data_53L # _chem_comp.id 53L _chem_comp.name "(2R,4S,4aS,5S)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4,4a-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H18 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-22 _chem_comp.pdbx_modified_date 2015-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 374.348 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 53L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5CDO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 53L C2 C1 C 0 1 N N S 60.822 -46.512 55.323 -1.050 0.688 -0.585 C2 53L 1 53L C3 C2 C 0 1 N N S 60.076 -45.208 55.460 -2.432 1.260 -0.260 C3 53L 2 53L C5 C3 C 0 1 N N N 60.312 -44.249 54.327 -3.466 0.684 -1.229 C5 53L 3 53L O6 O1 O 0 1 N N N 60.503 -44.482 56.604 -2.390 2.684 -0.396 O6 53L 4 53L C7 C4 C 0 1 N N R 59.978 -45.093 57.759 -1.422 3.319 0.444 C7 53L 5 53L C9 C5 C 0 1 N N N 60.464 -44.326 58.965 -1.434 4.827 0.187 C9 53L 6 53L C10 C6 C 0 1 N N N 60.585 -46.471 57.829 -0.030 2.759 0.131 C10 53L 7 53L N11 N1 N 0 1 N N N 60.493 -47.200 56.562 -0.052 1.300 0.295 N11 53L 8 53L C12 C7 C 0 1 Y N N 60.341 -48.612 56.562 1.215 0.741 0.156 C12 53L 9 53L C13 C8 C 0 1 Y N N 60.085 -49.306 57.727 2.310 1.496 0.577 C13 53L 10 53L C14 C9 C 0 1 Y N N 59.903 -50.663 57.722 3.589 0.991 0.470 C14 53L 11 53L C15 C10 C 0 1 Y N N 59.965 -51.324 56.526 3.789 -0.272 -0.056 C15 53L 12 53L C16 C11 C 0 1 Y N N 60.206 -50.683 55.340 2.709 -1.023 -0.476 C16 53L 13 53L C17 C12 C 0 1 Y N N 60.377 -49.320 55.377 1.422 -0.520 -0.377 C17 53L 14 53L C18 C13 C 0 1 N N N 60.672 -48.652 54.090 0.284 -1.377 -0.871 C18 53L 15 53L C19 C14 C 0 1 N N S 60.311 -47.212 54.080 -1.047 -0.826 -0.354 C19 53L 16 53L C20 C15 C 0 1 N N N 58.849 -47.286 53.869 -1.176 -1.112 1.115 C20 53L 17 53L O21 O2 O 0 1 N N N 58.145 -47.499 55.003 -0.244 -0.629 1.952 O21 53L 18 53L N22 N2 N 0 1 N N N 58.267 -47.256 52.719 -2.155 -1.809 1.605 N22 53L 19 53L C23 C16 C 0 1 N N N 59.039 -47.051 51.610 -3.126 -2.327 0.838 C23 53L 20 53L O24 O3 O 0 1 N N N 58.520 -47.108 50.507 -4.017 -2.969 1.362 O24 53L 21 53L N25 N3 N 0 1 N N N 60.361 -46.689 51.752 -3.141 -2.153 -0.493 N25 53L 22 53L C26 C17 C 0 1 N N N 61.050 -46.639 52.932 -2.181 -1.452 -1.117 C26 53L 23 53L O27 O4 O 0 1 N N N 62.205 -46.263 53.044 -2.231 -1.318 -2.321 O27 53L 24 53L N28 N4 N 1 1 N N N 59.769 -52.740 56.545 5.160 -0.818 -0.168 N28 53L 25 53L O29 O5 O -1 1 N N N 60.203 -53.325 57.541 6.112 -0.155 0.203 O29 53L 26 53L O30 O6 O 0 1 N N N 59.163 -53.236 55.589 5.336 -1.931 -0.631 O30 53L 27 53L H2 H1 H 0 1 N N N 61.904 -46.330 55.243 -0.802 0.904 -1.624 H2 53L 28 53L H3 H2 H 0 1 N N N 58.999 -45.421 55.529 -2.703 0.999 0.763 H3 53L 29 53L H51 H3 H 0 1 N N N 59.737 -43.328 54.500 -3.783 -0.299 -0.880 H51 53L 30 53L H52 H4 H 0 1 N N N 61.383 -44.007 54.269 -4.329 1.347 -1.276 H52 53L 31 53L H53 H5 H 0 1 N N N 59.989 -44.711 53.382 -3.023 0.592 -2.220 H53 53L 32 53L H7 H6 H 0 1 N N N 58.879 -45.147 57.744 -1.664 3.125 1.489 H7 53L 33 53L H91 H7 H 0 1 N N N 60.064 -44.788 59.880 -2.425 5.225 0.410 H91 53L 34 53L H92 H8 H 0 1 N N N 61.563 -44.347 58.994 -0.696 5.311 0.827 H92 53L 35 53L H93 H9 H 0 1 N N N 60.119 -43.284 58.900 -1.192 5.020 -0.858 H93 53L 36 53L H102 H10 H 