data_53Q # _chem_comp.id 53Q _chem_comp.name Clomifene _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H28 Cl N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[(E)-2-chloro-1,2-diphenylethenyl]-4-methoxybenzene; clomiphene" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-22 _chem_comp.pdbx_modified_date 2020-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.960 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 53Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5CQJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 53Q C5 C1 C 0 1 N N N -15.474 -0.917 -7.060 3.698 -0.673 1.402 C5 53Q 1 53Q C6 C2 C 0 1 Y N N -13.927 -1.503 -5.305 1.672 -0.900 0.179 C6 53Q 2 53Q C7 C3 C 0 1 Y N N -13.139 -2.436 -4.649 1.032 -0.270 1.238 C7 53Q 3 53Q C8 C4 C 0 1 Y N N -12.422 -2.055 -3.527 -0.327 -0.045 1.189 C8 53Q 4 53Q C9 C5 C 0 1 Y N N -12.477 -0.750 -3.045 -1.060 -0.451 0.072 C9 53Q 5 53Q C10 C6 C 0 1 Y N N -13.262 0.175 -3.732 -0.412 -1.083 -0.991 C10 53Q 6 53Q C11 C7 C 0 1 Y N N -13.989 -0.196 -4.850 0.947 -1.305 -0.934 C11 53Q 7 53Q C12 C8 C 0 1 N N N -11.740 -0.361 -1.815 -2.519 -0.212 0.016 C12 53Q 8 53Q C13 C9 C 0 1 N N N -11.864 -1.045 -0.614 -2.998 1.057 -0.002 C13 53Q 9 53Q C14 C10 C 0 1 Y N N -12.786 -2.149 -0.275 -2.069 2.193 -0.109 C14 53Q 10 53Q C15 C11 C 0 1 Y N N -12.407 -3.474 -0.476 -1.090 2.209 -1.108 C15 53Q 11 53Q CL CL1 CL 0 0 N N N -10.816 -0.727 0.724 -4.707 1.341 0.103 CL 53Q 12 53Q C19 C12 C 0 1 Y N N -14.011 -1.888 0.328 -2.164 3.266 0.784 C19 53Q 13 53Q C18 C13 C 0 1 Y N N -14.835 -2.927 0.726 -1.290 4.327 0.676 C18 53Q 14 53Q C17 C14 C 0 1 Y N N -14.447 -4.235 0.530 -0.321 4.332 -0.312 C17 53Q 15 53Q C16 C15 C 0 1 Y N N -13.236 -4.507 -0.070 -0.224 3.277 -1.203 C16 53Q 16 53Q C20 C16 C 0 1 Y N N -10.791 0.776 -1.987 -3.455 -1.357 -0.022 C20 53Q 17 53Q C25 C17 C 0 1 Y N N -10.099 0.943 -3.184 -3.551 -2.220 1.070 C25 53Q 18 53Q C24 C18 C 0 1 Y N N -9.214 1.994 -3.346 -4.425 -3.286 1.028 C24 53Q 19 53Q C23 C19 C 0 1 Y N N -9.003 2.889 -2.323 -5.207 -3.500 -0.093 C23 53Q 20 53Q C22 C20 C 0 1 Y N N -9.687 2.744 -1.136 -5.116 -2.648 -1.180 C22 53Q 21 53Q C21 C21 C 0 1 Y N N -10.578 1.700 -0.968 -4.250 -1.575 -1.148 C21 53Q 22 53Q O O1 O 0 1 N N N -14.653 -1.897 -6.407 3.013 -1.115 0.228 O 53Q 23 53Q H1 H1 H 0 1 N N N -15.616 -0.912 -8.151 3.569 0.403 1.514 H1 53Q 24 53Q H2 H2 H 0 1 N N N -16.361 -0.485 -6.573 3.287 -1.181 2.275 H2 53Q 25 53Q H4 H4 H 0 1 