data_52G # _chem_comp.id 52G _chem_comp.name Zorbamycin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C55 H85 N19 O21 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R,3S,4S,5R,6R)-2-{[(2R,3S,4S,5S,6S)-2-{[(1R,2S)-2-[({6-amino-2-[(1S)-3-amino-1-{[(2S)-2,3-diamino-3-oxopropyl]amino}-3-oxopropyl]-5-methylpyrimidin-4-yl}carbonyl)amino]-3-{[(3R,4S,5S)-6-{[(2S)-1-({2-[(4'R)-4-{[(3E)-3-amino-3-iminopropyl]carbamoyl}-4',5'-dihydro-2,4'-bi-1,3-thiazol-2'-yl]ethyl}amino)-3-hydroxy-3-methyl-1-oxobutan-2-yl]amino}-1,4-dihydroxy-5-methyl-6-oxohexan-3-yl]amino}-1-(1H-imidazol-4-yl)-3-oxopropyl]oxy}-4,5-dihydroxy-6-methyltetrahydro-2H-pyran-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl carbamate (non-preferred name)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-15 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1412.508 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 52G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5CJ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 52G O1 O1 O 0 1 N N N 10.895 -18.990 8.812 2.014 10.330 2.927 O1 52G 1 52G C1 C1 C 0 1 N N N 10.471 -18.353 9.782 2.746 10.545 1.984 C1 52G 2 52G C2 C2 C 0 1 N N S 10.187 -16.803 9.562 3.987 9.712 1.789 C2 52G 3 52G C3 C3 C 0 1 N N N 9.277 -16.579 10.961 3.720 8.641 0.730 C3 52G 4 52G C4 C4 C 0 1 N N N 7.997 -16.394 13.880 4.427 6.008 -2.684 C4 52G 5 52G O4 O2 O 0 1 N N N 8.978 -16.260 14.623 3.914 4.996 -2.256 O4 52G 6 52G C5 C5 C 0 1 N N N 7.766 -15.405 12.684 4.826 7.109 -1.737 C5 52G 7 52G C6 C6 C 0 1 N N S 7.063 -16.058 11.493 4.622 6.640 -0.295 C6 52G 8 52G C7 C7 C 0 1 Y N N 6.823 -15.065 10.497 5.569 5.506 0.003 C7 52G 9 52G C8 C8 C 0 1 Y N N 6.521 -12.862 9.785 7.714 4.803 0.458 C8 52G 10 52G C9 C9 C 0 1 Y N N 6.376 -13.275 8.440 7.253 3.484 0.534 C9 52G 11 52G C10 C10 C 0 1 Y N N 6.407 -14.651 8.175 5.899 3.248 0.322 C10 52G 12 52G O12 O3 O 0 1 N N N 5.733 -14.626 5.911 6.087 0.941 0.672 O12 52G 13 52G NQ N1 N 0 1 N N N 9.158 -9.587 5.571 -1.611 -1.227 -3.170 NQ 52G 14 52G C70 C11 C 0 1 N N N 9.287 -10.919 5.530 -0.695 -2.102 -2.709 C70 52G 15 52G O70 O4 O 0 1 N N N 9.771 -11.537 6.492 -0.274 -1.999 -1.574 O70 52G 16 52G O68 O5 O 0 1 N N N 8.822 -11.561 4.396 -0.247 -3.089 -3.507 O68 52G 17 52G C68 C12 C 0 1 N N S 8.930 -12.983 4.360 0.739 -3.994 -2.945 C68 52G 18 52G C69 C13 C 0 1 N N S 10.361 -13.375 3.892 2.146 -3.453 -3.217 C69 52G 19 52G O69 O6 O 0 1 N N N 10.733 -12.542 2.800 2.326 -3.277 -4.623 O69 52G 20 52G C67 C14 C 0 1 N N R 7.929 -13.427 3.360 0.600 -5.373 -3.597 C67 52G 21 52G O67 O7 O 0 1 N N N 6.605 -13.233 3.873 -0.684 -5.920 -3.288 O67 52G 22 52G C65 C15 C 0 1 N N R 8.073 -14.881 2.971 1.693 -6.298 -3.055 C65 52G 23 52G C66 C16 C 0 1 N N N 7.030 -15.126 1.908 1.598 -7.660 -3.746 C66 52G 24 52G O66 O8 O 0 1 N N N 7.435 -16.285 1.187 2.562 -8.550 -3.181 O66 52G 25 52G O64 O9 O 0 1 N N N 9.398 -15.095 2.464 2.975 -5.721 -3.314 O64 52G 26 52G C64 