data_4YM
#
_chem_comp.id 4YM
_chem_comp.name "ethyl 4-[(2R)-2-(aminomethyl)morpholin-4-yl]-3-(3-cyanophenyl)-1H-pyrazolo[3,4-b]pyridine-5-carboxylate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H22 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-06
_chem_comp.pdbx_modified_date 2023-09-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 406.438
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 4YM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2Y4M
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4YM C01 C01 C 0 1 N N N 21.295 0.478 7.497 6.750 0.985 0.545 C01 4YM 1
4YM C02 C02 C 0 1 N N N 20.687 -0.762 8.066 5.386 1.244 -0.098 C02 4YM 2
4YM O03 O03 O 0 1 N N N 19.937 -0.648 9.214 4.543 0.073 0.068 O03 4YM 3
4YM C04 C04 C 0 1 N N N 18.782 -1.394 9.322 3.298 0.138 -0.446 C04 4YM 4
4YM O05 O05 O 0 1 N N N 18.835 -2.609 9.266 2.928 1.145 -1.017 O05 4YM 5
4YM C06 C06 C 0 1 Y N N 17.485 -0.673 9.450 2.389 -1.010 -0.316 C06 4YM 6
4YM C07 C07 C 0 1 Y N N 17.362 0.493 8.689 2.871 -2.319 -0.452 C07 4YM 7
4YM N08 N08 N 0 1 Y N N 16.239 1.225 8.726 2.075 -3.356 -0.340 N08 4YM 8
4YM C09 C09 C 0 1 Y N N 15.171 0.848 9.514 0.773 -3.226 -0.091 C09 4YM 9
4YM N10 N10 N 0 1 Y N N 13.955 1.487 9.661 -0.240 -4.129 0.067 N10 4YM 10
4YM N11 N11 N 0 1 Y N N 13.200 0.768 10.538 -1.437 -3.450 0.315 N11 4YM 11
4YM C12 C12 C 0 1 Y N N 13.918 -0.296 10.943 -1.222 -2.157 0.321 C12 4YM 12
4YM C13 C13 C 0 1 Y N N 13.446 -1.241 11.827 -2.237 -1.099 0.549 C13 4YM 13
4YM C14 C14 C 0 1 Y N N 14.305 -2.133 12.445 -2.025 -0.128 1.528 C14 4YM 14
4YM C15 C15 C 0 1 Y N N 13.816 -3.086 13.329 -2.968 0.859 1.742 C15 4YM 15
4YM C16 C16 C 0 1 Y N N 12.462 -3.146 13.599 -4.125 0.890 0.991 C16 4YM 16
4YM C17 C17 C 0 1 Y N N 11.601 -2.257 12.984 -4.349 -0.077 0.008 C17 4YM 17
4YM C18 C18 C 0 1 N N N 10.148 -2.326 13.278 -5.550 -0.043 -0.772 C18 4YM 18
4YM N19 N19 N 0 1 N N N 9.041 -2.381 13.505 -6.503 -0.016 -1.390 N19 4YM 19
4YM C20 C20 C 0 1 Y N N 12.089 -1.303 12.096 -3.398 -1.071 -0.216 C20 4YM 20
4YM C21 C21 C 0 1 Y N N 15.208 -0.288 10.296 0.204 -1.949 0.061 C21 4YM 21
4YM C22 C22 C 0 1 Y N N 16.415 -1.083 10.275 1.021 -0.812 -0.046 C22 4YM 22
4YM N23 N23 N 0 1 N N N 16.528 -2.299 11.062 0.500 0.457 0.103 N23 4YM 23
4YM C24 C24 C 0 1 N N N 16.389 -3.415 10.216 1.367 1.286 0.953 C24 4YM 24
4YM C25 C25 C 0 1 N N N 16.419 -4.671 11.015 0.724 2.662 1.140 C25 4YM 25
4YM O26 O26 O 0 1 N N N 17.597 -4.763 11.767 0.496 3.255 -0.142 O26 4YM 26
4YM C27 C27 C 0 1 N N R 17.852 -3.644 12.581 -0.345 2.474 -0.996 C27 4YM 27
4YM C28 C28 C 0 1 N N N 16.966 -3.666 13.794 -1.721 2.312 -0.347 C28 4YM 28
4YM N29 N29 N 0 1 N N N 17.023 -2.384 14.449 -2.387 3.619 -0.277 N29 4YM 29
4YM C30 C30 C 0 1 N N N 17.691 -2.343 11.852 0.288 1.096 -1.204 C30 4YM 30
4YM H01 H01 H 0 1 N N N 21.860 0.226 6.587 7.383 1.864 0.421 H01 4YM 31
4YM H01A H01A H 0 0 N N N 20.499 1.195 7.247 6.618 0.780 1.608 H01A 4YM 32
4YM H01B H01B H 0 0 N N N 21.974 0.926 8.237 7.221 0.127 0.066 H01B 4YM 33
4YM H02 H02 H 0 1 N N N 20.035 -1.191 7.291 4.915 2.102 0.382 H02 4YM 34
4YM H02A H02A H 0 0 N N N 21.509 -1.460 8.281 5.518 1.449 -1.160 H02A 4YM 35
4YM H07 H07 H 0 1 N N N 18.183 0.809 8.062 3.920 -2.477 -0.655 H07 4YM 36
4YM HN10 HN10 H 0 0 N N N 13.677 2.331 9.203 -0.144 -5.093 0.014 HN10 4YM 37
4YM H14 H14 H 0 1 N N N 15.364 -2.088 12.238 -1.122 -0.147 2.120 H14 4YM 38
4YM H15 H15 H 0 1 N N N 14.493 -3.780 13.805 -2.799 1.608 2.501 H15 4YM 39