N N N -13.085 -3.452 -5.010 1.600 0.043 2.102 H4 53Q 26 53Q H5 H5 H 0 1 N N N -11.809 -2.783 -3.017 -0.824 0.444 2.013 H5 53Q 27 53Q H6 H6 H 0 1 N N N -13.304 1.197 -3.386 -0.976 -1.398 -1.857 H6 53Q 28 53Q H7 H7 H 0 1 N N N -14.601 0.530 -5.365 1.448 -1.794 -1.756 H7 53Q 29 53Q H8 H8 H 0 1 N N N -11.463 -3.697 -0.950 -1.013 1.386 -1.803 H8 53Q 30 53Q H9 H9 H 0 1 N N N -14.323 -0.866 0.487 -2.920 3.263 1.555 H9 53Q 31 53Q H10 H10 H 0 1 N N N -15.785 -2.712 1.192 -1.362 5.156 1.364 H10 53Q 32 53Q H11 H11 H 0 1 N N N -15.089 -5.044 0.845 0.360 5.167 -0.392 H11 53Q 33 53Q H12 H12 H 0 1 N N N -12.932 -5.532 -0.224 0.533 3.291 -1.973 H12 53Q 34 53Q H13 H13 H 0 1 N N N -10.255 0.245 -3.994 -2.941 -2.055 1.946 H13 53Q 35 53Q H14 H14 H 0 1 N N N -8.686 2.112 -4.281 -4.501 -3.955 1.873 H14 53Q 36 53Q H15 H15 H 0 1 N N N -8.304 3.702 -2.450 -5.890 -4.336 -0.121 H15 53Q 37 53Q H16 H16 H 0 1 N N N -9.527 3.449 -0.333 -5.729 -2.821 -2.052 H16 53Q 38 53Q H17 H17 H 0 1 N N N -11.114 1.600 -0.036 -4.184 -0.908 -1.995 H17 53Q 39 53Q C4 C22 C 0 1 N N N ? ? ? 5.187 -0.999 1.277 C4 53Q 40 53Q N1 N1 N 0 1 N N N ? ? ? 5.785 -0.163 0.227 N1 53Q 41 53Q C3 C23 C 0 1 N N N ? ? ? 7.249 -0.141 0.341 C3 53Q 42 53Q C2 C24 C 0 1 N N N ? ? ? 7.808 1.020 -0.484 C2 53Q 43 53Q C26 C26 C 0 1 N N N ? ? ? 5.367 -0.616 -1.107 C26 53Q 44 53Q C27 C27 C 0 1 N N N ? ? ? 5.768 -2.080 -1.297 C27 53Q 45 53Q H3 H3 H 0 1 N N N ? ? ? 5.684 -0.800 2.226 H3 53Q 46 53Q H18 H18 H 0 1 N N N ? ? ? 5.308 -2.051 1.017 H18 53Q 47 53Q H19 H19 H 0 1 N N N ? ? ? 7.530 -0.013 1.386 H19 53Q 48 53Q H20 H20 H 0 1 N N N ? ? ? 7.657 -1.081 -0.032 H20 53Q 49 53Q H21 H21 H 0 1 N N N ? ? ? 8.897 0.990 -0.462 H21 53Q 50 53Q H22 H22 H 0 1 N N N ? ? ? 7.463 0.932 -1.515 H22 53Q 51 53Q H23 H23 H 0 1 N N N ? ? ? 7.461 1.964 -0.064 H23 53Q 52 53Q H24 H24 H 0 1 N N N ? ? ? 4.286 -0.520 -1.201 H24 53Q 53 53Q H25 H25 H 0 1 N N N ? ? ? 5.854 -0.004 -1.867 H25 53Q 54 53Q H26 H26 H 0 1 N N N ? ? ? 6.834 -2.194 -1.102 H26 53Q 55 53Q H27 H27 H 0 1 N N N ? ? ? 5.203 -2.704 -0.605 H27 53Q 56 53Q H28 H28 H 0 1 N N N ? ? ? 