C17 C 0 1 N N R 10.385 -14.830 3.475 3.180 -4.452 -2.690 C64 52G 27 52G O56 O10 O 0 1 N N N 10.140 -15.626 4.614 3.034 -4.588 -1.275 O56 52G 28 52G C57 C18 C 0 1 N N S 10.419 -16.934 4.150 4.227 -4.313 -0.539 C57 52G 29 52G C58 C19 C 0 1 N N S 11.599 -17.490 4.961 5.282 -5.378 -0.858 C58 52G 30 52G O58 O11 O 0 1 N N N 11.439 -17.215 6.387 4.758 -6.674 -0.561 O58 52G 31 52G C59 C20 C 0 1 N N S 11.754 -18.996 4.767 5.637 -5.297 -2.346 C59 52G 32 52G O59 O12 O 0 1 N N N 12.222 -19.293 3.420 6.673 -6.237 -2.641 O59 52G 33 52G C60 C21 C 0 1 N N S 10.430 -19.670 5.045 6.123 -3.882 -2.671 C60 52G 34 52G C61 C22 C 0 1 N N N 10.597 -21.178 4.867 7.393 -3.583 -1.873 C61 52G 35 52G O62 O13 O 0 1 N N N 9.523 -19.234 4.076 5.107 -2.940 -2.321 O62 52G 36 52G C63 C23 C 0 1 N N R 9.183 -17.811 4.278 4.767 -2.936 -0.933 C63 52G 37 52G OH1 O14 O 0 1 N N N 8.612 -17.720 5.605 3.767 -1.945 -0.690 OH1 52G 38 52G C14 C24 C 0 1 N N R 7.312 -18.404 5.628 4.240 -0.601 -0.806 C14 52G 39 52G C27 C25 C 0 1 Y N N 7.261 -19.365 6.777 3.974 -0.093 -2.199 C27 52G 40 52G NJ N2 N 0 1 Y N N 7.230 -19.101 8.090 2.768 0.056 -2.767 NJ 52G 41 52G C29 C26 C 0 1 Y N N 7.209 -20.250 8.756 2.916 0.518 -3.978 C29 52G 42 52G NI N3 N 0 1 Y N N 7.209 -21.219 7.838 4.235 0.679 -4.222 NI 52G 43 52G C28 C27 C 0 1 Y N N 7.251 -20.692 6.616 4.905 0.296 -3.091 C28 52G 44 52G C13 C28 C 0 1 N N S 6.168 -17.388 5.673 3.513 0.284 0.208 C13 52G 45 52G NH N4 N 0 1 N N N 6.295 -16.594 6.882 4.050 1.646 0.140 NH 52G 46 52G C12 C29 C 0 1 N N N 6.219 -15.253 6.887 5.356 1.869 0.390 C12 52G 47 52G NG N5 N 0 1 Y N N 6.623 -15.447 9.221 5.096 4.280 0.061 NG 52G 48 52G CA C30 C 0 1 N N N 6.148 -12.311 7.402 8.199 2.351 0.837 CA 52G 49 52G NF N6 N 0 1 N N N 6.457 -11.570 10.053 9.053 5.093 0.661 NF 52G 50 52G NE N7 N 0 1 Y N N 6.762 -13.763 10.794 6.846 5.773 0.193 NE 52G 51 52G ND N8 N 0 1 N N N 7.260 -17.451 13.971 4.639 6.148 -4.008 ND 52G 52 52G NC N9 N 0 1 N N N 7.912 -17.114 10.934 4.888 7.755 0.625 NC 52G 53 52G NB N10 N 0 1 N N N 9.482 -16.665 8.460 4.348 9.066 3.058 NB 52G 54 52G NA N11 N 0 1 N N N 10.270 -18.854 10.968 2.448 11.525 1.109 NA 52G 55 52G C30 C31 C 0 1 N N N 4.806 -18.078 5.615 3.717 -0.268 1.595 C30 52G 56 52G O30 O15 O 0 1 N N N 4.400 -18.556 4.561 4.550 0.224 2.327 O30 52G 57 52G NK N12 N 0 1 N N N 4.071 -18.104 6.709 2.975 -1.308 2.023 NK 52G 58 52G C31 C32 C 0 1 N N R 2.743 -18.737 6.689 3.174 -1.845 3.371 C31 52G 59 52G CB C33 C 0 1 N N N 1.666 -17.662 6.729 4.319 -2.859 3.353 CB 52G 60 52G C96 C34 C 0 1 N N N 1.366 -17.002 5.387 5.624 -2.148 2.989 C96 52G 61 52G O97 O16 O 0 1 N N N 2.154 -17.714 4.396 6.694 -3.095 2.972 O97 52G 62 52G C33 C35 C 0 1 N N S 2.527 -19.604 7.960 1.890 -2.533 3.840 C33 52G 63 52G OH2 O17 O 0 1 N N N 1.275 -20.312 7.872 2.043 -2.953 5.198 OH2 52G 64 52G C34 C36 C 0 1 N N S 3.640 -20.629 8.217 0.719 -1.554 3.738 C34 52G 65 52G CC C37 C 0 1 N N N 3.566 -21.775 7.193 0.980 -0.350 