data_4XN
#
_chem_comp.id 4XN
_chem_comp.name "6-{[(3R)-1-(cyclopropylcarbonyl)pyrrolidin-3-yl]methyl}-5-[4-(1-methyl-1H-indazol-5-yl)phenyl]-4,6-diazaspiro[2.4]hept-4-en-7-one"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H29 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-06-17
_chem_comp.pdbx_modified_date 2016-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 467.562
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4XN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5C37
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4XN C10 C1 C 0 1 Y N N 15.154 27.553 -4.435 4.356 -0.638 -0.909 C10 4XN 1
4XN C12 C2 C 0 1 Y N N 13.773 27.869 -4.373 3.562 -0.616 0.227 C12 4XN 2
4XN C13 C3 C 0 1 Y N N 12.861 26.857 -3.984 4.066 -0.102 1.429 C13 4XN 3
4XN C15 C4 C 0 1 Y N N 13.313 25.576 -3.627 5.339 0.382 1.499 C15 4XN 4
4XN C19 C5 C 0 1 Y N N 12.071 29.280 -5.489 1.375 -1.115 1.313 C19 4XN 5
4XN C21 C6 C 0 1 Y N N 11.574 30.511 -5.938 0.085 -1.594 1.260 C21 4XN 6
4XN C24 C7 C 0 1 Y N N 13.527 31.636 -5.017 0.379 -2.122 -1.082 C24 4XN 7
4XN N29 N1 N 0 1 N N N 11.916 33.307 -7.462 -2.143 -3.713 -0.607 N29 4XN 8
4XN C30 C8 C 0 1 N N N 11.271 34.575 -7.678 -3.588 -3.877 -0.439 C30 4XN 9
4XN C31 C9 C 0 1 N N N 11.967 35.549 -8.594 -4.467 -4.455 -1.540 C31 4XN 10
4XN C34 C10 C 0 1 N N N 10.684 34.853 -9.038 -4.228 -5.246 -0.251 C34 4XN 11
4XN C01 C11 C 0 1 N N N 14.979 22.875 -2.946 8.343 1.373 1.120 C01 4XN 12
4XN N05 N2 N 0 1 Y N N 15.447 24.173 -3.395 7.444 0.774 0.131 N05 4XN 13
4XN N06 N3 N 0 1 Y N N 16.779 24.369 -3.595 7.762 0.522 -1.207 N06 4XN 14
4XN C07 C12 C 0 1 Y N N 16.905 25.613 -4.000 6.745 -0.016 -1.816 C07 4XN 15
4XN C09 C13 C 0 1 Y N N 15.639 26.274 -4.078 5.662 -0.144 -0.845 C09 4XN 16
4XN C17 C14 C 0 1 Y N N 14.689 25.300 -3.674 6.156 0.370 0.370 C17 4XN 17
4XN C18 C15 C 0 1 Y N N 13.294 29.200 -4.787 2.175 -1.137 0.170 C18 4XN 18
4XN C23 C16 C 0 1 Y N N 12.297 31.694 -5.703 -0.422 -2.101 0.062 C23 4XN 19
4XN C26 C17 C 0 1 Y N N 14.023 30.394 -4.569 1.671 -1.648 -1.025 C26 4XN 20
4XN C28 C18 C 0 1 N N N 11.739 32.978 -6.218 -1.807 -2.616 0.004 C28 4XN 21
4XN C37 C19 C 0 1 N N N 10.675 34.933 -6.378 -4.019 -2.681 0.374 C37 4XN 22
4XN O38 O1 O 0 1 N N N 10.031 35.950 -6.125 -5.139 -2.406 0.751 O38 4XN 23
4XN N39 N4 N 0 1 N N N 10.983 33.938 -5.543 -2.881 -1.984 0.590 N39 4XN 24
4XN C40 C20 C 0 1 N N N 10.621 33.858 -4.121 -2.801 -0.729 1.343 C40 4XN 25
4XN C43 C21 C 0 1 N N R 9.341 33.051 -3.837 -3.144 0.442 0.421 C43 4XN 26
4XN C45 C22 C 0 1 N N N 8.112 33.460 -4.635 -1.992 0.717 -0.581 C45 4XN 27
4XN C48 C23 C 0 1 N N N 7.533 34.620 -3.828 -2.165 2.216 -0.904 C48 4XN 28
4XN N51 N5 N 0 1 N N N 8.099 34.494 -2.481 -2.917 2.818 0.207 N51 4XN 29
4XN C52 C24 C 0 1 N N N 8.852 33.240 -2.405 -3.194 1.774 1.210 C52 4XN 30
