data_53S # _chem_comp.id 53S _chem_comp.name "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H24 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.463 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 53S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EEK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 53S C6 C6 C 0 1 Y N N 15.043 -8.455 -3.016 -3.880 -0.479 -0.014 C6 53S 1 53S C5 C5 C 0 1 Y N N 15.135 -9.161 -4.235 -5.023 -1.150 0.423 C5 53S 2 53S C2 C2 C 0 1 N N N 14.771 -1.192 -4.965 2.307 4.277 -0.291 C2 53S 3 53S C20 C20 C 0 1 Y N N 8.875 -5.187 -6.303 5.028 0.354 -0.824 C20 53S 4 53S C21 C21 C 0 1 Y N N 7.958 -5.575 -7.291 6.183 -0.259 -1.265 C21 53S 5 53S C22 C22 C 0 1 Y N N 8.165 -5.325 -8.669 6.369 -1.616 -1.068 C22 53S 6 53S C26 C26 C 0 1 N N N 7.102 -5.804 -9.719 7.632 -2.279 -1.553 C26 53S 7 53S C23 C23 C 0 1 Y N N 9.335 -4.681 -9.104 5.399 -2.365 -0.428 C23 53S 8 53S C24 C24 C 0 1 Y N N 10.255 -4.301 -8.114 4.240 -1.763 0.019 C24 53S 9 53S C25 C25 C 0 1 Y N N 10.040 -4.536 -6.725 4.048 -0.397 -0.178 C25 53S 10 53S C18 C18 C 0 1 Y N N 11.032 -4.114 -5.812 2.804 0.256 0.300 C18 53S 11 53S C19 C19 C 0 1 Y N N 11.401 -4.891 -4.667 1.824 -0.495 0.946 C19 53S 12 53S C17 C17 C 0 1 Y N N 11.712 -2.892 -6.121 2.615 1.623 0.109 C17 53S 13 53S C16 C16 C 0 1 Y N N 12.731 -2.406 -5.290 1.452 2.227 0.557 C16 53S 14 53S O17 O17 O 0 1 N N N 13.410 -1.213 -5.563 1.264 3.560 0.372 O17 53S 15 53S C15 C15 C 0 1 Y N N 13.068 -3.174 -4.164 0.478 1.470 1.194 C15 53S 16 53S C14 C14 C 0 1 Y N N 12.431 -4.379 -3.851 0.667 0.115 1.389 C14 53S 17 53S C12 C12 C 0 1 N N S 12.941 -5.013 -2.575 -0.391 -0.699 2.087 C12 53S 18 53S C13 C13 C 0 1 N N N 11.852 -5.095 -1.473 -0.610 -0.149 3.498 C13 53S 19 53S C11 C11 C 0 1 N N N 13.635 -6.291 -2.821 -1.651 -0.620 1.329 C11 53S 20 53S C10 C10 C 0 1 N N N 14.273 -7.270 -2.930 -2.655 -0.557 0.724 C10 53S 21 53S C8 C8 C 0 1 N N N 14.464 -8.699 -5.580 -4.990 -1.971 1.686 C8 53S 22 53S N4 N4 N 0 1 Y N N 15.878 -10.283 -4.235 -6.135 -1.054 -0.286 N4 53S 23 53S C3 C3 C 0 1 Y N N 16.499 -10.759 -3.123 -6.178 -0.335 -1.399 C3 53S 24 53S N7 N7 N 0 1 N N N 17.170 -11.926 -3.198 -7.364 -0.264 -2.106 N7 53S 25 53S N2 N2 N 0 1 Y N N 16.367 -10.121 -1.963 -5.119 0.319 -1.853 N2 53S 26 53S C1 C1 C 0 1 Y N N 15.704 -8.963 -1.855 -3.961 0.271 -1.204 C1 53S 27 53S N9 N9 N 0 1 N N N 15.616 -8.358 -0.676 -2.859 0.954 -1.683 N9 53S 28 53S H2 H2 H 0 1 N N N 15.524 -1.187 -5.767 3.230 4.187 0.282 H2 53S 29 53S H2A H2A H 0 1 N N N 14.886 -0.289 -4.348 2.457 3.861 -1.288 H2A 53S 30 53S H2B H2B H 0 1 N N N 14.909 -2.085 -4.338 2.031 5.328 -0.373 H2B 53S 31 53S H20 H20 H 0 1 N N N 8.689 -5.383 -5.257 4.886 1.413 -0.974 H20 53S 32 53S H21 H21 H 0 1 N N N 7.056 -6.086 -6.988 6.944 0.322 -1.766 H21 53S 33 53S H26 H26 H 0 1 N N N 6.125 -5.916 -9.227 8.385 -2.246 -0.765 H26 53S 34 53S H26A H26A H 0 0 N N N 7.023 -5.061 -10.526 7.422 -3.317 -1.811 H26A 53S 35 53S H26B H26B H 0 0 N N N 7.413 -6.771 -10.140 8.004 -1.753 -2.433 H26B 53S 36 53S H23 H23 H 0 1 N N N 9.518 -4.487 -10.151 5.549 -3.424 -0.276 H23 53S 37 53S H24 H24 H 0 1 N N N 11.167 -3.808 -8.419 3.483 -2.349 0.518 H24 53S 38 53S H19 H19 H 0 1 N N N 10.913 -5.827 -4.439 1.969 -1.554 1.099 H19 53S 39 53S H17 H17 H 0 1 N N N 11.436 -2.338 -7.006 3.374 2.210 -0.387 H17 53S 40 53S H15 H15 H 0 1 N N N 13.852 -2.819 -3.512 -0.428 1.943 1.543 H15 53S 41 53S H12 H12 H 0 1 N N N 13.709 -4.337 -2.170 -0.069 -1.738 2.148 H12 53S 42 53S H13 H13 H 0 1 N N N 12.332 -5.114 -0.483 -0.933 0.890 3.437 H13 53S 43 53S H13A H13A H 0 0 N N N 11.193 -4.217 -1.543 -1.376 -0.738 4.003 H13A 53S 44 53S H13B H13B H 0 0 N N N 11.259 -6.011 -1.611 0.322 -0.208 4.059 H13B 53S 45 53S H8 H8 H 0 1 N N N 13.379 -8.591 -5.431 -5.259 -1.343 2.535 H8 53S 46 53S H8A H8A H 0 1 N N N 14.889 -7.733 -5.889 -5.701 -2.793 1.603 H8A 53S 47 53S H8B H8B H 0 1 N N N 14.654 -9.450 -6.361 -3.987 -2.372 1.833 H8B 53S 48 53S HN7 HN7 H 0 1 N N N 17.336 -12.154 -4.157 -8.149 -0.737 -1.787 HN7 53S 49 53S HN7A HN7A H 0 0 N N N 18.044 -11.839 -2.720 -7.412 0.258 -2.922 HN7A 53S 50 53S HN9 HN9 H 0 1 N N N 15.594 -9.045 0.051 -2.019 0.920 -1.198 HN9 53S 51 53S HN9A HN9A H 0 0 N N N 16.409 -7.762 -0.547 -2.924 1.468 -2.503 HN9A 53S 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 53S C6 C5 DOUB Y N 1 53S C6 C10 SING N N 2 53S C6 C1 SING Y N 3 53S C5 C8 SING N N 4 53S C5 N4 SING Y N 5 53S C2 O17 SING N N 6 53S C20 C21 DOUB Y N 7 53S C20 C25 SING Y N 8 53S C21 C22 SING Y N 9 53S C22 C26 SING N N 10 53S C22 C23 DOUB Y N 11 53S C23 C24 SING Y N 12 53S C24 C25 DOUB Y N 13 53S C25 C18 SING Y N 14 53S C18 C19 DOUB Y N 15 53S C18 C17 SING Y N 16 53S C19 C14 SING Y N 17 53S C17 C16 DOUB Y N 18 53S C16 O17 SING N N 19 53S C16 C15 SING Y N 20 53S C15 C14 DOUB Y N 21 53S C14 C12 SING N N 22 53S C12 C13 SING N N 23 53S C12 C11 SING N N 24 53S C11 C10 TRIP N N 25 53S N4 C3 DOUB Y N 26 53S C3 N7 SING N N 27 53S C3 N2 SING Y N 28 53S N2 C1 DOUB Y N 29 53S C1 N9 SING N N 30 53S C2 H2 SING N N 31 53S C2 H2A SING N N 32 53S C2 H2B SING N N 33 53S C20 H20 SING N N 34 53S C21 H21 SING N N 35 53S C26 H26 SING N N 36 53S C26 H26A SING N N 37 53S C26 H26B SING N N 38 53S C23 H23 SING N N 39 53S C24 H24 SING N N 40 53S C19 H19 SING N N 41 53S C17 H17 SING N N 42 53S C15 H15 SING N N 43 53S C12 H12 SING N N 44 53S C13 H13 SING N N 45 53S C13 H13A SING N N 46 53S C13 H13B SING N N 47 53S C8 H8 SING N N 48 53S C8 H8A SING N N 49 53S C8 H8B SING N N 50 53S N7 HN7 SING N N 51 53S N7 HN7A SING N N 52 53S N9 HN9 SING N N 53 53S N9 HN9A SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 53S SMILES ACDLabs 10.04 "C(#CC(c2cc(c1ccc(cc1)C)cc(OC)c2)C)c3c(nc(nc3C)N)N" 53S SMILES_CANONICAL CACTVS 3.341 "COc1cc(cc(c1)c2ccc(C)cc2)[C@@H](C)C#Cc3c(C)nc(N)nc3N" 53S SMILES CACTVS 3.341 "COc1cc(cc(c1)c2ccc(C)cc2)[CH](C)C#Cc3c(C)nc(N)nc3N" 53S SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1ccc(cc1)c2cc(cc(c2)OC)[C@@H](C)C#Cc3c(nc(nc3N)N)C" 53S SMILES "OpenEye OEToolkits" 1.5.0 "Cc1ccc(cc1)c2cc(cc(c2)OC)C(C)C#Cc3c(nc(nc3N)N)C" 53S InChI InChI 1.03 "InChI=1S/C23H24N4O/c1-14-5-8-17(9-6-14)19-11-18(12-20(13-19)28-4)15(2)7-10-21-16(3)26-23(25)27-22(21)24/h5-6,8-9,11-13,15H,1-4H3,(H4,24,25,26,27)/t15-/m0/s1" 53S InChIKey InChI 1.03 QVXYJVHNRPNRJL-HNNXBMFYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 53S "SYSTEMATIC NAME" ACDLabs 10.04 "5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 53S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3R)-3-[3-methoxy-5-(4-methylphenyl)phenyl]but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 53S "Create component" 2008-09-15 RCSB 53S "Modify aromatic_flag" 2011-06-04 RCSB 53S "Modify descriptor" 2011-06-04 RCSB #