4.646 CC 52G 66 52G C36 C38 C 0 1 N N N 3.518 -21.172 9.681 -0.550 -2.242 4.168 C36 52G 67 52G O36 O18 O 0 1 N N N 4.501 -21.602 10.246 -0.522 -3.401 4.523 O36 52G 68 52G NL N13 N 0 1 N N N 2.316 -21.072 10.298 -1.718 -1.569 4.160 NL 52G 69 52G C37 C39 C 0 1 N N S 2.073 -21.521 11.695 -2.952 -2.237 4.579 C37 52G 70 52G C38 C40 C 0 1 N N N 1.075 -20.575 12.357 -3.085 -2.157 6.101 C38 52G 71 52G CD C41 C 0 1 N N N 1.760 -19.219 12.527 -1.858 -2.796 6.755 CD 52G 72 52G C98 C42 C 0 1 N N N 0.667 -21.145 13.730 -3.183 -0.690 6.527 C98 52G 73 52G OH3 O19 O 0 1 N N N -0.122 -20.428 11.530 -4.262 -2.853 6.514 OH3 52G 74 52G C40 C43 C 0 1 N N N 1.410 -22.894 11.713 -4.134 -1.560 3.935 C40 52G 75 52G O40 O20 O 0 1 N N N 0.582 -23.189 10.851 -3.985 -0.510 3.346 O40 52G 76 52G NM N14 N 0 1 N N N 1.741 -23.712 12.729 -5.357 -2.120 4.013 NM 52G 77 52G C41 C44 C 0 1 N N N 1.133 -25.076 12.835 -6.485 -1.521 3.296 C41 52G 78 52G C42 C45 C 0 1 N N N 1.226 -25.652 14.270 -7.748 -2.345 3.550 C42 52G 79 52G C43 C46 C 0 1 N N N -0.127 -25.690 15.064 -8.908 -1.729 2.812 C43 52G 80 52G NN N15 N 0 1 N N N 0.011 -26.512 16.317 -8.840 -0.682 2.089 NN 52G 81 52G S43 S1 S 0 1 N N N -1.544 -26.407 14.270 -10.561 -2.356 2.816 S43 52G 82 52G C44 C47 C 0 1 N N N -1.696 -27.815 15.337 -11.245 -1.063 1.729 C44 52G 83 52G C45 C48 C 0 1 N N R -1.252 -27.225 16.630 -10.024 -0.181 1.426 C45 52G 84 52G C46 C49 C 0 1 Y N N -2.353 -26.334 17.234 -9.787 -0.163 -0.062 C46 52G 85 52G NO N16 N 0 1 Y N N -3.620 -26.673 17.417 -10.117 0.803 -0.845 NO 52G 86 52G S46 S2 S 0 1 Y N N -2.143 -24.764 17.765 -9.035 -1.418 -0.943 S46 52G 87 52G C47 C50 C 0 1 Y N N -3.654 -24.541 18.261 -9.214 -0.547 -2.403 C47 52G 88 52G C48 C51 C 0 1 Y N N -4.318 -25.675 18.008 -9.821 0.631 -2.136 C48 52G 89 52G C49 C52 C 0 1 N N N -5.607 -25.747 18.326 -10.127 1.631 -3.173 C49 52G 90 52G O49 O21 O 0 1 N N N -6.173 -24.742 18.767 -9.832 1.415 -4.333 O49 52G 91 52G NP N17 N 0 1 N N N -6.189 -26.937 18.095 -10.734 2.786 -2.836 NP 52G 92 52G C50 C53 C 0 1 N N N -7.613 -27.222 18.363 -11.039 3.782 -3.867 C50 52G 93 52G C51 C54 C 0 1 N N N -7.709 -27.509 19.846 -11.722 4.990 -3.224 C51 52G 94 52G C52 C55 C 0 1 N N N -8.595 -28.766 19.992 -12.035 6.014 -4.285 C52 52G 95 52G N99 N18 N 0 1 N N N -8.084 -29.934 20.399 -11.721 5.784 -5.518 N99 52G 96 52G N53 N19 N 0 1 N N N -9.851 -28.674 19.645 -12.652 7.188 -3.942 N53 52G 97 52G H1 H1 H 0 1 N N N 11.115 -16.215 9.618 4.806 10.352 1.461 H1 52G 98 52G H2 H2 H 0 1 N N N 9.812 -17.064 11.791 2.846 8.057 1.016 H2 52G 99 52G H3 H3 H 0 1 N N N 9.211 -15.497 11.149 3.539 9.118 -0.233 H3 52G 100 52G H4 H4 H 0 1 N N N 7.149 -14.566 13.038 5.875 7.360 -1.892 H4 52G 101 52G H5 H5 H 0 1 N N N 8.743 -15.026 12.349 4.210 7.990 -1.923 H5 52G 102 52G H6 H6 H 0 1 N N N 6.112 -16.491 11.836 3.595 6.300 -0.165 H6 52G 103 52G H7 H7 H 0 1 N N N 9.453 -9.081 6.382 -1.934 -0.515 -2.595 H7 52G 104 52G H8 H8 H 0 1 N N N 