data_53R # _chem_comp.id 53R _chem_comp.name "5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.436 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 53R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EEJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 53R C20 C20 C 0 1 Y N N 8.932 -5.519 -5.511 -5.306 -0.234 -1.031 C20 53R 1 53R C21 C21 C 0 1 Y N N 7.827 -6.029 -6.176 -6.414 0.310 -1.648 C21 53R 2 53R C22 C22 C 0 1 Y N N 7.710 -5.821 -7.566 -6.538 1.683 -1.768 C22 53R 3 53R C23 C23 C 0 1 Y N N 8.678 -5.096 -8.285 -5.553 2.517 -1.271 C23 53R 4 53R C24 C24 C 0 1 Y N N 9.789 -4.590 -7.598 -4.440 1.984 -0.653 C24 53R 5 53R C25 C25 C 0 1 Y N N 9.897 -4.800 -6.214 -4.311 0.602 -0.529 C25 53R 6 53R C18 C18 C 0 1 Y N N 10.984 -4.306 -5.514 -3.117 0.023 0.135 C18 53R 7 53R C19 C19 C 0 1 Y N N 11.435 -5.006 -4.378 -2.122 0.859 0.637 C19 53R 8 53R C17 C17 C 0 1 Y N N 11.627 -3.126 -5.945 -2.990 -1.358 0.264 C17 53R 9 53R C16 C16 C 0 1 Y N N 12.733 -2.608 -5.271 -1.874 -1.893 0.885 C16 53R 10 53R O17 O17 O 0 1 N N N 13.367 -1.424 -5.674 -1.747 -3.240 1.012 O17 53R 11 53R C2 C2 C 0 1 N N N 14.752 -1.144 -5.058 -2.803 -4.044 0.483 C2 53R 12 53R C15 C15 C 0 1 Y N N 13.159 -3.295 -4.128 -0.884 -1.053 1.377 C15 53R 13 53R C14 C14 C 0 1 Y N N 12.531 -4.470 -3.712 -1.012 0.318 1.255 C14 53R 14 53R C12 C12 C 0 1 N N S 13.084 -5.081 -2.464 0.063 1.224 1.797 C12 53R 15 53R C13 C13 C 0 1 N N N 11.977 -5.074 -1.397 0.209 0.998 3.303 C13 53R 16 53R C11 C11 C 0 1 N N N 13.776 -6.367 -2.731 1.340 0.923 1.130 C11 53R 17 53R C10 C10 C 0 1 N N N 14.389 -7.357 -2.871 2.359 0.683 0.598 C10 53R 18 53R C6 C6 C 0 1 Y N N 15.139 -8.548 -2.927 3.602 0.391 -0.051 C6 53R 19 53R C5 C5 C 0 1 Y N N 15.267 -9.251 -4.140 4.762 1.094 0.273 C5 53R 20 53R C8 C8 C 0 1 N N N 14.616 -8.796 -5.471 4.730 2.181 1.317 C8 53R 21 53R N4 N4 N 0 1 Y N N 15.990 -10.379 -4.135 5.891 0.794 -0.348 N4 53R 22 53R C3 C3 C 0 1 Y N N 16.602 -10.823 -3.031 5.934 -0.159 -1.268 C3 53R 23 53R N7 N7 N 0 1 N N N 17.289 -11.969 -3.057 7.137 -0.437 -1.890 N7 53R 24 53R N2 N2 N 0 1 Y N N 16.477 -10.186 -1.892 4.858 -0.854 -1.609 N2 53R 25 53R C1 C1 C 0 1 Y N N 15.782 -9.051 -1.761 3.687 -0.620 -1.030 C1 53R 26 53R N9 N9 N 0 1 N N N 15.746 -8.464 -0.541 2.568 -1.351 -1.385 N9 53R 27 53R H20 H20 H 0 1 N N N 9.045 -5.679 -4.449 -5.212 -1.305 -0.934 H20 53R 28 53R H21 H21 H 0 1 N N N 7.068 -6.577 -5.638 -7.186 -0.337 -2.038 H21 53R 29 53R H22 H22 H 0 1 N N N 6.858 -6.228 -8.090 -7.406 2.104 -2.252 H22 53R 30 53R H23 H23 H 0 1 N N N 8.567 -4.933 -9.347 -5.654 3.588 -1.368 H23 53R 31 53R H24 H24 H 0 1 N N N 10.555 -4.044 -8.128 -3.672 2.636 -0.266 H24 53R 32 53R H19 H19 H 0 1 N N N 10.954 -5.913 -4.042 -2.219 1.931 0.543 H19 53R 33 53R H17 H17 H 0 1 N N N 11.254 -2.611 -6.818 -3.761 -2.011 -0.119 H17 53R 34 53R H2 H2 H 0 1 N N N 15.503 -1.077 -5.859 -3.739 -3.790 0.981 H2 53R 35 53R H2A H2A H 0 1 N N N 14.721 -0.194 -4.504 -2.899 -3.859 -0.587 H2A 53R 36 53R H2B H2B H 0 1 N N N 15.020 -1.961 -4.372 -2.577 -5.097 0.650 H2B 53R 37 53R H15 H15 H 0 1 N N N 13.990 -2.908 -3.557 -0.014 -1.472 1.861 H15 53R 38 53R H12 H12 H 0 1 N N N 13.906 -4.484 -2.042 -0.209 