5.552 -2.386 -2.321 H28 53Q 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 53Q C5 O SING N N 1 53Q O C6 SING N N 2 53Q C6 C11 DOUB Y N 3 53Q C6 C7 SING Y N 4 53Q C11 C10 SING Y N 5 53Q C7 C8 DOUB Y N 6 53Q C10 C9 DOUB Y N 7 53Q C8 C9 SING Y N 8 53Q C24 C25 DOUB Y N 9 53Q C24 C23 SING Y N 10 53Q C25 C20 SING Y N 11 53Q C9 C12 SING N N 12 53Q C23 C22 DOUB Y N 13 53Q C20 C12 SING N N 14 53Q C20 C21 DOUB Y N 15 53Q C12 C13 DOUB N E 16 53Q C22 C21 SING Y N 17 53Q C13 C14 SING N N 18 53Q C13 CL SING N N 19 53Q C15 C14 DOUB Y N 20 53Q C15 C16 SING Y N 21 53Q C14 C19 SING Y N 22 53Q C16 C17 DOUB Y N 23 53Q C19 C18 DOUB Y N 24 53Q C17 C18 SING Y N 25 53Q C5 H1 SING N N 26 53Q C5 H2 SING N N 27 53Q C7 H4 SING N N 28 53Q C8 H5 SING N N 29 53Q C10 H6 SING N N 30 53Q C11 H7 SING N N 31 53Q C15 H8 SING N N 32 53Q C19 H9 SING N N 33 53Q C18 H10 SING N N 34 53Q C17 H11 SING N N 35 53Q C16 H12 SING N N 36 53Q C25 H13 SING N N 37 53Q C24 H14 SING N N 38 53Q C23 H15 SING N N 39 53Q C22 H16 SING N N 40 53Q C21 H17 SING N N 41 53Q C5 C4 SING N N 42 53Q C4 N1 SING N N 43 53Q N1 C3 SING N N 44 53Q C3 C2 SING N N 45 53Q N1 C26 SING N N 46 53Q C26 C27 SING N N 47 53Q C4 H3 SING N N 48 53Q C4 H18 SING N N 49 53Q C3 H19 SING N N 50 53Q C3 H20 SING N N 51 53Q C2 H21 SING N N 52 53Q C2 H22 SING N N 53 53Q C2 H23 SING N N 54 53Q C26 H24 SING N N 55 53Q C26 H25 SING N N 56 53Q C27 H26 SING N N 57 53Q C27 H27 SING N N 58 53Q C27 H28 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 53Q SMILES ACDLabs 12.01 "C(Oc1ccc(cc1)\C(=C(/c2ccccc2)Cl)c3ccccc3)CN(CC)CC" 53Q InChI InChI 1.03 "InChI=1S/C26H28ClNO/c1-3-28(4-2)19-20-29-24-17-15-22(16-18-24)25(21-11-7-5-8-12-21)26(27)23-13-9-6-10-14-23/h5-18H,3-4,19-20H2,1-2H3/b26-25+" 53Q InChIKey InChI 1.03 GKIRPKYJQBWNGO-OCEACIFDSA-N 53Q SMILES_CANONICAL CACTVS 3.385 "CCN(CC)CCOc1ccc(cc1)\C(=C(Cl)/c2ccccc2)c3ccccc3" 53Q SMILES CACTVS 3.385 "CCN(CC)CCOc1ccc(cc1)C(=C(Cl)c2ccccc2)c3ccccc3" 53Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN(CC)CCOc1ccc(cc1)/C(=C(\c2ccccc2)/Cl)/c3ccccc3" 53Q SMILES "OpenEye OEToolkits" 2.0.7 "CCN(CC)CCOc1ccc(cc1)C(=C(c2ccccc2)Cl)c3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 53Q "SYSTEMATIC NAME" ACDLabs 12.01 "2-{4-[(E)-2-chloro-1,2-diphenylethenyl]phenoxy}-N,N-diethylethan-1-amine" 53Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[4-[(~{E})-2-chloranyl-1,2-diphenyl-ethenyl]phenoxy]-~{N},~{N}-diethyl-ethanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 53Q "Create component" 2015-07-22 RCSB 53Q "Initial release" 2015-08-19 RCSB 53Q "Modify formula" 2020-02-04 RCSB 53Q "Modify descriptor" 2020-02-04 RCSB 53Q "Modify synonyms" 2020-05-26 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 53Q "1-[(E)-2-chloro-1,2-diphenylethenyl]-4-methoxybenzene" ? ? 2 53Q clomiphene ? ? #