data_52V # _chem_comp.id 52V _chem_comp.name "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-10-31 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.489 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 52V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3F0Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 52V C1 C1 C 0 1 Y N N -27.068 -10.288 40.474 5.055 -1.140 -0.392 C1 52V 1 52V C2 C2 C 0 1 N N N -34.284 -16.839 39.275 -2.403 3.138 2.746 C2 52V 2 52V C3 C3 C 0 1 Y N N -27.026 -7.971 40.756 6.245 0.752 -0.960 C3 52V 3 52V C6 C6 C 0 1 Y N N -28.106 -10.384 41.390 3.898 -0.347 -0.248 C6 52V 4 52V C12 C12 C 0 1 N N R -29.702 -14.086 42.253 0.338 -2.013 0.836 C12 52V 5 52V C13 C13 C 0 1 N N N -29.817 -14.298 43.757 0.483 -2.684 2.203 C13 52V 6 52V C14 C14 C 0 1 Y N N -31.103 -14.115 41.609 -0.717 -0.939 0.912 C14 52V 7 52V C15 C15 C 0 1 Y N N -31.435 -15.235 40.844 -0.559 0.121 1.785 C15 52V 8 52V C16 C16 C 0 1 Y N N -32.681 -15.340 40.233 -1.527 1.113 1.861 C16 52V 9 52V C17 C17 C 0 1 Y N N -33.611 -14.294 40.384 -2.655 1.043 1.060 C17 52V 10 52V C18 C18 C 0 1 Y N N -33.313 -13.145 41.152 -2.815 -0.025 0.181 C18 52V 11 52V C26 C26 C 0 1 N N N -36.013 -13.697 42.286 -4.691 -2.197 0.543 C26 52V 12 52V C20 C20 C 0 1 Y N N -35.565 -12.330 41.797 -4.928 -1.150 -0.515 C20 52V 13 52V C21 C21 C 0 1 Y N N -36.503 -11.298 41.908 -6.049 -1.221 -1.318 C21 52V 14 52V C22 C22 C 0 1 Y N N -36.206 -10.002 41.495 -6.268 -0.261 -2.289 C22 52V 15 52V C23 C23 C 0 1 Y N N -34.947 -9.752 40.970 -5.367 0.774 -2.462 C23 52V 16 52V C24 C24 C 0 1 Y N N -33.998 -10.778 40.862 -4.244 0.855 -1.664 C24 52V 17 52V C27 C27 C 0 1 N N N -32.656 -10.375 40.270 -3.263 1.983 -1.853 C27 52V 18 52V C25 C25 C 0 1 Y N N -34.276 -12.100 41.281 -4.021 -0.106 -0.680 C25 52V 19 52V C19 C19 C 0 1 Y N N -32.040 -13.072 41.764 -1.836 -1.014 0.107 C19 52V 20 52V O17 O17 O 0 1 N N N -32.909 -16.478 39.497 -1.367 2.153 2.721 O17 52V 21 52V C11 C11 C 0 1 N N N -29.122 -12.771 41.953 1.623 -1.412 0.445 C11 52V 22 52V C10 C10 C 0 1 N N N -28.662 -11.661 41.701 2.648 -0.932 0.133 C10 52V 23 52V C5 C5 C 0 1 Y N N -28.582 -9.217 41.983 4.005 1.024 -0.485 C5 52V 24 52V C8 C8 C 0 1 N N N -29.726 -9.261 42.994 2.801 1.919 -0.345 C8 52V 25 52V N4 N4 N 0 1 Y N N -28.031 -8.033 41.647 5.178 1.527 -0.834 N4 52V 26 52V N7 N7 N 0 1 N N N -26.483 -6.811 40.426 7.450 1.323 -1.327 N7 52V 27 52V N2 N2 N 0 1 Y N N -26.567 -9.077 40.176 6.193 -0.555 -0.746 N2 52V 28 52V N9 N9 N 0 1 N N N -26.562 -11.368 39.873 5.006 -2.503 -0.163 N9 52V 29 52V H2 H2 H 0 1 N N N -34.800 -16.931 40.242 -2.151 3.910 3.473 H2 52V 30 52V H2A H2A H 0 1 N N N -34.774 -16.061 38.671 -2.501 3.587 1.758 H2A 52V 31 52V H2B H2B H 0 1 N N N -34.329 -17.801 38.743 -3.345 2.667 3.027 H2B 52V 32 52V H12 H12 H 0 1 N N N -29.062 -14.888 41.856 0.045 -2.758 0.095 H12 52V 33 52V H13 H13 H 0 1 N N N -29.845 -15.376 43.975 -0.468 -3.129 2.493 H13 52V 34 52V H13A H13A H 0 0 N N N -28.949 -13.845 44.258 1.246 -3.460 2.148 H13A 52V 35 52V H13B H13B H 0 0 N N N -30.740 -13.826 44.124 0.776 -1.939 2.943 H13B 52V 36 52V H15 H15 H 0 1 N N N -30.715 -16.031 40.725 0.320 0.177 2.410 H15 52V 37 52V H17 H17 H 0 1 N N N -34.574 -14.371 39.902 -3.409 1.814 1.118 H17 52V 38 52V H26 H26 H 0 1 N N N -36.121 -14.377 41.428 -4.111 -3.017 0.119 H26 52V 39 52V H26A H26A H 0 0 N N N -35.263 -14.101 42.981 -4.141 -1.755 1.374 H26A 52V 40 52V H26B H26B H 0 0 N N N -36.979 -13.603 42.803 -5.648 -2.576 0.900 H26B 52V 41 52V H21 H21 H 0 1 N N N -37.477 -11.511 42.322 -6.755 -2.027 -1.189 H21 52V 42 52V H22 H22 H 0 1 N N N -36.937 -9.212 41.581 -7.146 -0.320 -2.916 H22 52V 43 52V H23 H23 H 0 1 N N N -34.695 -8.755 40.640 -5.543 1.521 -3.222 H23 52V 44 52V H27 H27 H 0 1 N N N -32.751 -10.278 39.178 -3.549 2.823 -1.220 H27 52V 45 52V H27A H27A H 0 0 N N N -32.341 -9.412 40.698 -2.263 1.646 -1.578 H27A 52V 46 52V H27B H27B H 0 0 N N N -31.906 -11.144 40.506 -3.266 2.297 -2.897 H27B 52V 47 52V H19 H19 H 0 1 N N N -31.782 -12.207 42.357 -1.954 -1.841 -0.577 H19 52V 48 52V H8 H8 H 0 1 N N N -29.314 -9.272 44.014 2.740 2.289 0.678 H8 52V 49 52V H8A H8A H 0 1 N N N -30.363 -8.374 42.865 2.893 2.762 -1.031 H8A 52V 50 52V H8B H8B H 0 1 N N N -30.324 -10.170 42.831 1.899 1.355 -0.582 H8B 52V 51 52V HN7 HN7 H 0 1 N N N -26.346 -6.260 41.249 7.505 2.278 -1.488 HN7 52V 52 52V HN7A HN7A H 0 0 N N N -25.602 -6.970 39.981 8.240 0.769 -1.424 HN7A 52V 53 52V HN9 HN9 H 0 1 N N N -26.436 -11.180 38.899 4.171 -2.921 0.099 HN9 52V 54 52V HN9A HN9A H 0 0 N N N -25.680 -11.596 40.285 5.807 -3.041 -0.264 HN9A 52V 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 52V N9 C1 SING N N 1 52V N2 C1 DOUB Y N 2 52V C1 C6 SING Y N 3 52V C2 O17 SING N N 4 52V C2 H2 SING N N 5 52V C2 H2A SING N N 6 52V C2 H2B SING N N 7 52V N2 C3 SING Y N 8 52V N7 C3 SING N N 9 52V C3 N4 DOUB Y N 10 52V C6 C10 SING N N 11 52V C6 C5 DOUB Y N 12 52V C14 C12 SING N N 13 52V C11 C12 SING N N 14 52V C12 C13 SING N N 15 52V C12 H12 SING N N 16 52V C13 H13 SING N N 17 52V C13 H13A SING N N 18 52V C13 H13B SING N N 19 52V C15 C14 DOUB Y N 20 52V C14 C19 SING Y N 21 52V C16 C15 SING Y N 22 52V C15 H15 SING N N 23 52V O17 C16 SING N N 24 52V C16 C17 DOUB Y N 25 52V C17 C18 SING Y N 26 52V C17 H17 SING N N 27 52V C18 C25 SING Y N 28 52V C18 C19 DOUB Y N 29 52V C20 C26 SING N N 30 52V C26 H26 SING N N 31 52V C26 H26A SING N N 32 52V C26 H26B SING N N 33 52V C25 C20 DOUB Y N 34 52V C20 C21 SING Y N 35 52V C22 C21 DOUB Y N 36 52V C21 H21 SING N N 37 52V C23 C22 SING Y N 38 52V C22 H22 SING N N 39 52V C24 C23 DOUB Y N 40 52V C23 H23 SING N N 41 52V C27 C24 SING N N 42 52V C24 C25 SING Y N 43 52V C27 H27 SING N N 44 52V C27 H27A SING N N 45 52V C27 H27B SING N N 46 52V C19 H19 SING N N 47 52V C10 C11 TRIP N N 48 52V N4 C5 SING Y N 49 52V C5 C8 SING N N 50 52V C8 H8 SING N N 51 52V C8 H8A SING N N 52 52V C8 H8B SING N N 53 52V N7 HN7 SING N N 54 52V N7 HN7A SING N N 55 52V N9 HN9 SING N N 56 52V N9 HN9A SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 52V SMILES ACDLabs 10.04 "C(#CC(c2cc(c1c(cccc1C)C)cc(OC)c2)C)c3c(nc(nc3C)N)N" 52V SMILES_CANONICAL CACTVS 3.341 "COc1cc(cc(c1)c2c(C)cccc2C)[C@H](C)C#Cc3c(C)nc(N)nc3N" 52V SMILES CACTVS 3.341 "COc1cc(cc(c1)c2c(C)cccc2C)[CH](C)C#Cc3c(C)nc(N)nc3N" 52V SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1c2cc(cc(c2)OC)[C@H](C)C#Cc3c(nc(nc3N)N)C)C" 52V SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cccc(c1c2cc(cc(c2)OC)C(C)C#Cc3c(nc(nc3N)N)C)C" 52V InChI InChI 1.03 "InChI=1S/C24H26N4O/c1-14(9-10-21-17(4)27-24(26)28-23(21)25)18-11-19(13-20(12-18)29-5)22-15(2)7-6-8-16(22)3/h6-8,11-14H,1-5H3,(H4,25,26,27,28)/t14-/m1/s1" 52V InChIKey InChI 1.03 XZXVRKHUCSXVBM-CQSZACIVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 52V "SYSTEMATIC NAME" ACDLabs 10.04 "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 52V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3S)-3-[3-(2,6-dimethylphenyl)-5-methoxy-phenyl]but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 52V "Create component" 2008-10-31 RCSB 52V "Modify aromatic_flag" 2011-06-04 RCSB 52V "Modify descriptor" 2011-06-04 RCSB #