data_515
#
_chem_comp.id 515
_chem_comp.name
;3-({5-[(N-ACETYL-3-{4-[(CARBOXYCARBONYL)(2-CARBOXYPHENYL)AMINO]-1-NAPHTHYL}-L-ALANYL)AMINO]PENTYL}OXY)-2-NAPHTHOIC
ACID
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H37 N3 O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "COMPOUND 23"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-01-30
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 719.736
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 515
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1NNY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
515 C1 C1 C 0 1 Y N N 35.829 28.706 20.617 -1.404 -0.230 -4.880 C1 515 1
515 C2 C2 C 0 1 Y N N 35.078 28.154 21.725 -0.465 -0.371 -5.924 C2 515 2
515 C3 C3 C 0 1 Y N N 33.756 28.692 21.998 0.843 -0.681 -5.620 C3 515 3
515 C4 C4 C 0 1 Y N N 33.189 29.716 21.228 1.244 -0.854 -4.299 C4 515 4
515 C5 C5 C 0 1 Y N N 33.894 30.279 20.129 0.359 -0.723 -3.272 C5 515 5
515 C6 C6 C 0 1 Y N N 35.242 29.773 19.810 -0.984 -0.414 -3.540 C6 515 6
515 N4 N4 N 0 1 N N N 35.523 27.115 22.575 -0.857 -0.200 -7.252 N4 515 7
515 C9 C9 C 0 1 N N S 32.604 30.850 17.968 1.288 0.423 -1.280 C9 515 8
515 N1 N1 N 0 1 N N N 31.984 31.972 17.252 2.397 0.937 -2.087 N1 515 9
515 C10 C10 C 0 1 N N N 32.463 32.361 16.038 3.532 0.220 -2.207 C10 515 10
515 C11 C11 C 0 1 N N N 31.627 29.660 18.190 1.749 0.230 0.141 C11 515 11
515 N2 N2 N 0 1 N N N 30.301 29.970 18.322 0.873 0.359 1.157 N2 515 12
515 C12 C12 C 0 1 N N N 29.282 28.925 18.549 1.321 0.172 2.539 C12 515 13
515 C13 C13 C 0 1 N N N 28.165 29.263 19.595 0.139 0.373 3.490 C13 515 14
515 C14 C14 C 0 1 N N N 26.708 30.683 22.634 -0.106 0.182 7.328 C14 515 15
515 C15 C15 C 0 1 N N N 28.596 29.418 21.068 0.607 0.177 4.934 C15 515 16
515 O1 O1 O 0 1 N N N 26.010 29.417 22.697 -1.209 0.371 8.216 O1 515 17
515 O4 O4 O 0 1 N N N 33.411 31.846 15.445 3.635 -0.849 -1.647 O4 515 18
515 C23 C23 C 0 1 N N N 31.704 33.541 15.433 4.673 0.749 -3.037 C23 515 19
515 C8 C8 C 0 1 N N N 35.923 27.428 23.913 -1.409 -1.226 -7.929 C8 515 20
515 O8 O8 O 0 1 N N N 32.077 28.520 18.247 2.908 -0.041 0.371 O8 515 21
515 C7 C7 C 0 1 N N N 33.195 31.381 19.322 0.820 -0.916 -1.851 C7 515 22
515 O5 O5 O 0 1 N N N 36.207 26.576 24.749 -1.751 -1.077 -9.085 O5 515 23
515 C24 C24 C 0 1 N N N 36.034 28.880 24.411 -1.601 -2.545 -7.259 C24 515 24
515 O6 O6 O 0 1 N N N 36.947 29.607 24.107 -1.260 -2.694 -6.105 O6 515 25
515 C25 C25 C 0 1 Y N N 36.496 24.723 22.133 0.438 1.249 -8.697 C25 515 26
515 C26 C26 C 0 1 Y N N 35.446 25.748 22.088 -0.679 1.030 -7.877 C26 515 27
515 C27 C27 C 0 1 Y N N 34.204 25.337 21.486 -1.603 2.050 -7.688 C27 515 28
515 C28 C28 C 0 1 Y N N 33.986 24.054 20.971 -1.423 3.270 -8.309 C28 515 29
515 C29 C29 C 0 1 Y N N 35.001 23.097 21.022 -0.324 3.487 -9.124 C29 515 30
515 C30 C30 C 0 1 Y N N 36.231 23.430 21.594 0.602 2.488 -9.324 C30 515 31