4XN C55 C25 C 0 1 N N N 7.980 35.367 -1.454 -3.289 4.110 0.294 C55 4XN 31
4XN O56 O2 O 0 1 N N N 8.512 35.136 -0.360 -3.909 4.498 1.262 O56 4XN 32
4XN C57 C26 C 0 1 N N N 7.168 36.618 -1.683 -2.936 5.073 -0.811 C57 4XN 33
4XN C59 C27 C 0 1 N N N 7.583 37.875 -0.942 -3.388 6.526 -0.652 C59 4XN 34
4XN C62 C28 C 0 1 N N N 6.336 37.137 -0.525 -4.082 5.615 -1.668 C62 4XN 35
4XN H11 H1 H 0 1 N N N 15.853 28.308 -4.763 3.970 -1.039 -1.835 H11 4XN 36
4XN H14 H2 H 0 1 N N N 11.803 27.074 -3.962 3.440 -0.089 2.309 H14 4XN 37
4XN H16 H3 H 0 1 N N N 12.612 24.814 -3.321 5.714 0.776 2.432 H16 4XN 38
4XN H20 H4 H 0 1 N N N 11.510 28.378 -5.683 1.766 -0.719 2.238 H20 4XN 39
4XN H22 H5 H 0 1 N N N 10.633 30.551 -6.466 -0.534 -1.578 2.144 H22 4XN 40
4XN H25 H6 H 0 1 N N N 14.088 32.541 -4.835 -0.011 -2.518 -2.007 H25 4XN 41
4XN H33 H7 H 0 1 N N N 12.928 35.280 -9.056 -5.452 -4.011 -1.684 H33 4XN 42
4XN H32 H8 H 0 1 N N N 11.959 36.625 -8.363 -3.974 -4.807 -2.446 H32 4XN 43
4XN H35 H9 H 0 1 N N N 9.749 35.426 -9.128 -3.578 -6.118 -0.308 H35 4XN 44
4XN H36 H10 H 0 1 N N N 10.718 34.081 -9.821 -5.056 -5.322 0.454 H36 4XN 45
4XN H04 H11 H 0 1 N N N 15.837 22.197 -2.827 8.225 2.457 1.109 H04 4XN 46
4XN H02 H12 H 0 1 N N N 14.462 22.985 -1.981 8.099 0.992 2.112 H02 4XN 47
4XN H03 H13 H 0 1 N N N 14.283 22.459 -3.689 9.374 1.117 0.876 H03 4XN 48
4XN H08 H14 H 0 1 N N N 17.848 26.079 -4.244 6.708 -0.314 -2.853 H08 4XN 49
4XN H27 H15 H 0 1 N N N 14.971 30.353 -4.053 2.291 -1.665 -1.910 H27 4XN 50
4XN H42 H16 H 0 1 N N N 11.454 33.385 -3.580 -3.508 -0.758 2.172 H42 4XN 51
4XN H41 H17 H 0 1 N N N 10.474 34.881 -3.745 -1.790 -0.602 1.731 H41 4XN 52
4XN H44 H18 H 0 1 N N N 9.546 31.984 -4.010 -4.084 0.262 -0.102 H44 4XN 53
4XN H46 H19 H 0 1 N N N 8.391 33.786 -5.648 -1.024 0.532 -0.116 H46 4XN 54
4XN H47 H20 H 0 1 N N N 7.393 32.630 -4.702 -2.111 0.112 -1.481 H47 4XN 55
4XN H49 H21 H 0 1 N N N 7.824 35.581 -4.277 -1.188 2.691 -0.992 H49 4XN 56
4XN H50 H22 H 0 1 N N N 6.436 34.550 -3.790 -2.721 2.333 -1.834 H50 4XN 57
4XN H54 H23 H 0 1 N N N 8.204 32.407 -2.095 -4.183 1.920 1.646 H54 4XN 58
4XN H53 H24 H 0 1 N N N 9.697 33.327 -1.706 -2.431 1.783 1.988 H53 4XN 59
4XN H58 H25 H 0 1 N N N 6.749 36.757 -2.690 -1.980 4.893 -1.303 H58 4XN 60
4XN H61 H26 H 0 1 N N N 8.472 37.862 -0.294 -3.940 6.786 0.250 H61 4XN 61
4XN H60 H27 H 0 1 N N N 7.502 38.855 -1.435 -2.729 7.302 -1.041 H60 4XN 62
4XN H63 H28 H 0 1 N N N 5.347 37.579 -0.714 -3.879 5.793 -2.724 H63 4XN 63
4XN H64 H29 H 0 1 N N N 6.316 36.587 0.427 -5.090 5.276 -1.433 H64 4XN 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4XN C34 C31 SING N N 1
4XN C34 C30 SING N N 2
4XN C31 C30 SING N N 3
4XN C30 N29 SING N N 4
4XN C30 C37 SING N N 5
4XN N29 C28 DOUB N N 6
4XN C37 O38 DOUB N N 7
4XN C37 N39 SING N N 8
4XN C28 C23 SING N N 9
4XN C28 N39 SING N N 10
