data_4YG # _chem_comp.id 4YG _chem_comp.name "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-[N-(methanesulfonyl)-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H39 N5 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.769 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 4YG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RFU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 4YG C22 C1 C 0 1 Y N N N N N 7.838 -5.295 25.748 8.767 0.766 0.368 C22 4YG 1 4YG C23 C2 C 0 1 Y N N N N N 9.107 -5.816 25.514 8.740 0.595 -1.009 C23 4YG 2 4YG C21 C3 C 0 1 Y N N N N N 7.141 -4.619 24.735 7.717 0.371 1.140 C21 4YG 3 4YG C24 C4 C 0 1 Y N N N N N 9.705 -5.674 24.258 7.640 0.027 -1.612 C24 4YG 4 4YG C20 C5 C 0 1 Y N N N N N 7.720 -4.466 23.451 6.578 -0.214 0.551 C20 4YG 5 4YG C25 C6 C 0 1 Y N N N N N 8.998 -4.998 23.247 6.554 -0.378 -0.838 C25 4YG 6 4YG C19 C7 C 0 1 Y N N N N N 7.980 -3.852 21.317 4.547 -1.163 0.367 C19 4YG 7 4YG C17 C8 C 0 1 N N N N N N 6.295 1.228 18.054 3.077 1.801 -0.738 C17 4YG 8 4YG C11 C9 C 0 1 N N N N N N 8.997 -0.462 21.722 -0.296 -0.975 0.125 C11 4YG 9 4YG C6 C10 C 0 1 N N N N N N 10.255 2.295 22.309 -3.485 0.241 0.516 C6 4YG 10 4YG C15 C11 C 0 1 N N N N N N 5.784 0.870 20.337 3.564 2.710 1.444 C15 4YG 11 4YG C16 C12 C 0 1 N N N N N N 5.269 2.220 19.885 2.708 3.671 0.589 C16 4YG 12 4YG C7 C13 C 0 1 N N N N N N 11.063 0.688 24.128 -2.836 -1.199 -1.474 C7 4YG 13 4YG C14 C14 C 0 1 N N S N N N 6.831 0.516 19.278 3.404 1.377 0.677 C14 4YG 14 4YG C10 C15 C 0 1 N N S N N N 10.442 -0.134 21.925 -1.643 -1.522 0.524 C10 4YG 15 4YG C8 C16 C 0 1 N N S N N N 11.550 -0.715 23.991 -2.633 -2.726 -1.372 C8 4YG 16 4YG C9 C17 C 0 1 N N R N N N 11.172 -1.226 22.643 -1.845 -2.936 -0.062 C9 4YG 17 4YG C26 C18 C 0 1 N N N N N N 12.636 -1.221 23.054 -3.314 -3.468 -0.221 C26 4YG 18 4YG C27 C19 C 0 1 N N N N N N 13.560 -0.224 22.449 -4.417 -2.734 0.545 C27 4YG 19 4YG C28 C20 C 0 1 N N N N N N 13.245 -2.529 23.389 -3.505 -4.980 -0.363 C28 4YG 20 4YG C1 C21 C 0 1 N N N N N N 8.720 4.994 24.422 -3.630 3.133 0.324 C1 4YG 21 4YG C3 C22 C 0 1 N N N N N N 7.733 3.713 22.611 -2.961 1.978 -1.788 C3 4YG 22 4YG C5 C23 C 0 1 N N N N N N 12.898 4.625 20.951 -7.472 -0.725 -0.338 C5 4YG 23 4YG C13 C24 C 0 1 N N N N N N 6.926 -0.976 19.008 2.257 0.554 1.267 C13 4YG 24 4YG C18 C25 C 0 1 N N S N N N 7.698 -3.230 19.982 3.231 -1.710 0.857 C18 4YG 25 4YG C4 C26 C 0 1 N N S N N N 10.186 3.452 23.269 -4.605 0.904 -0.243 C4 4YG 26 4YG C2 C27 C 0 1 N N N N N N 8.754 3.668 23.726 -4.114 2.235 -0.816 C2 4YG 27 4YG C12 C28 C 0 1 N N S N N N 7.493 -1.731 20.205 2.105 -0.747 0.477 C12 4YG 28 4YG N5 N1 N 0 1 Y N N N N N 7.161 -3.821 22.352 5.448 -0.667 1.127 N5 4YG 29 4YG N4 N2 N 0 1 N N N N N N 5.252 2.054 18.463 2.696 3.090 -0.759 N4 4YG 30 4YG N2 N3 N 0 1 N N N N N N 10.437 1.024 22.834 -2.739 -0.712 -0.078 N2 4YG 31 4YG N3 N4 N 0 1 N N N N N N 8.788 -1.201 20.578 0.811 -1.360 0.790 N3 4YG 32 4YG N1 N5 N 0 1 N N N N N N 10.695 4.624 22.500 -5.731 1.147 0.661 N1 4YG 33 4YG O5 O1 O 0 1 N N N N N N 6.747 1.114 16.929 3.153 1.084 -1.713 O5 4YG 34 4YG O4 O2 O 0 1 N N N N N N 8.145 -0.094 22.518 -0.208 -0.190 -0.795 O4 4YG 35 4YG O3 O3 O 0 1 N N N N N N 10.110 2.506 21.115 -3.255 0.564 1.663 O3 4YG 36 4YG O1 O4 O 0 1 N N N N N N 13.075 4.139 23.475 -7.300 1.836 -1.067 O1 4YG 37 4YG O2 O5 O 0 1 N N N N N N 12.535 6.484 22.696 -8.090 1.347 1.226 O2 4YG 38 4YG O6 O6 O 0 1 N N N N N N 6.517 -3.823 19.441 3.275 -1.855 2.278 O6 4YG 39 4YG S2 S1 S 0 1 Y N N N N N 9.461 -4.682 21.619 5.021 -1.127 -1.272 S2 4YG 40 4YG S1 S2 S 0 1 N N N N N N 12.371 5.047 22.586 -7.285 1.025 0.100 S1 4YG 41 4YG H29 H1 H 0 1 N N N N N N 7.384 -5.412 26.721 9.633 1.213 0.834 H29 4YG 42 4YG H30 H2 H 0 1 N N N N N N 9.632 -6.332 26.305 9.581 0.909 -1.608 H30 4YG 43 4YG H28 H3 H 0 1 N N N N N N 6.160 -4.214 24.935 7.757 0.508 2.211 H28 4YG 44 4YG H31 H4 H 0 1 N N N N N N 10.690 -6.075 24.068 7.620 -0.105 -2.684 H31 4YG 45 4YG H23 H5 H 0 1 N N N N N N 4.974 0.126 20.354 4.606 3.027 1.462 H23 4YG 46 4YG H24 H6 H 0 1 N N N N N N 6.241 0.937 21.335 3.165 2.629 2.456 H24 4YG 47 4YG H25 H7 H 0 1 N N N N N N 5.948 3.031 20.187 1.694 3.727 0.985 H25 4YG 48 4YG H26 H8 H 0 1 N N N N N N 4.261 2.419 20.279 3.160 4.663 0.570 H26 4YG 49 4YG H13 H9 H 0 1 N N N N N N 11.903 1.367 24.335 -2.055 -0.751 -2.088 H13 4YG 50 4YG H14 H10 H 0 1 N N N N N N 10.325 0.760 24.941 -3.819 -0.973 -1.887 H14 4YG 51 4YG H22 H11 H 0 1 N N N N N N 7.814 0.920 19.561 4.334 0.810 0.700 H22 4YG 52 4YG H17 H12 H 0 1 N N N N N N 10.931 0.107 20.970 -1.737 -1.543 1.609 H17 4YG 53 4YG H15 H13 H 0 1 N N N N N N 11.316 -1.382 24.834 -2.383 -3.264 -2.286 H15 4YG 54 4YG H16 H14 H 0 1 N N N N N N 10.693 -2.216 22.622 -1.022 -3.645 0.033 H16 4YG 55 4YG H32 H15 H 0 1 N N N N N N 14.571 -0.365 22.858 -4.451 -1.694 0.224 H32 4YG 56 4YG H33 H16 H 0 1 N N N N N N 13.584 -0.361 21.358 -5.377 -3.209 0.343 H33 4YG 57 4YG H34 H17 H 0 1 N N N N N N 13.208 0.791 22.683 -4.208 -2.778 1.614 H34 4YG 58 4YG H35 H18 H 0 1 N N N N N N 12.481 -3.188 23.827 -3.110 -5.481 0.521 H35 4YG 59 4YG H36 H19 H 0 1 N N N N N N 13.647 -2.991 22.475 -4.567 -5.204 -0.464 H36 4YG 60 4YG H37 H20 H 