data_51W # _chem_comp.id 51W _chem_comp.name "N-[3-({4-[(3-aminopropyl)amino]-5-iodopyrimidin-2-yl}amino)phenyl]pyrrolidine-1-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H24 I N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-13 _chem_comp.pdbx_modified_date 2015-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.334 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 51W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5CI7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 51W N12 N1 N 0 1 N N N -4.717 -41.196 -17.805 0.841 0.299 -1.159 N12 51W 1 51W C13 C1 C 0 1 Y N N -3.409 -40.584 -17.956 1.903 -0.610 -1.192 C13 51W 2 51W C15 C2 C 0 1 Y N N -1.564 -39.206 -17.317 4.240 -1.094 -0.921 C15 51W 3 51W C17 C3 C 0 1 N N N 0.440 -38.573 -15.977 5.734 0.266 0.336 C17 51W 4 51W C20 C4 C 0 1 N N N 2.405 -37.123 -13.209 8.767 2.091 1.316 C20 51W 5 51W C21 C5 C 0 1 N N N 1.276 -36.152 -13.239 9.406 0.769 0.813 C21 51W 6 51W C22 C6 C 0 1 N N N 0.491 -36.466 -14.491 8.223 0.053 0.127 C22 51W 7 51W C24 C7 C 0 1 Y N N -0.864 -39.532 -18.459 4.002 -2.419 -1.262 C24 51W 8 51W C26 C8 C 0 1 Y N N -2.681 -40.925 -19.102 1.673 -1.936 -1.539 C26 51W 9 51W N01 N2 N 0 1 N N N -3.429 -35.339 -14.838 -5.600 5.811 -0.439 N01 51W 10 51W C02 C9 C 0 1 N N N -3.716 -36.734 -14.738 -4.372 5.029 -0.628 C02 51W 11 51W C03 C10 C 0 1 N N N -5.078 -37.146 -14.257 -4.639 3.565 -0.273 C03 51W 12 51W C04 C11 C 0 1 N N N -5.168 -38.446 -13.513 -3.359 2.750 -0.470 C04 51W 13 51W N05 N3 N 0 1 N N N -6.376 -39.200 -13.689 -3.616 1.348 -0.131 N05 51W 14 51W C06 C12 C 0 1 Y N N -6.512 -40.080 -14.802 -2.598 0.413 -0.232 C06 51W 15 51W C07 C13 C 0 1 Y N N -7.671 -40.850 -14.927 -2.832 -0.927 0.089 C07 51W 16 51W I08 I1 I 0 1 N N N -9.258 -40.781 -13.531 -4.722 -1.561 0.731 I08 51W 17 51W C09 C14 C 0 1 Y N N -7.784 -41.705 -16.008 -1.787 -1.823 -0.027 C09 51W 18 51W N10 N4 N 0 1 Y N N -6.796 -41.742 -16.891 -0.604 -1.390 -0.437 N10 51W 19 51W C11 C15 C 0 1 Y N N -5.692 -41.018 -16.777 -0.411 -0.114 -0.734 C11 51W 20 51W C14 C16 C 0 1 Y N N -2.849 -39.730 -17.047 3.189 -0.189 -0.886 C14 51W 21 51W N16 N5 N 0 1 N N N -0.929 -38.303 -16.393 5.538 -0.673 -0.611 N16 51W 22 51W N18 N6 N 0 1 N N N 1.086 -37.655 -15.052 6.987 0.614 0.691 N18 51W 23 51W C19 C17 C 0 1 N N N 2.420 -37.765 -14.535 7.344 1.621 1.707 C19 51W 24 51W O23 O1 O 0 1 N N N 1.031 -39.571 -16.408 4.780 0.800 0.869 O23 51W 25 51W C25 C18 C 0 1 Y N N -1.433 -40.403 -19.367 2.721 -2.835 -1.572 C25 51W 26 51W N27 N7 N 0 1 Y N N -5.538 -40.184 -15.727 -1.387 0.776 -0.642 N27 51W 27 51W H121 H1 H 0 0 N N N -4.973 -41.837 -18.528 0.983 1.219 -1.429 H121 51W 28 51W H201 H2 H 0 0 N N N 2.243 -37.874 -12.422 9.302 2.479 2.182 H201 51W 29 51W H202 H3 H 0 0 N N N 3.355 -36.600 -13.026 8.728 2.833 0.518 H202 51W 30 51W H211 H4 H 0 0 N N N 1.659 -35.121 -13.276 10.201 0.973 0.097 H211 51W 31 51W H212 H5 H 0 0 N N N 0.642 -36.276 -12.349 9.783 0.181 1.650 H212 51W 32 51W H222 H6 H 0 0 N N N 0.561 -35.632 -15.204 8.255 0.232 -0.948 H222 51W 33 51W H221 H7 H 0 0 N N N -0.565 -36.649 -14.243 8.272 -1.017 0.326 H221 51W 34 51W H241 H8 H 0 0 N N N 0.114 -39.113 -18.641 4.819 -3.124 -1.290 H241 51W 35 51W H261 H9 H 0 0 N N N -3.113 -41.623 -19.804 0.673 -2.265 -1.782 H261 51W 36 51W H012 H10 H 0 0 N N N -2.494 -35.214 -15.169 -5.449 6.782 -0.667 H012 51W 37 51W H011 H11 H 0 0 N N N -4.068 -34.912 -15.478 -6.360 5.426 -0.980 H011 51W 38 51W H022 H13 H 0 0 N N N -3.579 -37.168 -15.740 -4.053 5.098 -1.668 H022 51W 39 51W H021 H14 H 0 0 N N N -2.980 -37.170 -14.046 -3.587 5.422 0.019 H021 51W 40 51W H031 H15 H 0 0 N N N -5.449 -36.354 -13.590 -4.958 3.495 0.767 H031 51W 41 51W H032 H16 H 0 0 N N N -5.733 -37.220 -15.137 -5.423 3.171 -0.920 H032 51W 42 51W H042 H17 H 0 0 N N N -4.329 -39.077 -13.840 -3.041 2.819 -1.510 H042 51W 43 51W H041 H18 H 0 0 N N N -5.065 -38.225 -12.440 -2.575 3.143 0.177 H041 51W 44 51W H051 H19 H 0 0 N N N -7.123 -38.538 -13.752 -4.498 1.074 0.165 H051 51W 45 51W H091 H20 H 0 0 N N N -8.657 -42.328 -16.130 -1.934 -2.866 0.214 H091 51W 46 51W H141 H21 H 0 0 N N N -3.376 -39.462 -16.143 3.371 0.842 -0.621 H141 51W 47 51W H161 H22 H 0 0 N N N -1.419 -37.505 -16.043 6.296 -1.056 -1.078 H161 51W 48 51W H191 H23 H 0 0 N N N 2.706 -38.823 -14.442 7.352 1.171 2.700 H191 51W 49 51W H192 H24 H 0 0 N N N 3.129 -37.250 -15.199 6.645 2.457 1.674 H192 51W 50 51W H251 H25 H 0 0 N N N -0.908 -40.671 -20.272 2.539 -3.865 -1.842 H251 51W 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 51W C25 C26 DOUB Y N 1 51W C25 C24 SING Y N 2 51W C26 C13 SING Y N 3 51W C24 C15 DOUB Y N 4 51W C13 N12 SING N N 5 51W C13 C14 DOUB Y N 6 51W N12 C11 SING N N 7 51W C15 C14 SING Y N 8 51W C15 N16 SING N N 9 51W N10 C11 DOUB Y N 10 51W N10 C09 SING Y N 11 51W C11 N27 SING Y N 12 51W O23 C17 DOUB N N 13 51W N16 C17 SING N N 14 51W C09 C07 DOUB Y N 15 51W C17 N18 SING N N 16 51W N27 C06 DOUB Y N 17 51W N18 C19 SING N N 18 51W N18 C22 SING N N 19 51W C07 C06 SING Y N 20 51W C07 I08 SING N N 21 51W N01 C02 SING N N 22 51W C06 N05 SING N N 23 51W C02 C03 SING N N 24 51W C19 C20 SING N N 25 51W C22 C21 SING N N 26 51W C03 C04 SING N N 27 51W N05 C04 SING N N 28 51W C21 C20 SING N N 29 51W N12 H121 SING N N 30 51W C20 H201 SING N N 31 51W C20 H202 SING N N 32 51W C21 H211 SING N N 33 51W C21 H212 SING N N 34 51W C22 H222 SING N N 35 51W C22 H221 SING N N 36 51W C24 H241 SING N N 37 51W C26 H261 SING N N 38 51W N01 H012 SING N N 39 51W N01 H011 SING N N 40 51W C02 H022 SING N N 41 51W C02 H021 SING N N 42 51W C03 H031 SING N N 43 51W C03 H032 SING N N 44 51W C04 H042 SING N N 45 51W C04 H041 SING N N 46 51W N05 H051 SING N N 47 51W C09 H091 SING N N 48 51W C14 H141 SING N N 49 51W N16 H161 SING N N 50 51W C19 H191 SING N N 51 51W C19 H192 SING N N 52 51W C25 H251 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 51W SMILES ACDLabs 12.01 "N(c1ncc(c(NCCCN)n1)I)c3cc(NC(N2CCCC2)=O)ccc3" 51W InChI InChI 1.03 "InChI=1S/C18H24IN7O/c19-15-12-22-17(25-16(15)21-8-4-7-20)23-13-5-3-6-14(11-13)24-18(27)26-9-1-2-10-26/h3,5-6,11-12H,1-2,4,7-10,20H2,(H,24,27)(H2,21,22,23,25)" 51W InChIKey InChI 1.03 ZYLHCSSOEGIFAO-UHFFFAOYSA-N 51W SMILES_CANONICAL CACTVS 3.385 "NCCCNc1nc(Nc2cccc(NC(=O)N3CCCC3)c2)ncc1I" 51W SMILES CACTVS 3.385 "NCCCNc1nc(Nc2cccc(NC(=O)N3CCCC3)c2)ncc1I" 51W SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)NC(=O)N2CCCC2)Nc3ncc(c(n3)NCCCN)I" 51W SMILES "OpenEye OEToolkits" 1.9.2 "c1cc(cc(c1)NC(=O)N2CCCC2)Nc3ncc(c(n3)NCCCN)I" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 51W "SYSTEMATIC NAME" ACDLabs 12.01 "N-[3-({4-[(3-aminopropyl)amino]-5-iodopyrimidin-2-yl}amino)phenyl]pyrrolidine-1-carboxamide" 51W "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[3-[[4-(3-azanylpropylamino)-5-iodanyl-pyrimidin-2-yl]amino]phenyl]pyrrolidine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 51W "Create component" 2015-07-13 RCSB 51W "Initial release" 2015-08-26 RCSB #