515 O9 O9 O 0 1 N N N 38.395 23.917 23.222 1.224 -0.932 -8.452 O9 515 32
515 O10 O10 O 0 1 N N N 38.509 26.042 22.625 2.554 0.424 -9.602 O10 515 33
515 C31 C31 C 0 1 N N N 37.869 24.859 22.696 1.426 0.176 -8.907 C31 515 34
515 C32 C32 C 0 1 Y N N 24.676 29.359 23.236 -0.736 0.185 9.475 C32 515 35
515 C33 C33 C 0 1 Y N N 23.937 30.547 23.591 0.579 -0.118 9.663 C33 515 36
515 C34 C34 C 0 1 Y N N 22.621 30.479 24.122 1.077 -0.311 10.962 C34 515 37
515 C35 C35 C 0 1 Y N N 21.976 29.195 24.321 0.205 -0.189 12.075 C35 515 38
515 C36 C36 C 0 1 Y N N 22.686 28.002 23.978 -1.145 0.122 11.867 C36 515 39
515 C37 C37 C 0 1 Y N N 24.017 28.080 23.446 -1.610 0.315 10.575 C37 515 40
515 C38 C38 C 0 1 N N N 24.681 26.824 23.126 -3.029 0.643 10.349 C38 515 41
515 O11 O11 O 0 1 N N N 25.008 26.051 24.166 -3.870 0.755 11.396 O11 515 42
515 O12 O12 O 0 1 N N N 24.917 26.502 22.000 -3.441 0.813 9.219 O12 515 43
515 C16 C16 C 0 1 Y N N 37.145 28.211 20.298 -2.746 0.083 -5.145 C16 515 44
515 C17 C17 C 0 1 Y N N 37.878 28.759 19.203 -3.625 0.212 -4.113 C17 515 45
515 C18 C18 C 0 1 Y N N 37.313 29.799 18.412 -3.212 0.036 -2.794 C18 515 46
515 C19 C19 C 0 1 Y N N 36.011 30.301 18.710 -1.918 -0.268 -2.499 C19 515 47
515 C20 C20 C 0 1 N N N 28.087 30.639 21.918 -0.574 0.378 5.884 C20 515 48
515 O2 O2 O 0 1 N N N 35.025 29.282 25.202 -2.152 -3.570 -7.936 O2 515 49
515 C41 C41 C 0 1 Y N N 21.942 31.694 24.462 2.430 -0.625 11.180 C41 515 50
515 C42 C42 C 0 1 Y N N 20.621 31.638 25.000 2.884 -0.807 12.449 C42 515 51
515 C43 C43 C 0 1 Y N N 19.974 30.379 25.197 2.028 -0.687 13.543 C43 515 52
515 C44 C44 C 0 1 Y N N 20.638 29.155 24.862 0.713 -0.385 13.373 C44 515 53
515 H31 1H3 H 0 1 N N N 33.150 28.302 22.833 1.565 -0.789 -6.416 H31 515 54
515 H41 1H4 H 0 1 N N N 32.181 30.081 21.488 2.275 -1.096 -4.085 H41 515 55
515 H91 1H9 H 0 1 N N N 33.425 30.438 17.336 0.463 1.135 -1.301 H91 515 56
515 H1 H1 H 0 1 N N N 31.190 32.501 17.611 2.315 1.793 -2.535 H1 515 57
515 H2 H2 H 0 1 N N N 30.076 30.962 18.252 -0.054 0.577 0.973 H2 515 58
515 H121 1H12 H 0 0 N N N 28.814 28.636 17.578 1.716 -0.836 2.659 H121 515 59
515 H122 2H12 H 0 0 N N N 29.780 27.966 18.825 2.101 0.897 2.770 H122 515 60
515 H131 1H13 H 0 0 N N N 27.620 30.180 19.270 -0.255 1.382 3.370 H131 515 61
515 H132 2H13 H 0 0 N N N 27.352 28.503 19.525 -0.640 -0.352 3.259 H132 515 62
515 H141 1H14 H 0 0 N N N 26.056 31.458 22.167 0.288 -0.825 7.448 H141 515 63
515 H142 2H14 H 0 0 N N N 26.819 31.112 23.657 0.673 0.908 7.559 H142 515 64
515 H151 1H15 H 0 0 N N N 28.335 28.479 21.610 1.002 -0.831 5.054 H151 515 65
515 H152 2H15 H 0 0 N N N 29.710 29.400 21.111 1.387 0.903 5.164 H152 515 66
515 H231 1H23 H 0 0 N N N 32.096 33.859 14.439 5.498 0.037 -3.016 H231 515 67
515 H232 2H23 H 0 0 N N N 30.612 33.320 15.374 4.340 0.889 -4.066 H232 515 68
515 H233 3H23 H 0 0 N N N 31.681 34.401 16.142 5.006 1.704 -2.631 H233 515 69