4YM H16 H16 H 0 1 N N N 12.078 -3.884 14.288 -4.859 1.664 1.164 H16 4YM 40
4YM H20 H20 H 0 1 N N N 11.411 -0.612 11.618 -3.564 -1.819 -0.978 H20 4YM 41
4YM H24 H24 H 0 1 N N N 15.431 -3.348 9.680 1.491 0.807 1.924 H24 4YM 42
4YM H24A H24A H 0 0 N N N 17.215 -3.426 9.490 2.341 1.401 0.477 H24A 4YM 43
4YM H25 H25 H 0 1 N N N 15.556 -4.684 11.697 -0.225 2.552 1.664 H25 4YM 44
4YM H25A H25A H 0 0 N N N 16.360 -5.532 10.333 1.390 3.299 1.722 H25A 4YM 45
4YM H27 H27 H 0 1 N N N 18.893 -3.697 12.934 -0.453 2.975 -1.958 H27 4YM 46
4YM H28 H28 H 0 1 N N N 15.930 -3.877 13.489 -2.326 1.628 -0.943 H28 4YM 47
4YM H28A H28A H 0 0 N N N 17.311 -4.448 14.487 -1.604 1.909 0.659 H28A 4YM 48
4YM HN29 HN29 H 0 0 N N N 16.434 -2.396 15.257 -2.450 4.043 -1.191 HN29 4YM 49
4YM HN2A HN2A H 0 0 N N N 17.965 -2.193 14.726 -3.298 3.539 0.148 HN2A 4YM 50
4YM H30 H30 H 0 1 N N N 18.564 -2.196 11.200 1.244 1.208 -1.715 H30 4YM 51
4YM H30A H30A H 0 0 N N N 17.644 -1.530 12.591 -0.377 0.477 -1.808 H30A 4YM 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4YM C01 C02 SING N N 1
4YM C02 O03 SING N N 2
4YM O03 C04 SING N N 3
4YM C04 O05 DOUB N N 4
4YM C04 C06 SING N N 5
4YM C06 C07 DOUB Y N 6
4YM C06 C22 SING Y N 7
4YM C07 N08 SING Y N 8
4YM N08 C09 DOUB Y N 9
4YM C09 N10 SING Y N 10
4YM C09 C21 SING Y N 11
4YM N10 N11 SING Y N 12
4YM N11 C12 DOUB Y N 13
4YM C12 C13 SING N N 14
4YM C12 C21 SING Y N 15
4YM C13 C14 DOUB Y N 16
4YM C13 C20 SING Y N 17
4YM C14 C15 SING Y N 18
4YM C15 C16 DOUB Y N 19
4YM C16 C17 SING Y N 20
4YM C17 C18 SING N N 21
4YM C17 C20 DOUB Y N 22
4YM C18 N19 TRIP N N 23
4YM C21 C22 DOUB Y N 24
4YM C22 N23 SING N N 25
4YM N23 C24 SING N N 26
4YM N23 C30 SING N N 27
4YM C24 C25 SING N N 28
4YM C25 O26 SING N N 29
4YM O26 C27 SING N N 30
4YM C27 C28 SING N N 31
4YM C27 C30 SING N N 32
4YM C28 N29 SING N N 33
4YM C01 H01 SING N N 34
4YM C01 H01A SING N N 35
4YM C01 H01B SING N N 36
4YM C02 H02 SING N N 37
4YM C02 H02A SING N N 38
4YM C07 H07 SING N N 39
4YM N10 HN10 SING N N 40
4YM C14 H14 SING N N 41
4YM C15 H15 SING N N 42
4YM C16 H16 SING N N 43
4YM C20 H20 SING N N 44
4YM C24 H24 SING N N 45
4YM C24 H24A SING N N 46
4YM C25 H25 SING N N 47
4YM C25 H25A SING N N 48
4YM C27 H27 SING N N 49
4YM C28 H28 SING N N 50
4YM C28 H28A SING N N 51
4YM N29 HN29 SING N N 52
4YM N29 HN2A SING N N 53
4YM C30 H30 SING N N 54
4YM C30 H30A SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4YM InChI InChI 1.06 "InChI=1S/C21H22N6O3/c1-2-29-21(28)16-11-24-20-17(19(16)27-6-7-30-15(10-23)12-27)18(25-26-20)14-5-3-4-13(8-14)9-22/h3-5,8,11,15H,2,6-7,10,12,23H2,1H3,(H,24,25,26)/t15-/m1/s1"
4YM InChIKey InChI 1.06 XEAFNJRJCDEJPR-OAHLLOKOSA-N
4YM SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)c1cnc2[nH]nc(c3cccc(c3)C#N)c2c1N4CCO[C@H](CN)C4"
4YM SMILES CACTVS 3.385 "CCOC(=O)c1cnc2[nH]nc(c3cccc(c3)C#N)c2c1N4CCO[CH](CN)C4"
4YM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)c1cnc2c(c1N3CCO[C@@H](C3)CN)c(n[nH]2)c4cccc(c4)C#N"
4YM SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)c1cnc2c(c1N3CCOC(C3)CN)c(n[nH]2)c4cccc(c4)C#N"
#
_pdbx_chem_comp_identifier.comp_id 4YM
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "ethyl 4-[(2~{R})-2-(aminomethyl)morpholin-4-yl]-3-(3-cyanophenyl)-1~{H}-pyrazolo[3,4-b]pyridine-5-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4YM "Create component" 2011-06-06 EBI
4YM "Other modification" 2011-06-14 EBI
4YM "Modify descriptor" 2023-09-23 RCSB
#