data_52O # _chem_comp.id 52O _chem_comp.name "pivalyl-coenzyme A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H44 N7 O17 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-16 _chem_comp.pdbx_modified_date 2015-09-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 851.651 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 52O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5CJW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 52O O3 O1 O 0 1 N N N -208.012 -104.914 -36.615 -7.861 2.648 1.004 O3 52O 1 52O C4 C1 C 0 1 N N R -210.059 -104.819 -35.319 -5.459 2.450 0.600 C4 52O 2 52O C5 C2 C 0 1 N N N -208.426 -104.988 -32.167 -5.156 -0.884 -0.845 C5 52O 3 52O O4 O2 O 0 1 N N N -209.466 -104.067 -31.781 -3.939 -1.469 -0.378 O4 52O 4 52O C6 C3 C 0 1 Y N N -212.004 -103.314 -35.955 -5.008 4.934 0.779 C6 52O 5 52O N1 N1 N 0 1 Y N N -211.202 -103.955 -35.042 -4.881 3.720 0.153 N1 52O 6 52O C7 C4 C 0 1 Y N N -211.714 -103.638 -33.811 -4.119 3.911 -0.961 C7 52O 7 52O C8 C5 C 0 1 Y N N -212.965 -102.649 -35.210 -4.292 5.852 -0.008 C8 52O 8 52O N2 N2 N 0 1 Y N N -212.768 -102.860 -33.854 -3.774 5.163 -1.053 N2 52O 9 52O C9 C6 C 0 1 N N N -209.391 -100.640 -26.025 2.113 -5.214 1.772 C9 52O 10 52O O5 O3 O 0 1 N N N -206.608 -101.692 -35.975 -10.130 -1.328 0.985 O5 52O 11 52O C10 C7 C 0 1 N N R -208.742 -100.692 -24.619 3.400 -6.038 1.697 C10 52O 12 52O O6 O4 O 0 1 N N N -205.793 -103.838 -36.936 -8.656 -1.768 -1.016 O6 52O 13 52O C11 C8 C 0 1 N N N -209.544 -102.041 -26.615 1.598 -4.942 0.357 C11 52O 14 52O C12 C9 C 0 1 Y N N -213.928 -101.913 -35.924 -4.254 7.194 0.407 C12 52O 15 52O N3 N3 N 0 1 Y N N -211.891 -103.326 -37.288 -5.623 5.365 1.875 N3 52O 16 52O C13 C10 C 0 1 N N N -208.517 -99.807 -26.969 1.055 -5.992 2.558 C13 52O 17 52O O7 O5 O 0 1 N N N -210.748 -103.281 -29.691 -1.784 -2.975 -0.424 O7 52O 18 52O C14 C11 C 0 1 N N N -210.779 -99.997 -25.929 2.397 -3.886 2.475 C14 52O 19 52O O8 O6 O 0 1 N N N -210.745 -102.121 -27.396 0.396 -4.173 0.427 O8 52O 20 52O C15 C12 C 0 1 Y N N -212.853 -102.592 -37.855 -5.564 6.633 2.223 C15 52O 21 52O N4 N4 N 0 1 Y N N -213.839 -101.904 -37.272 -4.896 7.531 1.521 N4 52O 22 52O O9 O7 O 0 1 N N N -204.453 -102.687 -35.141 -10.124 0.284 -1.092 O9 52O 23 52O P1 P1 P 0 1 N N N -205.818 -102.968 -35.674 -9.221 -0.687 -0.179 P1 52O 24 52O O2 O8 O 0 1 N N N -206.677 -103.790 -34.582 -8.022 0.161 0.482 O2 52O 25 52O C1 C13 C 0 1 N N S -208.113 -103.834 -34.437 -6.982 0.768 -0.287 C1 52O 26 52O C2 C14 C 0 1 N N R -208.801 -104.076 -35.777 -6.884 2.277 0.030 C2 52O 27 52O N5 N5 N 0 1 N N N -214.923 -101.233 -35.346 -3.564 8.143 -0.326 N5 52O 28 52O O1 O9 O 0 1 N N N -209.726 -105.515 -34.131 -4.709 1.339 0.062 O1 52O 29 52O C3 C15 C 0 1 N N R -208.416 -105.116 -33.670 -5.604 0.207 0.130 C3 52O 30 52O P2 P2 P 0 1 N N N -209.354 -103.185 -30.457 -3.180 -2.655 -1.160 P2 52O 31 52O O12 O10 O 0 1 N N N -209.022 -101.766 -30.719 -2.917 -2.237 -2.555 O12 52O 