8.767 -9.098 4.791 -1.947 -1.309 -4.076 H8 52G 105 52G H9 H9 H 0 1 N N N 8.724 -13.431 5.344 0.584 -4.081 -1.869 H9 52G 106 52G H10 H10 H 0 1 N N N 11.054 -13.232 4.734 2.273 -2.496 -2.711 H10 52G 107 52G H11 H11 H 0 1 N N N 11.606 -12.774 2.507 3.197 -2.936 -4.869 H11 52G 108 52G H12 H12 H 0 1 N N N 8.054 -12.819 2.452 0.705 -5.278 -4.677 H12 52G 109 52G H13 H13 H 0 1 N N N 6.460 -13.818 4.607 -0.841 -6.794 -3.670 H13 52G 110 52G H14 H14 H 0 1 N N N 7.877 -15.522 3.843 1.562 -6.426 -1.981 H14 52G 111 52G H15 H15 H 0 1 N N N 6.048 -15.295 2.374 0.598 -8.070 -3.605 H15 52G 112 52G H16 H16 H 0 1 N N N 6.971 -14.261 1.231 1.794 -7.541 -4.812 H16 52G 113 52G H17 H17 H 0 1 N N N 6.800 -16.472 0.505 2.611 -9.409 -3.622 H17 52G 114 52G H18 H18 H 0 1 N N N 11.384 -15.057 3.074 4.183 -4.092 -2.919 H18 52G 115 52G H19 H19 H 0 1 N N N 10.714 -16.900 3.091 4.008 -4.327 0.529 H19 52G 116 52G H20 H20 H 0 1 N N N 12.518 -17.002 4.603 6.174 -5.198 -0.259 H20 52G 117 52G H21 H21 H 0 1 N N N 12.181 -17.569 6.863 5.402 -7.389 -0.655 H21 52G 118 52G H22 H22 H 0 1 N N N 12.492 -19.364 5.495 4.756 -5.527 -2.944 H22 52G 119 52G H23 H23 H 0 1 N N N 12.313 -20.233 3.316 6.949 -6.240 -3.568 H23 52G 120 52G H24 H24 H 0 1 N N N 10.090 -19.443 6.066 6.337 -3.807 -3.737 H24 52G 121 52G H25 H25 H 0 1 N N N 9.639 -21.680 5.067 8.168 -4.302 -2.139 H25 52G 122 52G H26 H26 H 0 1 N N N 10.915 -21.392 3.836 7.739 -2.575 -2.104 H26 52G 123 52G H27 H27 H 0 1 N N N 11.358 -21.548 5.570 7.179 -3.657 -0.807 H27 52G 124 52G H28 H28 H 0 1 N N N 8.442 -17.498 3.527 5.654 -2.711 -0.342 H28 52G 125 52G H29 H29 H 0 1 N N N 7.208 -18.981 4.697 5.312 -0.576 -0.608 H29 52G 126 52G H31 H31 H 0 1 N N N 7.195 -20.375 9.829 2.117 0.735 -4.671 H31 52G 127 52G H32 H32 H 0 1 N N N 7.181 -22.198 8.039 4.632 1.007 -5.043 H32 52G 128 52G H33 H33 H 0 1 N N N 7.273 -21.230 5.680 5.975 0.304 -2.943 H33 52G 129 52G H34 H34 H 0 1 N N N 6.258 -16.730 4.796 2.448 0.302 -0.023 H34 52G 130 52G H35 H35 H 0 1 N N N 6.446 -17.067 7.750 3.466 2.387 -0.085 H35 52G 131 52G H36 H36 H 0 1 N N N 7.112 -11.989 6.981 8.179 2.137 1.906 H36 52G 132 52G H37 H37 H 0 1 N N N 5.535 -12.764 6.609 7.891 1.464 0.284 H37 52G 133 52G H38 H38 H 0 1 N N N 5.622 -11.440 7.820 9.209 2.632 0.542 H38 52G 134 52G H39 H39 H 0 1 N N N 6.605 -11.424 11.031 9.679 4.379 0.858 H39 52G 135 52G H40 H40 H 0 1 N N N 7.162 -11.087 9.533 9.364 6.010 0.607 H40 52G 136 52G H41 H41 H 0 1 N N N 7.482 -18.159 14.641 4.382 5.439 -4.618 H41 52G 137 52G H42 H42 H 0 1 N N N 6.467 -17.561 13.372 5.049 6.957 -4.351 H42 52G 138 52G H43 H43 H 0 1 N N N 7.637 -17.322 9.995 5.708 8.269 0.342 H43 52G 139 52G H45 H45 H 0 1 N N N 9.293 -15.696 8.304 3.605 8.467 3.384 H45 52G 140 52G H46 H46 H 0 1 N N N 9.998 -17.033 7.686 5.213 8.554 2.970 H46 52G 141 52G H48 H48 H 0 1 N N N 10.462 -19.820 11.142 1.647 12.058 1.232 H48 52G 142 52G H49 H49 H 0 1 N N N 9.924 -18.273 11.704 3.034 11.697 0.355 H49 52G 