0 1 N N N N N N 14.059 -2.379 24.113 -2.974 -5.331 -1.248 H37 4YG 61 4YG H3 H21 H 0 1 N N N N N N 9.453 4.997 25.242 -3.280 4.081 -0.084 H3 4YG 62 4YG H1 H22 H 0 1 N N N N N N 8.968 5.791 23.705 -4.451 3.316 1.016 H1 4YG 63 4YG H2 H23 H 0 1 N N N N N N 7.713 5.168 24.830 -2.812 2.641 0.851 H2 4YG 64 4YG H6 H24 H 0 1 N N N N N N 6.731 3.872 23.037 -2.133 1.510 -1.255 H6 4YG 65 4YG H5 H25 H 0 1 N N N N N N 7.975 4.538 21.925 -3.299 1.316 -2.586 H5 4YG 66 4YG H7 H26 H 0 1 N N N N N N 7.750 2.761 22.060 -2.629 2.924 -2.217 H7 4YG 67 4YG H12 H27 H 0 1 N N N N N N 13.971 4.842 20.844 -7.310 -1.340 0.547 H12 4YG 68 4YG H11 H28 H 0 1 N N N N N N 12.721 3.554 20.774 -8.478 -0.898 -0.721 H11 4YG 69 4YG H10 H29 H 0 1 N N N N N N 12.330 5.217 20.218 -6.741 -0.989 -1.102 H10 4YG 70 4YG H21 H30 H 0 1 N N N N N N 5.920 -1.363 18.786 2.476 0.322 2.309 H21 4YG 71 4YG H20 H31 H 0 1 N N N N N N 7.582 -1.140 18.140 1.331 1.126 1.208 H20 4YG 72 4YG H38 H32 H 0 1 N N N N N N 8.556 -3.385 19.311 3.048 -2.682 0.399 H38 4YG 73 4YG H8 H33 H 0 1 N N N N N N 10.831 3.259 24.139 -4.926 0.254 -1.057 H8 4YG 74 4YG H4 H34 H 0 1 N N N N N N 8.479 2.875 24.437 -4.931 2.727 -1.344 H4 4YG 75 4YG H19 H35 H 0 1 N N N N N N 6.798 -1.605 21.048 2.155 -0.532 -0.591 H19 4YG 76 4YG H27 H36 H 0 1 N N N N N N 4.583 2.473 17.849 2.446 3.574 -1.561 H27 4YG 77 4YG H18 H37 H 0 1 N N N N N N 9.567 -1.380 19.977 0.752 -2.043 1.477 H18 4YG 78 4YG H9 H38 H 0 1 N N N N N N 10.179 5.421 22.812 -5.568 1.379 1.589 H9 4YG 79 4YG H39 H39 H 0 1 N N N N N N 6.661 -4.753 19.309 3.434 -1.027 2.753 H39 4YG 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4YG O5 C17 DOUB N N 1 4YG C17 N4 SING N N 2 4YG C17 C14 SING N N 3 4YG N4 C16 SING N N 4 4YG C13 C14 SING N N 5 4YG C13 C12 SING N N 6 4YG C14 C15 SING N N 7 4YG O6 C18 SING N N 8 4YG C16 C15 SING N N 9 4YG C18 C12 SING N N 10 4YG C18 C19 SING N N 11 4YG C12 N3 SING N N 12 4YG N3 C11 SING N N 13 4YG C5 S1 SING N N 14 4YG O3 C6 DOUB N N 15 4YG C19 S2 SING Y N 16 4YG C19 N5 DOUB Y N 17 4YG S2 C25 SING Y N 18 4YG C11 C10 SING N N 19 4YG C11 O4 DOUB N N 20 4YG C10 C9 SING N N 21 4YG C10 N2 SING N N 22 4YG C6 N2 SING N N 23 4YG C6 C4 SING N N 24 4YG N5 C20 SING Y N 25 4YG C27 C26 SING N N 26 4YG N1 S1 SING N N 27 4YG N1 C4 SING N N 28 4YG S1 O2 DOUB N N 29 4YG S1 O1 DOUB N N 30 4YG C3 C2 SING N N 31 4YG C9 C26 SING N N 32 4YG C9 C8 SING N N 33 4YG N2 C7 SING N N 34 4YG C26 C28 SING N N 35 4YG C26 C8 SING N N 36 4YG C25 C20 DOUB Y N 37 4YG C25 C24 SING Y N 38 4YG C4 C2 SING N N 39 4YG C20 C21 SING Y N 40 4YG C2 C1 SING N N 41 4YG C8 C7 SING N N 42 