0 0 N N N 60.059 -47.047 58.604 0.240 3.007 -0.896 H102 53L 37 53L H103 H11 H 0 0 N N N 61.646 -46.374 58.101 0.699 3.193 0.815 H103 53L 38 53L H13 H12 H 0 1 N N N 60.027 -48.768 58.662 2.156 2.483 0.988 H13 53L 39 53L H14 H13 H 0 1 N N N 59.715 -51.199 58.641 4.432 1.581 0.796 H14 53L 40 53L H16 H14 H 0 1 N N N 60.260 -51.229 54.410 2.869 -2.009 -0.886 H16 53L 41 53L H182 H15 H 0 0 N N N 60.106 -49.160 53.295 0.278 -1.377 -1.961 H182 53L 42 53L H183 H16 H 0 0 N N N 61.749 -48.743 53.888 0.416 -2.398 -0.511 H183 53L 43 53L H21 H17 H 0 1 N N N 57.226 -47.610 54.790 -0.352 -0.828 2.892 H21 53L 44 53L H25 H18 H 0 1 N N N 60.859 -46.442 50.921 -3.859 -2.543 -1.015 H25 53L 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 53L O24 C23 DOUB N N 1 53L C23 N25 SING N N 2 53L C23 N22 SING N N 3 53L N25 C26 SING N N 4 53L N22 C20 DOUB N N 5 53L C26 O27 DOUB N N 6 53L C26 C19 SING N N 7 53L C20 C19 SING N N 8 53L C20 O21 SING N N 9 53L C19 C18 SING N N 10 53L C19 C2 SING N N 11 53L C18 C17 SING N N 12 53L C5 C3 SING N N 13 53L C2 C3 SING N N 14 53L C2 N11 SING N N 15 53L C16 C17 DOUB Y N 16 53L C16 C15 SING Y N 17 53L C17 C12 SING Y N 18 53L C3 O6 SING N N 19 53L O30 N28 DOUB N N 20 53L C15 N28 SING N N 21 53L C15 C14 DOUB Y N 22 53L N28 O29 SING N N 23 53L N11 C12 SING N N 24 53L N11 C10 SING N N 25 53L C12 C13 DOUB Y N 26 53L O6 C7 SING N N 27 53L C14 C13 SING Y N 28 53L C7 C10 SING N N 29 53L C7 C9 SING N N 30 53L C2 H2 SING N N 31 53L C3 H3 SING N N 32 53L C5 H51 SING N N 33 53L C5 H52 SING N N 34 53L C5 H53 SING N N 35 53L C7 H7 SING N N 36 53L C9 H91 SING N N 37 53L C9 H92 SING N N 38 53L C9 H93 SING N N 39 53L C10 H102 SING N N 40 53L C10 H103 SING N N 41 53L C13 H13 SING N N 42 53L C14 H14 SING N N 43 53L C16 H16 SING N N 44 53L C18 H182 SING N N 45 53L C18 H183 SING N N 46 53L O21 H21 SING N N 47 53L N25 H25 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 53L SMILES ACDLabs 12.01 "C13C(OC(CN1c2ccc(N(=O)=O)cc2CC34C(O)=NC(NC4=O)=O)C)C" 53L InChI InChI 1.03 "InChI=1S/C17H18N4O6/c1-8-7-20-12-4-3-11(21(25)26)5-10(12)6-17(13(20)9(2)27-8)14(22)18-16(24)19-15(17)23/h3-5,8-9,13H,6-7H2,1-2H3,(H2,18,19,22,23,24)/t8-,9+,13-/m1/s1" 53L InChIKey InChI 1.03 DJZPHYIXNUOVJU-VYUIOLGVSA-N 53L SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN2[C@H]([C@H](C)O1)[C@]3(Cc4cc(ccc24)[N](=O)=O)C(=O)NC(=O)N=C3O" 53L SMILES CACTVS 3.385 "C[CH]1CN2[CH]([CH](C)O1)[C]3(Cc4cc(ccc24)[N](=O)=O)C(=O)NC(=O)N=C3O" 53L SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1CN2c3ccc(cc3C[C@@]4([C@H]2[C@@H](O1)C)C(=O)NC(=O)N=C4O)N(=O)=O" 53L SMILES "OpenEye OEToolkits" 1.9.2 "CC1CN2c3ccc(cc3CC4(C2C(O1)C)C(=O)NC(=O)N=C4O)N(=O)=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 53L "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4S,4aS,5S)-6'-hydroxy-2,4-dimethyl-8-nitro-1,2,4,4a-tetrahydro-2'H,6H-spiro[1,4-oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'(3'H)-dione" 53L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,4S,4aS,5S)-2,4-dimethyl-8-nitro-6'-oxidanyl-spiro[2,4,4a,6-tetrahydro-1H-[1,4]oxazino[4,3-a]quinoline-5,5'-pyrimidine]-2',4'-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 53L "Create component" 2015-07-22 RCSB 53L "Initial release" 2015-12-16 RCSB #