2.263 1.610 H12 53R 39 53R H13 H13 H 0 1 N N N 12.432 -5.072 -0.396 0.987 1.654 3.695 H13 53R 40 53R H13A H13A H 0 0 N N N 11.356 -4.174 -1.519 -0.737 1.221 3.797 H13A 53R 41 53R H13B H13B H 0 0 N N N 11.351 -5.971 -1.513 0.481 -0.041 3.490 H13B 53R 42 53R H8 H8 H 0 1 N N N 13.530 -8.688 -5.331 4.939 1.750 2.296 H8 53R 43 53R H8A H8A H 0 1 N N N 15.044 -7.830 -5.777 5.484 2.933 1.082 H8A 53R 44 53R H8B H8B H 0 1 N N N 14.812 -9.547 -6.250 3.744 2.646 1.327 H8B 53R 45 53R HN7 HN7 H 0 1 N N N 17.461 -12.234 -4.006 7.933 0.062 -1.651 HN7 53R 46 53R HN7A HN7A H 0 0 N N N 18.161 -11.846 -2.583 7.185 -1.132 -2.565 HN7A 53R 47 53R HN9 HN9 H 0 1 N N N 15.737 -9.169 0.168 1.715 -1.171 -0.959 HN9 53R 48 53R HN9A HN9A H 0 0 N N N 16.553 -7.885 -0.426 2.636 -2.045 -2.059 HN9A 53R 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 53R C20 C21 DOUB Y N 1 53R C20 C25 SING Y N 2 53R C21 C22 SING Y N 3 53R C22 C23 DOUB Y N 4 53R C23 C24 SING Y N 5 53R C24 C25 DOUB Y N 6 53R C25 C18 SING Y N 7 53R C18 C19 DOUB Y N 8 53R C18 C17 SING Y N 9 53R C19 C14 SING Y N 10 53R C17 C16 DOUB Y N 11 53R C16 O17 SING N N 12 53R C16 C15 SING Y N 13 53R O17 C2 SING N N 14 53R C15 C14 DOUB Y N 15 53R C14 C12 SING N N 16 53R C12 C13 SING N N 17 53R C12 C11 SING N N 18 53R C11 C10 TRIP N N 19 53R C10 C6 SING N N 20 53R C6 C5 DOUB Y N 21 53R C6 C1 SING Y N 22 53R C5 C8 SING N N 23 53R C5 N4 SING Y N 24 53R N4 C3 DOUB Y N 25 53R C3 N7 SING N N 26 53R C3 N2 SING Y N 27 53R N2 C1 DOUB Y N 28 53R C1 N9 SING N N 29 53R C20 H20 SING N N 30 53R C21 H21 SING N N 31 53R C22 H22 SING N N 32 53R C23 H23 SING N N 33 53R C24 H24 SING N N 34 53R C19 H19 SING N N 35 53R C17 H17 SING N N 36 53R C2 H2 SING N N 37 53R C2 H2A SING N N 38 53R C2 H2B SING N N 39 53R C15 H15 SING N N 40 53R C12 H12 SING N N 41 53R C13 H13 SING N N 42 53R C13 H13A SING N N 43 53R C13 H13B SING N N 44 53R C8 H8 SING N N 45 53R C8 H8A SING N N 46 53R C8 H8B SING N N 47 53R N7 HN7 SING N N 48 53R N7 HN7A SING N N 49 53R N9 HN9 SING N N 50 53R N9 HN9A SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 53R SMILES ACDLabs 10.04 "C(#CC(c2cc(c1ccccc1)cc(OC)c2)C)c3c(nc(nc3C)N)N" 53R SMILES_CANONICAL CACTVS 3.341 "COc1cc(cc(c1)c2ccccc2)[C@@H](C)C#Cc3c(C)nc(N)nc3N" 53R SMILES CACTVS 3.341 "COc1cc(cc(c1)c2ccccc2)[CH](C)C#Cc3c(C)nc(N)nc3N" 53R SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(nc(n1)N)N)C#C[C@H](C)c2cc(cc(c2)OC)c3ccccc3" 53R SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(nc(n1)N)N)C#CC(C)c2cc(cc(c2)OC)c3ccccc3" 53R InChI InChI 1.03 "InChI=1S/C22H22N4O/c1-14(9-10-20-15(2)25-22(24)26-21(20)23)17-11-18(13-19(12-17)27-3)16-7-5-4-6-8-16/h4-8,11-14H,1-3H3,(H4,23,24,25,26)/t14-/m0/s1" 53R InChIKey InChI 1.03 JPENSYBRTSIYGO-AWEZNQCLSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 53R "SYSTEMATIC NAME" ACDLabs 10.04 "5-[(3R)-3-(5-methoxybiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 53R "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3R)-3-(3-methoxy-5-phenyl-phenyl)but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 53R "Create component" 2008-09-15 RCSB 53R "Modify aromatic_flag" 2011-06-04 RCSB 53R "Modify descriptor" 2011-06-04 RCSB #