32 52O O10 O11 O 0 1 N N N -208.292 -103.808 -29.551 -4.102 -3.974 -1.160 O10 52O 33 52O P3 P3 P 0 1 N N N -211.098 -103.478 -28.149 -0.422 -3.704 -0.878 P3 52O 34 52O O14 O12 O 0 1 N N N -210.380 -104.661 -27.615 0.476 -2.678 -1.734 O14 52O 35 52O O13 O13 O 0 1 N N N -212.601 -103.676 -28.036 -0.748 -4.885 -1.708 O13 52O 36 52O O11 O14 O 0 1 N N N -208.324 -99.389 -24.256 3.109 -7.330 1.161 O11 52O 37 52O C16 C16 C 0 1 N N N -209.681 -101.238 -23.555 4.393 -5.337 0.805 C16 52O 38 52O O15 O15 O 0 1 N N N -210.017 -102.420 -23.570 4.698 -5.824 -0.263 O15 52O 39 52O N6 N6 N 0 1 N N N -210.085 -100.375 -22.626 4.942 -4.170 1.196 N6 52O 40 52O C17 C17 C 0 1 N N N -210.880 -100.768 -21.474 5.833 -3.440 0.289 C17 52O 41 52O C18 C18 C 0 1 N N N -210.393 -100.084 -20.221 6.315 -2.158 0.971 C18 52O 42 52O C19 C19 C 0 1 N N N -211.354 -100.227 -19.070 7.231 -1.408 0.039 C19 52O 43 52O O16 O16 O 0 1 N N N -212.400 -100.862 -19.177 7.474 -1.854 -1.062 O16 52O 44 52O N7 N7 N 0 1 N N N -210.994 -99.616 -17.948 7.780 -0.240 0.429 N7 52O 45 52O C20 C20 C 0 1 N N N -211.816 -99.587 -16.749 8.671 0.489 -0.477 C20 52O 46 52O C21 C21 C 0 1 N N N -211.175 -98.651 -15.745 9.153 1.771 0.205 C21 52O 47 52O S1 S1 S 0 1 N N N -212.060 -98.460 -14.176 10.253 2.673 -0.915 S1 52O 48 52O C22 C22 C 0 1 N N N -210.985 -97.362 -13.316 10.636 4.022 0.067 C22 52O 49 52O O17 O17 O 0 1 N N N -209.968 -96.937 -13.792 10.164 4.115 1.181 O17 52O 50 52O C23 C23 C 0 1 N N N -211.473 -97.013 -11.936 11.558 5.095 -0.452 C23 52O 51 52O C24 C24 C 0 1 N N N -210.375 -97.225 -10.922 12.920 4.480 -0.783 C24 52O 52 52O C25 C25 C 0 1 N N N -212.638 -97.886 -11.573 10.958 5.715 -1.716 C25 52O 53 52O C26 C26 C 0 1 N N N -211.905 -95.571 -11.909 11.733 6.178 0.614 C26 52O 54 52O H1 H1 H 0 1 N N N -207.159 -104.517 -36.748 -7.806 3.572 1.285 H1 52O 55 52O H2 H2 H 0 1 N N N -210.335 -105.539 -36.104 -5.476 2.404 1.689 H2 52O 56 52O H3 H3 H 0 1 N N N -208.618 -105.972 -31.714 -4.996 -0.448 -1.830 H3 52O 57 52O H4 H4 H 0 1 N N N -207.452 -104.610 -31.823 -5.927 -1.652 -0.908 H4 52O 58 52O H5 H5 H 0 1 N N N -211.287 -103.998 -32.887 -3.842 3.139 -1.662 H5 52O 59 52O H6 H6 H 0 1 N N N -206.912 -101.712 -36.875 -10.873 -1.854 0.659 H6 52O 60 52O H7 H7 H 0 1 N N N -207.867 -101.356 -24.677 3.822 -6.145 2.696 H7 52O 61 52O H8 H8 H 0 1 N N N -209.592 -102.776 -25.798 2.351 -4.388 -0.203 H8 52O 62 52O H9 H9 H 0 1 N N N -208.678 -102.262 -27.256 1.396 -5.889 -0.144 H9 52O 63 52O H10 H10 H 0 1 N N N -208.396 -98.793 -26.559 0.120 -5.433 2.560 H10 52O 64 52O H11 H11 H 0 1 N N N -207.530 -100.282 -27.069 0.897 -6.964 2.091 H11 52O 65 52O H12 H12 H 0 1 N N N -208.997 -99.748 -27.957 1.396 -6.133 3.584 H12 52O 66 52O H13 H13 H 0 1 N N N -211.412 -100.590 -25.253 3.063 -3.283 1.858 H13 52O 67 52O H14 H14 H 0 1 N N N -210.683 -98.973 -25.538 1.461 -3.349 2.631 H14 52O 68 52O H15 H15 H 0 1 N N N -211.238 -99.966 -26.928 2.870 -4.079 3.439 H15 52O 69 52O H16 H16 H 