515 H71 1H7 H 0 1 N N N 32.410 31.888 19.930 1.645 -1.628 -1.830 H71 515 70
515 H72 2H7 H 0 1 N N N 33.876 32.246 19.150 -0.004 -1.299 -1.250 H72 515 71
515 H271 1H27 H 0 0 N N N 33.366 26.050 21.414 -2.463 1.888 -7.055 H271 515 72
515 H281 1H28 H 0 0 N N N 33.011 23.796 20.523 -2.145 4.059 -8.158 H281 515 73
515 H291 1H29 H 0 0 N N N 34.832 22.086 20.613 -0.193 4.445 -9.605 H291 515 74
515 H301 1H30 H 0 0 N N N 37.012 22.652 21.620 1.457 2.662 -9.960 H301 515 75
515 H10 H10 H 0 1 N N N 39.384 26.128 22.983 3.202 -0.280 -9.739 H10 515 76
515 H331 1H33 H 0 0 N N N 24.393 31.541 23.451 1.239 -0.211 8.812 H331 515 77
515 H361 1H36 H 0 0 N N N 22.206 27.019 24.124 -1.817 0.217 12.707 H361 515 78
515 H11 H11 H 0 1 N N N 25.441 25.231 23.957 -4.801 0.971 11.248 H11 515 79
515 H161 1H16 H 0 0 N N N 37.596 27.403 20.898 -3.080 0.223 -6.163 H161 515 80
515 H171 1H17 H 0 0 N N N 38.885 28.377 18.967 -4.657 0.454 -4.319 H171 515 81
515 H181 1H18 H 0 0 N N N 37.885 30.216 17.566 -3.928 0.144 -1.993 H181 515 82
515 H191 1H19 H 0 0 N N N 35.594 31.106 18.082 -1.612 -0.401 -1.472 H191 515 83
515 H201 1H20 H 0 0 N N N 28.145 31.540 21.264 -0.969 1.387 5.764 H201 515 84
515 H202 2H20 H 0 0 N N N 28.863 30.847 22.690 -1.354 -0.346 5.654 H202 515 85
515 H21 1H2 H 0 1 N N N 35.093 30.178 25.509 -2.276 -4.425 -7.501 H21 515 86
515 H411 1H41 H 0 0 N N N 22.434 32.669 24.310 3.105 -0.722 10.343 H411 515 87
515 H421 1H42 H 0 0 N N N 20.097 32.572 25.264 3.924 -1.048 12.612 H421 515 88
515 H431 1H43 H 0 0 N N N 18.952 30.351 25.611 2.415 -0.837 14.540 H431 515 89
515 H441 1H44 H 0 0 N N N 20.124 28.191 25.019 0.061 -0.295 14.230 H441 515 90
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
515 C1 C2 DOUB Y N 1
515 C1 C6 SING Y N 2
515 C1 C16 SING Y N 3
515 C2 C3 SING Y N 4
515 C2 N4 SING N N 5
515 C3 C4 DOUB Y N 6
515 C3 H31 SING N N 7
515 C4 C5 SING Y N 8
515 C4 H41 SING N N 9
515 C5 C6 DOUB Y N 10
515 C5 C7 SING N N 11
515 C6 C19 SING Y N 12
515 N4 C8 SING N N 13
515 N4 C26 SING N N 14
515 C9 N1 SING N N 15
515 C9 C11 SING N N 16
515 C9 C7 SING N N 17
515 C9 H91 SING N N 18
515 N1 C10 SING N N 19
515 N1 H1 SING N N 20
515 C10 O4 DOUB N N 21
515 C10 C23 SING N N 22
515 C11 N2 SING N N 23
515 C11 O8 DOUB N N 24
515 N2 C12 SING N N 25
515 N2 H2 SING N N 26
515 C12 C13 SING N N 27
515 C12 H121 SING N N 28
515 C12 H122 SING N N 29
515 C13 C15 SING N N 30
515 C13 H131 SING N N 31
515 C13 H132 SING N N 32
515 C14 O1 SING N N 33
515 C14 C20 SING N N 34
515 C14 H141 SING N N 35
515 C14 H142 SING N N 36
515 C15 C20 SING N N 37
515 C15 H151 SING N N 38
515 C15 H152 SING N N 39
515 O1 C32 SING N N 40
515 C23 H231 SING N N 41
515 C23 H232 SING N N 42
515 C23 H233 SING N N 43
515 C8 O5 DOUB N N 44
515 C8 C24 SING N N 45
515 C7 H71 SING N N 46
515 C7 H72 SING N N 47
515 C24 O6 DOUB N N 48
515 C24 O2 SING N N 49
515 C25 C26 DOUB Y N 50