4XN C21 C23 DOUB Y N 11
4XN C21 C19 SING Y N 12
4XN C23 C24 SING Y N 13
4XN N39 C40 SING N N 14
4XN C19 C18 DOUB Y N 15
4XN C24 C26 DOUB Y N 16
4XN C18 C26 SING Y N 17
4XN C18 C12 SING N N 18
4XN C45 C43 SING N N 19
4XN C45 C48 SING N N 20
4XN C10 C12 DOUB Y N 21
4XN C10 C09 SING Y N 22
4XN C12 C13 SING Y N 23
4XN C40 C43 SING N N 24
4XN C09 C07 SING Y N 25
4XN C09 C17 DOUB Y N 26
4XN C07 N06 DOUB Y N 27
4XN C13 C15 DOUB Y N 28
4XN C43 C52 SING N N 29
4XN C48 N51 SING N N 30
4XN C17 C15 SING Y N 31
4XN C17 N05 SING Y N 32
4XN N06 N05 SING Y N 33
4XN N05 C01 SING N N 34
4XN N51 C52 SING N N 35
4XN N51 C55 SING N N 36
4XN C57 C55 SING N N 37
4XN C57 C59 SING N N 38
4XN C57 C62 SING N N 39
4XN C55 O56 DOUB N N 40
4XN C59 C62 SING N N 41
4XN C10 H11 SING N N 42
4XN C13 H14 SING N N 43
4XN C15 H16 SING N N 44
4XN C19 H20 SING N N 45
4XN C21 H22 SING N N 46
4XN C24 H25 SING N N 47
4XN C31 H33 SING N N 48
4XN C31 H32 SING N N 49
4XN C34 H35 SING N N 50
4XN C34 H36 SING N N 51
4XN C01 H04 SING N N 52
4XN C01 H02 SING N N 53
4XN C01 H03 SING N N 54
4XN C07 H08 SING N N 55
4XN C26 H27 SING N N 56
4XN C40 H42 SING N N 57
4XN C40 H41 SING N N 58
4XN C43 H44 SING N N 59
4XN C45 H46 SING N N 60
4XN C45 H47 SING N N 61
4XN C48 H49 SING N N 62
4XN C48 H50 SING N N 63
4XN C52 H54 SING N N 64
4XN C52 H53 SING N N 65
4XN C57 H58 SING N N 66
4XN C59 H61 SING N N 67
4XN C59 H60 SING N N 68
4XN C62 H63 SING N N 69
4XN C62 H64 SING N N 70
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4XN SMILES ACDLabs 12.01 "c1c(ccc2n(C)ncc12)c3ccc(cc3)C4=NC7(C(=O)N4CC5CN(CC5)C(=O)C6CC6)CC7"
4XN InChI InChI 1.03 "InChI=1S/C28H29N5O2/c1-31-24-9-8-22(14-23(24)15-29-31)19-2-4-20(5-3-19)25-30-28(11-12-28)27(35)33(25)17-18-10-13-32(16-18)26(34)21-6-7-21/h2-5,8-9,14-15,18,21H,6-7,10-13,16-17H2,1H3/t18-/m1/s1"
4XN InChIKey InChI 1.03 KYFZEWZCYBWMGN-GOSISDBHSA-N
4XN SMILES_CANONICAL CACTVS 3.385 "Cn1ncc2cc(ccc12)c3ccc(cc3)C4=NC5(CC5)C(=O)N4C[C@@H]6CCN(C6)C(=O)C7CC7"
4XN SMILES CACTVS 3.385 "Cn1ncc2cc(ccc12)c3ccc(cc3)C4=NC5(CC5)C(=O)N4C[CH]6CCN(C6)C(=O)C7CC7"
4XN SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cn1c2ccc(cc2cn1)c3ccc(cc3)C4=NC5(CC5)C(=O)N4C[C@@H]6CCN(C6)C(=O)C7CC7"
4XN SMILES "OpenEye OEToolkits" 1.9.2 "Cn1c2ccc(cc2cn1)c3ccc(cc3)C4=NC5(CC5)C(=O)N4CC6CCN(C6)C(=O)C7CC7"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4XN "SYSTEMATIC NAME" ACDLabs 12.01 "6-{[(3R)-1-(cyclopropylcarbonyl)pyrrolidin-3-yl]methyl}-5-[4-(1-methyl-1H-indazol-5-yl)phenyl]-4,6-diazaspiro[2.4]hept-4-en-7-one"
4XN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "6-[[(3R)-1-cyclopropylcarbonylpyrrolidin-3-yl]methyl]-5-[4-(1-methylindazol-5-yl)phenyl]-4,6-diazaspiro[2.4]hept-4-en-7-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4XN "Other modification" 2015-06-17 RCSB
4XN "Initial release" 2016-06-22 RCSB
#