0 1 N N N -212.830 -102.549 -38.934 -6.076 6.951 3.120 H16 52O 70 52O H17 H17 H 0 1 N N N -203.804 -103.108 -35.693 -10.527 1.017 -0.607 H17 52O 71 52O H18 H18 H 0 1 N N N -208.520 -102.949 -33.926 -7.153 0.609 -1.351 H18 52O 72 52O H19 H19 H 0 1 N N N -209.063 -103.124 -36.261 -7.007 2.869 -0.877 H19 52O 73 52O H20 H20 H 0 1 N N N -215.482 -100.796 -36.051 -3.099 7.885 -1.138 H20 52O 74 52O H21 H21 H 0 1 N N N -215.490 -101.861 -34.813 -3.546 9.066 -0.030 H21 52O 75 52O H22 H22 H 0 1 N N N -207.676 -105.878 -33.955 -5.644 -0.184 1.146 H22 52O 76 52O H23 H23 H 0 1 N N N -207.634 -103.157 -29.340 -4.315 -4.305 -0.276 H23 52O 77 52O H24 H24 H 0 1 N N N -211.010 -105.303 -27.310 0.727 -1.878 -1.251 H24 52O 78 52O H25 H25 H 0 1 N N N -207.925 -99.413 -23.394 2.730 -7.311 0.272 H25 52O 79 52O H26 H26 H 0 1 N N N -209.830 -99.413 -22.725 4.748 -3.813 2.076 H26 52O 80 52O H27 H27 H 0 1 N N N -211.930 -100.491 -21.650 6.691 -4.065 0.042 H27 52O 81 52O H28 H28 H 0 1 N N N -210.806 -101.857 -21.341 5.293 -3.185 -0.623 H28 52O 82 52O H29 H29 H 0 1 N N N -209.428 -100.526 -19.931 5.457 -1.533 1.219 H29 52O 83 52O H30 H30 H 0 1 N N N -210.257 -99.014 -20.435 6.855 -2.413 1.884 H30 52O 84 52O H31 H31 H 0 1 N N N -210.109 -99.150 -17.926 7.586 0.117 1.310 H31 52O 85 52O H32 H32 H 0 1 N N N -212.825 -99.227 -17.000 9.529 -0.135 -0.725 H32 52O 86 52O H33 H33 H 0 1 N N N -211.884 -100.598 -16.322 8.131 0.744 -1.389 H33 52O 87 52O H34 H34 H 0 1 N N N -210.168 -99.033 -15.521 8.295 2.396 0.453 H34 52O 88 52O H35 H35 H 0 1 N N N -211.095 -97.658 -16.211 9.693 1.517 1.117 H35 52O 89 52O H36 H36 H 0 1 N N N -210.746 -96.966 -9.919 12.795 3.709 -1.543 H36 52O 90 52O H37 H37 H 0 1 N N N -210.062 -98.279 -10.936 13.587 5.256 -1.159 H37 52O 91 52O H38 H38 H 0 1 N N N -209.517 -96.584 -11.172 13.347 4.038 0.117 H38 52O 92 52O H39 H39 H 0 1 N N N -212.991 -97.627 -10.564 9.988 6.153 -1.480 H39 52O 93 52O H40 H40 H 0 1 N N N -213.452 -97.731 -12.297 11.625 6.491 -2.092 H40 52O 94 52O H41 H41 H 0 1 N N N -212.326 -98.941 -11.593 10.834 4.944 -2.476 H41 52O 95 52O H42 H42 H 0 1 N N N -212.262 -95.314 -10.901 12.160 5.736 1.514 H42 52O 96 52O H43 H43 H 0 1 N N N -211.052 -94.928 -12.171 12.400 6.954 0.238 H43 52O 97 52O H44 H44 H 0 1 N N N -212.716 -95.418 -12.636 10.763 6.616 0.850 H44 52O 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 52O C15 N3 DOUB Y N 1 52O C15 N4 SING Y N 2 52O N3 C6 SING Y N 3 52O N4 C12 DOUB Y N 4 52O O6 P1 DOUB N N 5 52O O3 C2 SING N N 6 52O O5 P1 SING N N 7 52O C6 C8 DOUB Y N 8 52O C6 N1 SING Y N 9 52O C12 N5 SING N N 10 52O C12 C8 SING Y N 11 52O C2 C4 SING N N 12 52O C2 C1 SING N N 13 52O P1 O9 SING N N 14 52O P1 O2 SING N N 15 52O C4 N1 SING N N 16 52O C4 O1 SING N N 17 52O C8 N2 SING Y N 18 52O N1 C7 SING Y N 19 52O O2 C1 SING N N 20 52O C1 C3 SING N N 21 52O O1 C3 SING N N 22 52O N2 C7 DOUB Y N 23 52O C3 C5 SING N N 24 52O C5 O4 SING N N 25 52O O4 P2 SING N N 26 52O O12 P2 DOUB N N 27 52O P2 O7 SING N N 28 52O P2 O10 SING N N 29 52O O7 P3 SING N N 30 52O P3 O13 DOUB N N 31 52O P3 O14 SING N N 32 52O P3 O8 SING N N 33 52O O8 C11 SING N N 34 52O C13 C9 SING N N 35 52O C11 C9 SING N N 36 52O C9 C14 SING N N 37 52O C9 C10 SING N N 38 52O C10 O11 SING N N 39 52O C10 C16 SING N N 40 52O O15 C16 DOUB N N 41 52O C16 N6 SING N N 42 52O N6 C17 SING N N 43 52O C17 C18 SING N N 44 52O C18 C19 SING N N 45 52O O16 C19 DOUB N N 46 52O C19 N7 SING N N 47 52O N7 C20 SING N N 48 52O C20 C21 SING N N 49 52O C21 S1 SING N N 50 52O S1 C22 SING N N 51 52O O17 C22 DOUB N N 52 52O C22 C23 SING N N 53 52O C23 C26 SING N N 54 52O C23 C25 SING N N 55 52O C23 C24 SING N N 56 52O O3 H1 SING N N 57 52O C4 H2 SING N N 58 52O C5 H3 SING N N 59 52O C5 H4 SING N N 60 52O C7 H5 SING N N 61 52O O5 H6 SING N N 62 52O C10 H7 SING N N 63 52O C11 H8 SING N N 64 52O C11 H9 SING N N 65 52O C13 H10 SING N N 66 52O C13 H11 SING N N 67 52O C13 H12 SING N N 68 52O C14 H13 SING N N 69 52O C14 H14 SING N N 70 52O C14 H15 SING N N 71 52O C15 H16 SING N N 72 52O O9 H17 SING N N 73 52O C1 H18 SING N N 74 52O C2 H19 SING N N 75 52O N5 H20 SING N N 76 52O N5 H21 SING N N 77 52O C3 H22 SING N N 78 52O O10 H23 SING N N 79 52O O14 H24 SING N N 80 52O O11 H25 SING N N 81 52O N6 H26 SING N N 82 52O C17 H27 SING N N 83 52O C17 H28 SING N N 84 52O C18 H29 SING N N 85 52O C18 H30 SING N N 86 52O N7 H31 SING N N 87 52O C20 H32 SING N N 88 52O C20 H33 SING N N 89 52O C21 H34 SING N N 90 52O C21 H35 SING N N 91 52O C24 H36 SING N N 92 52O C24 H37 SING N N 93 52O C24 H38 SING N N 94 52O C25 H39 SING N N 95 52O C25 H40 SING N N 96 52O C25 H41 SING N N 97 52O C26 H42 SING N N 98 52O C26 H43 SING N N 99 52O C26 H44 SING N N 100 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 52O SMILES ACDLabs 12.01 "OC3C(n1c2c(nc1)c(N)ncn2)OC(COP(OP(OCC(C)(C(O)C(NCCC(NCCSC(C(C)(C)C)=O)=O)=O)C)(=O)O)(O)=O)C3OP(O)(=O)O" 52O InChI InChI 1.03 ;InChI=1S/C26H44N7O17P3S/c1-25(2,3)24(38)54-9-8-28-15(34)6-7-29-22(37)19(36)26(4,5)11-47-53(44,45)50-52(42,43)46-10-14-18(49-51(39,40)41)17(35)23(48-14)33-13-32-16-20(27)30-12-31-21(16)33/h12-14,17-19,23,35-36H,6-11H2,1-5H3,(H,28,34)(H,29,37)(H,42,43)(H,44,45)(H2,27,30,31)(H2,39,40,41)/t14-,17-,18-,19+,23-/m1/s1 ; 52O InChIKey InChI 1.03 FCMKBHDFOPWWQK-NDZSKPAWSA-N 52O SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 52O SMILES CACTVS 3.385 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 52O SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" 52O SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)(C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 52O "SYSTEMATIC NAME" ACDLabs 12.01 ;S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2,2-dimethylpropanethioate (non-preferred name) ; 52O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2,2-dimethylpropanethioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 52O "Create component" 2015-07-16 RCSB 52O "Initial release" 2015-09-09 RCSB #