143 52G H50 H50 H 0 1 N N N 4.416 -17.693 7.553 2.309 -1.702 1.437 H50 52G 144 52G H51 H51 H 0 1 N N N 2.621 -19.360 5.791 3.420 -1.031 4.053 H51 52G 145 52G H52 H52 H 0 1 N N N 0.738 -18.122 7.098 4.416 -3.316 4.338 H52 52G 146 52G H53 H53 H 0 1 N N N 1.991 -16.879 7.430 4.108 -3.632 2.614 H53 52G 147 52G H54 H54 H 0 1 N N N 0.294 -17.085 5.153 5.527 -1.692 2.004 H54 52G 148 52G H55 H55 H 0 1 N N N 1.654 -15.941 5.412 5.835 -1.375 3.729 H55 52G 149 52G H56 H56 H 0 1 N N N 3.009 -17.916 4.757 7.554 -2.714 2.749 H56 52G 150 52G H57 H57 H 0 1 N N N 2.492 -18.923 8.823 1.693 -3.402 3.212 H57 52G 151 52G H58 H58 H 0 1 N N N 1.153 -20.839 8.653 2.221 -2.230 5.815 H58 52G 152 52G H59 H59 H 0 1 N N N 4.613 -20.127 8.114 0.618 -1.216 2.707 H59 52G 153 52G H60 H60 H 0 1 N N N 4.370 -22.498 7.393 1.938 0.101 4.385 H60 52G 154 52G H61 H61 H 0 1 N N N 2.591 -22.278 7.276 0.185 0.384 4.514 H61 52G 155 52G H62 H62 H 0 1 N N N 3.683 -21.368 6.178 1.004 -0.678 5.685 H62 52G 156 52G H63 H63 H 0 1 N N N 1.553 -20.676 9.788 -1.741 -0.641 3.877 H63 52G 157 52G H64 H64 H 0 1 N N N 3.012 -21.544 12.267 -2.921 -3.283 4.272 H64 52G 158 52G H65 H65 H 0 1 N N N 1.064 -18.513 13.003 -0.957 -2.293 6.406 H65 52G 159 52G H66 H66 H 0 1 N N N 2.653 -19.336 13.159 -1.932 -2.701 7.838 H66 52G 160 52G H67 H67 H 0 1 N N N 2.057 -18.832 11.541 -1.812 -3.852 6.486 H67 52G 161 52G H68 H68 H 0 1 N N N -0.053 -20.466 14.210 -4.057 -0.235 6.062 H68 52G 162 52G H69 H69 H 0 1 N N N 0.203 -22.133 13.594 -3.278 -0.633 7.612 H69 52G 163 52G H70 H70 H 0 1 N N N 1.559 -21.243 14.366 -2.285 -0.159 6.212 H70 52G 164 52G H71 H71 H 0 1 N N N -0.283 -21.237 11.058 -4.269 -3.790 6.277 H71 52G 165 52G H72 H72 H 0 1 N N N 2.398 -23.407 13.418 -5.491 -2.920 4.545 H72 52G 166 52G H73 H73 H 0 1 N N N 0.073 -25.014 12.547 -6.639 -0.501 3.648 H73 52G 167 52G H74 H74 H 0 1 N N N 1.661 -25.753 12.147 -6.269 -1.507 2.227 H74 52G 168 52G H75 H75 H 0 1 N N N 1.608 -26.681 14.199 -7.594 -3.365 3.198 H75 52G 169 52G H76 H76 H 0 1 N N N 1.937 -25.035 14.839 -7.964 -2.359 4.619 H76 52G 170 52G H80 H80 H 0 1 N N N -2.734 -28.174 15.390 -11.638 -1.501 0.811 H80 52G 171 52G H81 H81 H 0 1 N N N -1.039 -28.638 15.019 -12.016 -0.494 2.247 H81 52G 172 52G H82 H82 H 0 1 N N N -1.038 -28.038 17.339 -10.221 0.836 1.767 H82 52G 173 52G H86 H86 H 0 1 N N N -4.057 -23.647 18.713 -8.891 -0.882 -3.377 H86 52G 174 52G H88 H88 H 0 1 N N N -5.624 -27.672 17.720 -10.970 2.959 -1.911 H88 52G 175 52G H89 H89 H 0 1 N N N -8.233 -26.352 18.101 -10.114 4.100 -4.349 H89 52G 176 52G H90 H90 H 0 1 N N N -7.944 -28.096 17.782 -11.703 3.342 -4.611 H90 52G 177 52G H91 H91 H 0 1 N N N -6.709 -27.699 20.262 -12.646 4.671 -2.743 H91 52G 178 52G H92 H92 H 0 1 N N N -8.168 -26.657 20.369 -11.057 5.429 -2.480 H92 52G 179 52G H93 H93 H 0 1 N N N -8.767 -30.664 20.394 -11.922 6.443 -6.201 H93 52G 180 52G H94 H94 H 0 1 N N N -10.440 -29.481 19.682 -12.887 7.361 -3.017 H94 