H15 4XI 47 4XI H16 H16 H 0 1 N N N -12.117 33.839 32.189 -0.887 -1.185 -2.357 H16 4XI 48 4XI H17 H17 H 0 1 N N N -10.853 33.060 33.200 -2.176 -2.247 -2.974 H17 4XI 49 4XI H18 H18 H 0 1 N N N -5.476 31.274 33.262 -4.789 1.957 3.668 H18 4XI 50 4XI H19 H19 H 0 1 N N N -8.033 36.981 33.749 -0.401 1.014 -1.163 H19 4XI 51 4XI H20 H20 H 0 1 N N N -13.793 35.347 34.815 -1.893 -1.614 -5.256 H20 4XI 52 4XI H21 H21 H 0 1 N N N -13.417 35.664 33.088 -1.792 0.108 -5.697 H21 4XI 53 4XI H22 H22 H 0 1 N N N -13.909 34.018 33.612 -0.479 -0.650 -4.764 H22 4XI 54 4XI H23 H23 H 0 1 N N N -4.932 33.602 32.622 -2.407 2.305 3.185 H23 4XI 55 4XI H24 H24 H 0 1 N N N -5.665 34.088 30.378 1.215 3.649 1.658 H24 4XI 56 4XI H25 H25 H 0 1 N N N -4.731 35.648 26.003 4.515 -0.614 -0.486 H25 4XI 57 4XI H27 H27 H 0 1 N N N -4.218 38.184 24.881 6.574 -1.045 -1.403 H27 4XI 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4XI O2 N2 SING N N 1 4XI N2 C13 SING N N 2 4XI O1 C13 DOUB N N 3 4XI C13 C11 SING N N 4 4XI CL1 C4 SING N N 5 4XI C11 C10 DOUB Y N 6 4XI C11 S1 SING Y N 7 4XI C10 C9 SING Y N 8 4XI C3 C4 DOUB Y N 9 4XI C3 C2 SING Y N 10 4XI C4 C5 SING Y N 11 4XI S1 C8 SING Y N 12 4XI C9 C8 DOUB Y N 13 4XI C2 C25 DOUB Y N 14 4XI C8 C7 SING N N 15 4XI C5 C6 DOUB Y N 16 4XI C25 C6 SING Y N 17 4XI C25 C23 SING N N 18 4XI C7 N1 SING N N 19 4XI C14 C17 SING N N 20 4XI C14 C24 SING N N 21 4XI N1 C23 SING N N 22 4XI N1 C21 SING N N 23 4XI C23 C24 SING N N 24 4XI C20 C21 DOUB Y N 25 4XI C20 C19 SING Y N 26 4XI C17 N3 SING N N 27 4XI C21 C22 SING Y N 28 4XI C19 C12 DOUB Y N 29 4XI C24 C22 SING N N 30 4XI C24 C15 SING N N 31 4XI C22 C1 DOUB Y N 32 4XI C12 C1 SING Y N 33 4XI C18 N3 SING N N 34 4XI N3 C16 SING N N 35 4XI C16 C15 SING N N 36 4XI C1 H1 SING N N 37 4XI C2 H2 SING N N 38 4XI C3 H3 SING N N 39 4XI C5 H4 SING N N 40 4XI C6 H5 SING N N 41 4XI C7 H6 SING N N 42 4XI C7 H7 SING N N 43 4XI C10 H8 SING N N 44 4XI C12 H9 SING N N 45 4XI C14 H10 SING N N 46 4XI C14 H11 SING N N 47 4XI C15 H12 SING N N 48 4XI C15 H13 SING N N 49 4XI C16 H14 SING N N 50 4XI C16 H15 SING N N 51 4XI C17 H16 SING N N 52 4XI C17 H17 SING N N 53 4XI C19 H18 SING N N 54 4XI C23 H19 SING N N 55 4XI C18 H20 SING N N 56 4XI C18 H21 SING N N 57 4XI C18 H22 SING N N 58 4XI C20 H23 SING N N 59 4XI C9 H24 SING N N 60 4XI N2 H25 SING N N 61 4XI O2 H27 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4XI InChI InChI 1.03 "InChI=1S/C25H26ClN3O2S/c1-28-14-12-25(13-15-28)20-4-2-3-5-21(20)29(23(25)17-6-8-18(26)9-7-17)16-19-10-11-22(32-19)24(30)27-31/h2-11,23,31H,12-16H2,1H3,(H,27,30)/t23-/m0/s1" 4XI InChIKey InChI 1.03 DLQYRYFSBDRUBH-QHCPKHFHSA-N 4XI SMILES_CANONICAL CACTVS 3.385 "CN1CCC2(CC1)[C@@H](N(Cc3sc(cc3)C(=O)NO)c4ccccc24)c5ccc(Cl)cc5" 4XI SMILES CACTVS 3.385 "CN1CCC2(CC1)[CH](N(Cc3sc(cc3)C(=O)NO)c4ccccc24)c5ccc(Cl)cc5" 4XI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)c3ccccc3N([C@H]2c4ccc(cc4)Cl)Cc5ccc(s5)C(=O)NO" 4XI SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)c3ccccc3N(C2c4ccc(cc4)Cl)Cc5ccc(s5)C(=O)NO" # _pdbx_chem_comp_identifier.comp_id 4XI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[(2~{S})-2-(4-chlorophenyl)-1'-methyl-spiro[2~{H}-indole-3,4'-piperidine]-1-yl]methyl]-~{N}-oxidanyl-thiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4XI "Create component" 2021-07-07 PDBE 4XI "Initial release" 2022-07-20 RCSB #