515 C25 C30 SING Y N 51
515 C25 C31 SING N N 52
515 C26 C27 SING Y N 53
515 C27 C28 DOUB Y N 54
515 C27 H271 SING N N 55
515 C28 C29 SING Y N 56
515 C28 H281 SING N N 57
515 C29 C30 DOUB Y N 58
515 C29 H291 SING N N 59
515 C30 H301 SING N N 60
515 O9 C31 DOUB N N 61
515 O10 C31 SING N N 62
515 O10 H10 SING N N 63
515 C32 C33 DOUB Y N 64
515 C32 C37 SING Y N 65
515 C33 C34 SING Y N 66
515 C33 H331 SING N N 67
515 C34 C35 DOUB Y N 68
515 C34 C41 SING Y N 69
515 C35 C36 SING Y N 70
515 C35 C44 SING Y N 71
515 C36 C37 DOUB Y N 72
515 C36 H361 SING N N 73
515 C37 C38 SING N N 74
515 C38 O11 SING N N 75
515 C38 O12 DOUB N N 76
515 O11 H11 SING N N 77
515 C16 C17 DOUB Y N 78
515 C16 H161 SING N N 79
515 C17 C18 SING Y N 80
515 C17 H171 SING N N 81
515 C18 C19 DOUB Y N 82
515 C18 H181 SING N N 83
515 C19 H191 SING N N 84
515 C20 H201 SING N N 85
515 C20 H202 SING N N 86
515 O2 H21 SING N N 87
515 C41 C42 DOUB Y N 88
515 C41 H411 SING N N 89
515 C42 C43 SING Y N 90
515 C42 H421 SING N N 91
515 C43 C44 DOUB Y N 92
515 C43 H431 SING N N 93
515 C44 H441 SING N N 94
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
515 SMILES ACDLabs 10.04 "O=C(O)c1ccccc1N(C(=O)C(=O)O)c3c2c(cccc2)c(cc3)CC(NC(=O)C)C(=O)NCCCCCOc5c(cc4c(cccc4)c5)C(=O)O"
515 SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@@H](Cc1ccc(N(C(=O)C(O)=O)c2ccccc2C(O)=O)c3ccccc13)C(=O)NCCCCCOc4cc5ccccc5cc4C(O)=O"
515 SMILES CACTVS 3.341 "CC(=O)N[CH](Cc1ccc(N(C(=O)C(O)=O)c2ccccc2C(O)=O)c3ccccc13)C(=O)NCCCCCOc4cc5ccccc5cc4C(O)=O"
515 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H](Cc1ccc(c2c1cccc2)N(c3ccccc3C(=O)O)C(=O)C(=O)O)C(=O)NCCCCCOc4cc5ccccc5cc4C(=O)O"
515 SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC(Cc1ccc(c2c1cccc2)N(c3ccccc3C(=O)O)C(=O)C(=O)O)C(=O)NCCCCCOc4cc5ccccc5cc4C(=O)O"
515 InChI InChI 1.03 "InChI=1S/C40H37N3O10/c1-24(44)42-32(36(45)41-19-9-2-10-20-53-35-23-26-12-4-3-11-25(26)21-31(35)39(49)50)22-27-17-18-34(29-14-6-5-13-28(27)29)43(37(46)40(51)52)33-16-8-7-15-30(33)38(47)48/h3-8,11-18,21,23,32H,2,9-10,19-20,22H2,1H3,(H,41,45)(H,42,44)(H,47,48)(H,49,50)(H,51,52)/t32-/m0/s1"
515 InChIKey InChI 1.03 URRKGBLRIVECAH-YTTGMZPUSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
515 "SYSTEMATIC NAME" ACDLabs 10.04 "3-[(5-{[(2S)-2-(acetylamino)-3-{4-[(carboxycarbonyl)(2-carboxyphenyl)amino]naphthalen-1-yl}propanoyl]amino}pentyl)oxy]naphthalene-2-carboxylic acid (non-preferred name)"
515 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[5-[[(2S)-2-acetamido-3-[4-[carboxycarbonyl-(2-carboxyphenyl)amino]naphthalen-1-yl]propanoyl]amino]pentoxy]naphthalene-2-carboxylic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
515 "Create component" 2003-01-30 RCSB
515 "Modify descriptor" 2011-06-04 RCSB
515 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 515
_pdbx_chem_comp_synonyms.name "COMPOUND 23"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##