52G 181 52G H95 H95 H 0 1 N N N -10.223 -27.797 19.342 -12.853 7.847 -4.625 H95 52G 182 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 52G O1 C1 DOUB N N 1 52G C1 C2 SING N N 2 52G C1 NA SING N N 3 52G C2 C3 SING N N 4 52G C2 NB SING N N 5 52G C3 NC SING N N 6 52G C4 O4 DOUB N N 7 52G C4 C5 SING N N 8 52G C4 ND SING N N 9 52G C5 C6 SING N N 10 52G C6 C7 SING N N 11 52G C6 NC SING N N 12 52G C7 NG DOUB Y N 13 52G C7 NE SING Y N 14 52G C8 C9 SING Y N 15 52G C8 NF SING N N 16 52G C8 NE DOUB Y N 17 52G C9 C10 DOUB Y N 18 52G C9 CA SING N N 19 52G C10 C12 SING N N 20 52G C10 NG SING Y N 21 52G O12 C12 DOUB N N 22 52G NQ C70 SING N N 23 52G C70 O70 DOUB N N 24 52G C70 O68 SING N N 25 52G O68 C68 SING N N 26 52G C68 C69 SING N N 27 52G C68 C67 SING N N 28 52G C69 O69 SING N N 29 52G C69 C64 SING N N 30 52G C67 O67 SING N N 31 52G C67 C65 SING N N 32 52G C65 C66 SING N N 33 52G C65 O64 SING N N 34 52G C66 O66 SING N N 35 52G O64 C64 SING N N 36 52G C64 O56 SING N N 37 52G O56 C57 SING N N 38 52G C57 C58 SING N N 39 52G C57 C63 SING N N 40 52G C58 O58 SING N N 41 52G C58 C59 SING N N 42 52G C59 O59 SING N N 43 52G C59 C60 SING N N 44 52G C60 C61 SING N N 45 52G C60 O62 SING N N 46 52G O62 C63 SING N N 47 52G C63 OH1 SING N N 48 52G OH1 C14 SING N N 49 52G C14 C27 SING N N 50 52G C14 C13 SING N N 51 52G C27 NJ SING Y N 52 52G C27 C28 DOUB Y N 53 52G NJ C29 DOUB Y N 54 52G C29 NI SING Y N 55 52G NI C28 SING Y N 56 52G C13 NH SING N N 57 52G C13 C30 SING N N 58 52G NH C12 SING N N 59 52G C30 O30 DOUB N N 60 52G C30 NK SING N N 61 52G NK C31 SING N N 62 52G C31 CB SING N N 63 52G C31 C33 SING N N 64 52G CB C96 SING N N 65 52G C96 O97 SING N N 66 52G C33 OH2 SING N N 67 52G C33 C34 SING N N 68 52G C34 CC SING N N 69 52G C34 C36 SING N N 70 52G C36 O36 DOUB N N 71 52G C36 NL SING N N 72 52G NL C37 SING N N 73 52G C37 C38 SING N N 74 52G C37 C40 SING N N 75 52G C38 CD SING N N 76 52G C38 C98 SING N N 77 52G C38 OH3 SING N N 78 52G C40 O40 DOUB N N 79 52G C40 NM SING N N 80 52G NM C41 SING N N 81 52G C41 C42 SING N N 82 52G C42 C43 SING N N 83 52G C43 NN DOUB N N 84 52G C43 S43 SING N N 85 52G NN C45 SING N N 86 52G S43 C44 SING N N 87 52G C44 C45 SING N N 88 52G C45 C46 SING N N 89 52G C46 NO DOUB Y N 90 52G C46 S46 SING Y N 91 52G NO C48 SING Y N 92 52G S46 C47 SING Y N 93 52G C47 C48 DOUB Y N 94 52G C48 C49 SING N N 95 52G C49 O49 DOUB N N 96 52G C49 NP SING N N 97 52G NP C50 SING N N 98 52G C50 C51 SING N N 99 52G C51 C52 SING N N 100 52G C52 N99 DOUB N N 101 52G C52 N53 SING N N 102 52G C2 H1 SING N N 103 52G C3 H2 SING N N 104 52G C3 H3 SING N N 105 52G C5 H4 SING N N 106 52G C5 H5 SING N N 107 52G C6 H6 SING N N 108 52G NQ H7 SING N N 109 52G NQ H8 SING N N 110 52G C68 H9 SING N N 111 52G C69 H10 SING N N 112 52G O69 H11 SING N N 113 52G C67 H12 SING N N 114 52G O67 H13 SING N N 115 52G C65 H14 SING N N 116 52G C66 H15 SING N N 117 52G C66 H16 SING N N 118 52G O66 H17 SING