4YG C24 C23 DOUB Y N 43 4YG C21 C22 DOUB Y N 44 4YG C23 C22 SING Y N 45 4YG C22 H29 SING N N 46 4YG C23 H30 SING N N 47 4YG C21 H28 SING N N 48 4YG C24 H31 SING N N 49 4YG C15 H23 SING N N 50 4YG C15 H24 SING N N 51 4YG C16 H25 SING N N 52 4YG C16 H26 SING N N 53 4YG C7 H13 SING N N 54 4YG C7 H14 SING N N 55 4YG C14 H22 SING N N 56 4YG C10 H17 SING N N 57 4YG C8 H15 SING N N 58 4YG C9 H16 SING N N 59 4YG C27 H32 SING N N 60 4YG C27 H33 SING N N 61 4YG C27 H34 SING N N 62 4YG C28 H35 SING N N 63 4YG C28 H36 SING N N 64 4YG C28 H37 SING N N 65 4YG C1 H3 SING N N 66 4YG C1 H1 SING N N 67 4YG C1 H2 SING N N 68 4YG C3 H6 SING N N 69 4YG C3 H5 SING N N 70 4YG C3 H7 SING N N 71 4YG C5 H12 SING N N 72 4YG C5 H11 SING N N 73 4YG C5 H10 SING N N 74 4YG C13 H21 SING N N 75 4YG C13 H20 SING N N 76 4YG C18 H38 SING N N 77 4YG C4 H8 SING N N 78 4YG C2 H4 SING N N 79 4YG C12 H19 SING N N 80 4YG N4 H27 SING N N 81 4YG N3 H18 SING N N 82 4YG N1 H9 SING N N 83 4YG O6 H39 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 4YG SMILES ACDLabs 12.01 "CC(C)C(NS(C)(=O)=O)C(=O)N1CC2C(C1C(=O)NC(CC1CCNC1=O)C(O)c1nc3ccccc3s1)C2(C)C" 4YG InChI InChI 1.03 "InChI=1S/C28H39N5O6S2/c1-14(2)21(32-41(5,38)39)27(37)33-13-16-20(28(16,3)4)22(33)25(36)30-18(12-15-10-11-29-24(15)35)23(34)26-31-17-8-6-7-9-19(17)40-26/h6-9,14-16,18,20-23,32,34H,10-13H2,1-5H3,(H,29,35)(H,30,36)/t15-,16-,18-,20-,21-,22-,23-/m0/s1" 4YG InChIKey InChI 1.03 FSCAOQMZHZLHRY-DECHFVIOSA-N 4YG SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](N[S](C)(=O)=O)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)c4sc5ccccc5n4)C2(C)C" 4YG SMILES CACTVS 3.385 "CC(C)[CH](N[S](C)(=O)=O)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)c4sc5ccccc5n4)C2(C)C" 4YG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](c4nc5ccccc5s4)O)C2(C)C)NS(=O)(=O)C" 4YG SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)N1CC2C(C1C(=O)NC(CC3CCNC3=O)C(c4nc5ccccc5s4)O)C2(C)C)NS(=O)(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 4YG "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-[N-(methanesulfonyl)-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 4YG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(1~{S},2~{S})-1-(1,3-benzothiazol-2-yl)-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-6,6-dimethyl-3-[(2~{S})-3-methyl-2-(methylsulfonylamino)butanoyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 4YG "Create component" 2021-07-15 RCSB 4YG "Initial release" 2021-11-10 RCSB 4YG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 4YG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #