data_532 # _chem_comp.id 532 _chem_comp.name "(5S)-2-amino-3-methyl-5-[3-(pyridin-3-yl)phenyl]-5-(thiophen-3-yl)-3,5-dihydro-4H-imidazol-4-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H16 N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms WAY-253284 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-06-03 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 532 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3S7M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 532 C1 C1 C 0 1 N N N 15.556 -4.112 17.541 2.825 3.533 1.126 C1 532 1 532 N1 N1 N 0 1 N N N 15.071 -5.319 16.931 2.157 2.386 0.506 N1 532 2 532 O1 O1 O 0 1 N N N 13.915 -6.108 18.749 2.611 0.768 2.074 O1 532 3 532 S1 S1 S 0 1 Y N N 15.289 -10.687 18.360 3.746 -2.780 -0.730 S1 532 4 532 C2 C2 C 0 1 N N N 14.303 -6.206 17.586 2.118 1.143 1.031 C2 532 5 532 N2 N2 N 0 1 N N N 14.686 -6.816 15.311 0.982 1.278 -1.024 N2 532 6 532 C3 C3 C 0 1 N N S 13.999 -7.291 16.554 1.326 0.318 0.037 C3 532 7 532 N3 N3 N 0 1 N N N 16.101 -5.064 14.878 1.349 3.566 -1.448 N3 532 8 532 C4 C4 C 0 1 N N N 15.262 -5.730 15.672 1.480 2.428 -0.688 C4 532 9 532 N4 N4 N 0 1 Y N N 9.995 -2.965 13.762 -4.911 0.635 -1.688 N4 532 10 532 C5 C5 C 0 1 Y N N 12.482 -7.379 16.446 0.077 -0.229 0.680 C5 532 11 532 C6 C6 C 0 1 Y N N 11.702 -8.489 16.785 0.166 -0.946 1.859 C6 532 12 532 C7 C7 C 0 1 Y N N 10.313 -8.416 16.635 -0.976 -1.452 2.454 C7 532 13 532 C8 C8 C 0 1 Y N N 9.684 -7.265 16.169 -2.211 -1.242 1.875 C8 532 14 532 C9 C9 C 0 1 Y N N 10.452 -6.141 15.818 -2.306 -0.519 0.687 C9 532 15 532 C10 C10 C 0 1 Y N N 11.833 -6.250 15.983 -1.153 -0.008 0.094 C10 532 16 532 C11 C11 C 0 1 Y N N 9.893 -4.858 15.329 -3.630 -0.291 0.058 C11 532 17 532 C12 C12 C 0 1 Y N N 8.757 -4.271 15.914 -4.793 -0.795 0.648 C12 532 18 532 C13 C13 C 0 1 Y N N 8.264 -3.064 15.425 -6.004 -0.555 0.022 C13 532 19 532 C14 C14 C 0 1 Y N N 8.911 -2.447 14.353 -6.025 0.171 -1.155 C14 532 20 532 C15 C15 C 0 1 Y N N 10.452 -4.145 14.264 -3.735 0.431 -1.129 C15 532 21 532 C16 C16 C 0 1 Y N N 14.521 -8.640 16.957 2.171 -0.800 -0.516 C16 532 22 532 C17 C17 C 0 1 Y N N 14.950 -9.631 16.028 2.254 -1.071 -1.870 C17 532 23 532 C18 C18 C 0 1 Y N N 15.383 -10.772 16.659 3.047 -2.095 -2.191 C18 532 24 532 C19 C19 C 0 1 Y N N 14.662 -9.095 18.250 2.897 -1.603 0.264 C19 532 25 532 H1 H1 H 0 1 N N N 16.159 -3.550 16.813 3.859 3.580 0.784 H1 532 26 532 H1A H1A H 0 1 N N N 14.703 -3.496 17.864 2.307 4.450 0.846 H1A 532 27 532 H1B H1B H 0 1 N N N 16.176 -4.366 18.413 2.805 3.421 2.211 H1B 532 28 532 HN3 HN3 H 0 1 N N N 16.302 -5.409 13.961 1.746 4.398 -1.148 HN3 532 29 532 HN3A HN3A H 0 0 N N N 16.529 -4.220 15.199 0.858 3.536 -2.284 HN3A 532 30 532 H6 H6 H 0 1 N N N 12.166 -9.390 17.158 1.130 -1.113 2.316 H6 532 31 532 H7 H7 H 0 1 N N N 9.712 -9.277 16.888 -0.901 -2.012 3.375 H7 532 32 532 H8 H8 H 0 1 N N N 8.608 -7.236 16.077 -3.101 -1.637 2.340 H8 532 33 532 H10 H10 H 0 1 N N N 12.438 -5.391 15.731 -1.222 0.557 -0.824 H10 532 34 532 H12 H12 H 0 1 N N N 8.266 -4.757 16.744 -4.747 -1.359 1.568 H12 532 35 532 H13 H13 H 0 1 N N N 7.391 -2.610 15.870 -6.922 -0.930 0.449 H13 532 36 532 H14 H14 H 0 1 N N N 8.520 -1.510 13.984 -6.968 0.361 -1.645 H14 532 37 532 H15 H15 H 0 1 N N N 11.328 -4.570 13.796 -2.845 0.827 -1.595 H15 532 38 532 H17 H17 H 0 1 N N N 14.936 -9.501 14.956 1.717 -0.498 -2.612 H17 532 39 532 H18 H18 H 0 1 N N N 15.748 -11.639 16.129 3.231 -2.448 -3.195 H18 532 40 532 H19 H19 H 0 1 N N N 14.401 -8.503 19.115 2.954 -1.541 1.340 H19 532 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 532 C1 N1 SING N N 1 532 N1 C2 SING N N 2 532 N1 C4 SING N N 3 532 O1 C2 DOUB N N 4 532 S1 C18 SING Y N 5 532 S1 C19 SING Y N 6 532 C2 C3 SING N N 7 532 N2 C3 SING N N 8 532 N2 C4 DOUB N N 9 532 C3 C5 SING N N 10 532 C3 C16 SING N N 11 532 N3 C4 SING N N 12 532 N4 C14 DOUB Y N 13 532 N4 C15 SING Y N 14 532 C5 C6 DOUB Y N 15 532 C5 C10 SING Y N 16 532 C6 C7 SING Y N 17 532 C7 C8 DOUB Y N 18 532 C8 C9 SING Y N 19 532 C9 C10 DOUB Y N 20 532 C9 C11 SING Y N 21 532 C11 C12 SING Y N 22 532 C11 C15 DOUB Y N 23 532 C12 C13 DOUB Y N 24 532 C13 C14 SING Y N 25 532 C16 C17 SING Y N 26 532 C16 C19 DOUB Y N 27 532 C17 C18 DOUB Y N 28 532 C1 H1 SING N N 29 532 C1 H1A SING N N 30 532 C1 H1B SING N N 31 532 N3 HN3 SING N N 32 532 N3 HN3A SING N N 33 532 C6 H6 SING N N 34 532 C7 H7 SING N N 35 532 C8 H8 SING N N 36 532 C10 H10 SING N N 37 532 C12 H12 SING N N 38 532 C13 H13 SING N N 39 532 C14 H14 SING N N 40 532 C15 H15 SING N N 41 532 C17 H17 SING N N 42 532 C18 H18 SING N N 43 532 C19 H19 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 532 SMILES ACDLabs 12.01 "O=C4N(C(=NC4(c1ccsc1)c3cccc(c2cccnc2)c3)N)C" 532 SMILES_CANONICAL CACTVS 3.370 "CN1C(=N[C@](C1=O)(c2cscc2)c3cccc(c3)c4cccnc4)N" 532 SMILES CACTVS 3.370 "CN1C(=N[C](C1=O)(c2cscc2)c3cccc(c3)c4cccnc4)N" 532 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CN1C(=O)[C@](N=C1N)(c2cccc(c2)c3cccnc3)c4ccsc4" 532 SMILES "OpenEye OEToolkits" 1.7.2 "CN1C(=O)C(N=C1N)(c2cccc(c2)c3cccnc3)c4ccsc4" 532 InChI InChI 1.03 "InChI=1S/C19H16N4OS/c1-23-17(24)19(22-18(23)20,16-7-9-25-12-16)15-6-2-4-13(10-15)14-5-3-8-21-11-14/h2-12H,1H3,(H2,20,22)/t19-/m0/s1" 532 InChIKey InChI 1.03 AOGBXAFIKRFUPJ-IBGZPJMESA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 532 "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-2-amino-3-methyl-5-[3-(pyridin-3-yl)phenyl]-5-(thiophen-3-yl)-3,5-dihydro-4H-imidazol-4-one" 532 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(5S)-2-azanyl-3-methyl-5-(3-pyridin-3-ylphenyl)-5-thiophen-3-yl-imidazol-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 532 "Create component" 2011-06-03 RCSB 532 "Modify aromatic_flag" 2011-06-04 RCSB 532 "Modify descriptor" 2011-06-04 RCSB 532 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 532 _pdbx_chem_comp_synonyms.name WAY-253284 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##