N N 119 52G C64 H18 SING N N 120 52G C57 H19 SING N N 121 52G C58 H20 SING N N 122 52G O58 H21 SING N N 123 52G C59 H22 SING N N 124 52G O59 H23 SING N N 125 52G C60 H24 SING N N 126 52G C61 H25 SING N N 127 52G C61 H26 SING N N 128 52G C61 H27 SING N N 129 52G C63 H28 SING N N 130 52G C14 H29 SING N N 131 52G C29 H31 SING N N 132 52G NI H32 SING N N 133 52G C28 H33 SING N N 134 52G C13 H34 SING N N 135 52G NH H35 SING N N 136 52G CA H36 SING N N 137 52G CA H37 SING N N 138 52G CA H38 SING N N 139 52G NF H39 SING N N 140 52G NF H40 SING N N 141 52G ND H41 SING N N 142 52G ND H42 SING N N 143 52G NC H43 SING N N 144 52G NB H45 SING N N 145 52G NB H46 SING N N 146 52G NA H48 SING N N 147 52G NA H49 SING N N 148 52G NK H50 SING N N 149 52G C31 H51 SING N N 150 52G CB H52 SING N N 151 52G CB H53 SING N N 152 52G C96 H54 SING N N 153 52G C96 H55 SING N N 154 52G O97 H56 SING N N 155 52G C33 H57 SING N N 156 52G OH2 H58 SING N N 157 52G C34 H59 SING N N 158 52G CC H60 SING N N 159 52G CC H61 SING N N 160 52G CC H62 SING N N 161 52G NL H63 SING N N 162 52G C37 H64 SING N N 163 52G CD H65 SING N N 164 52G CD H66 SING N N 165 52G CD H67 SING N N 166 52G C98 H68 SING N N 167 52G C98 H69 SING N N 168 52G C98 H70 SING N N 169 52G OH3 H71 SING N N 170 52G NM H72 SING N N 171 52G C41 H73 SING N N 172 52G C41 H74 SING N N 173 52G C42 H75 SING N N 174 52G C42 H76 SING N N 175 52G C44 H80 SING N N 176 52G C44 H81 SING N N 177 52G C45 H82 SING N N 178 52G C47 H86 SING N N 179 52G NP H88 SING N N 180 52G C50 H89 SING N N 181 52G C50 H90 SING N N 182 52G C51 H91 SING N N 183 52G C51 H92 SING N N 184 52G N99 H93 SING N N 185 52G N53 H94 SING N N 186 52G N53 H95 SING N N 187 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 52G SMILES ACDLabs 12.01 "O=C(C(CNC(CC(=O)N)c1nc(c(c(N)n1)C)C(=O)NC(C(OC3C(OC2C(C(OC(N)=O)C(O)C(CO)O2)O)C(O)C(O)C(C)O3)c4ncnc4)C(=O)NC(CCO)C(O)C(C)C(=O)NC(C(C)(C)O)C(=O)NCCC5=NC(CS5)c6nc(cs6)C(=O)NCC\C(=N)N)N)N" 52G InChI InChI 1.03 "InChI=1S/C55H85N19O21S2/c1-19-32(71-45(74-43(19)60)24(12-30(59)77)66-13-22(56)44(61)83)48(86)72-33(39(25-14-63-18-67-25)93-53-41(37(81)35(79)21(3)91-53)94-52-38(82)40(95-54(62)89)36(80)28(15-76)92-52)49(87)69-23(8-11-75)34(78)20(2)46(84)73-42(55(4,5)90)50(88)65-10-7-31-68-27(17-96-31)51-70-26(16-97-51)47(85)64-9-6-29(57)58/h14,16,18,20-24,27-28,33-42,52-53,66,75-76,78-82,90H,6-13,15,17,56H2,1-5H3,(H3,57,58)(H2,59,77)(H2,61,83)(H2,62,89)(H,63,67)(H,64,85)(H,65,88)(H,69,87)(H,72,86)(H,73,84)(H2,60,71,74)/t20-,21-,22-,23+,24-,27+,28+,33-,34-,35+,36+,37-,38-,39-,40-,41-,42+,52+,53-/m0/s1" 52G InChIKey InChI 1.03 UJKRUPHWCPAJIL-CPLCKGKLSA-N 52G SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O[C@H]([C@H](NC(=O)c2nc(nc(N)c2C)[C@H](CC(N)=O)NC[C@H](N)C(N)=O)C(=O)N[C@H](CCO)[C@@H](O)[C@H](C)C(=O)N[C@H](C(=O)NCCC3=N[C@H](CS3)c4scc(n4)C(=O)NCCC(N)=N)C(C)(C)O)c5c[nH]cn5)[C@@H](O[C@H]6O[C@H](CO)[C@@H](O)[C@H](OC(N)=O)[C@@H]6O)[C@@H](O)[C@@H]1O" 52G SMILES CACTVS 3.385 "C[CH]1O[CH](O[CH]([CH](NC(=O)c2nc(nc(N)c2C)[CH](CC(N)=O)NC[CH](N)C(N)=O)C(=O)N[CH](CCO)[CH](O)[CH](C)C(=O)N[CH](C(=O)NCCC3=N[CH](CS3)c4scc(n4)C(=O)NCCC(N)=N)C(C)(C)O)c5c[nH]cn5)[CH](O[CH]6O[CH](CO)[CH](O)[CH](OC(N)=O)[CH]6O)[CH](O)[CH]1O" 52G SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C(\CCNC(=O)c1csc(n1)[C@H]2CSC(=N2)CCNC(=O)[C@H](C(C)(C)O)NC(=O)[C@@H](C)[C@@H]([C@@H](CCO)NC(=O)[C@H]([C@H](c3c[nH]cn3)O[C@H]4[C@H]([C@H]([C@@H]([C@@H](O4)C)O)O)O[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)OC(=O)N)O)NC(=O)c6c(c(nc(n6)[C@H](CC(=O)N)NC[C@@H](C(=O)N)N)N)C)O)/N" 52G SMILES "OpenEye OEToolkits" 1.9.2 "Cc1c(nc(nc1N)C(CC(=O)N)NCC(C(=O)N)N)C(=O)NC(C(c2c[nH]cn2)OC3C(C(C(C(O3)C)O)O)OC4C(C(C(C(O4)CO)O)OC(=O)N)O)C(=O)NC(CCO)C(C(C)C(=O)NC(C(=O)NCCC5=NC(CS5)c6nc(cs6)C(=O)NCCC(=N)N)C(C)(C)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 52G "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S,4S,5R,6R)-2-{[(2R,3S,4S,5S,6S)-2-{[(1R,2S)-2-[({6-amino-2-[(1S)-3-amino-1-{[(2S)-2,3-diamino-3-oxopropyl]amino}-3-oxopropyl]-5-methylpyrimidin-4-yl}carbonyl)amino]-3-{[(3R,4S,5S)-6-{[(2S)-1-({2-[(4'R)-4-{[(3E)-3-amino-3-iminopropyl]carbamoyl}-4',5'-dihydro-2,4'-bi-1,3-thiazol-2'-yl]ethyl}amino)-3-hydroxy-3-methyl-1-oxobutan-2-yl]amino}-1,4-dihydroxy-5-methyl-6-oxohexan-3-yl]amino}-1-(1H-imidazol-4-yl)-3-oxopropyl]oxy}-4,5-dihydroxy-6-methyltetrahydro-2H-pyran-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl carbamate (non-preferred name)" 52G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R,3S,4S,5R,6R)-2-[(2R,3S,4S,5S,6S)-2-[(1R,2S)-2-[[6-azanyl-2-[(1S)-3-azanyl-1-[[(2S)-2,3-bis(azanyl)-3-oxidanylidene-propyl]amino]-3-oxidanylidene-propyl]-5-methyl-pyrimidin-4-yl]carbonylamino]-3-[[(3R,4S,5S)-6-[[(2S)-1-[2-[(4R)-4-[4-[(3-azanyl-3-azanylidene-propyl)carbamoyl]-1,3-thiazol-2-yl]-4,5-dihydro-1,3-thiazol-2-yl]ethylamino]-3-methyl-3-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-5-methyl-1,4-bis(oxidanyl)-6-oxidanylidene-hexan-3-yl]amino]-1-(1H-imidazol-4-yl)-3-oxidanylidene-propoxy]-6-methyl-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 52G "Create component" 2015-07-15 RCSB 52G "Initial release" 2015-07-22 RCSB 52G "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 52G _pdbx_chem_comp_synonyms.name "(2R,3S,4S,5R,6R)-2-{[(2R,3S,4S,5S,6S)-2-{[(1R,2S)-2-[({6-amino-2-[(1S)-3-amino-1-{[(2S)-2,3-diamino-3-oxopropyl]amino}-3-oxopropyl]-5-methylpyrimidin-4-yl}carbonyl)amino]-3-{[(3R,4S,5S)-6-{[(2S)-1-({2-[(4'R)-4-{[(3E)-3-amino-3-iminopropyl]carbamoyl}-4',5'-dihydro-2,4'-bi-1,3-thiazol-2'-yl]ethyl}amino)-3-hydroxy-3-methyl-1-oxobutan-2-yl]amino}-1,4-dihydroxy-5-methyl-6-oxohexan-3-yl]amino}-1-(1H-imidazol-4-yl)-3-oxopropyl]oxy}-4,5-dihydroxy-6-methyltetrahydro-2H-pyran-3-yl]oxy}-3,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl carbamate (non-preferred name)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##