data_53U # _chem_comp.id 53U _chem_comp.name D-phenylalanyl-N-benzyl-L-prolinamide _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-1-((2R)-2-amino-3-phenyl-propanoyl)-N-(phenylmethyl)pyrrolidine-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-01-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 351.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 53U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ZFF _chem_comp.pdbx_subcomponent_list "DPN PRO ABN" _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 53U N1 N1 N 0 1 N N N 16.390 -15.783 23.160 3.037 2.023 0.561 N DPN 1 53U C2 C2 C 0 1 N N R 17.657 -15.012 23.146 2.704 0.634 0.216 CA DPN 2 53U C3 C3 C 0 1 N N N 17.436 -13.631 22.568 1.273 0.562 -0.252 C DPN 3 53U O1 O1 O 0 1 N N N 16.506 -12.945 23.032 0.711 1.564 -0.640 O DPN 4 53U C1 C1 C 0 1 N N N 18.172 -14.917 24.595 3.631 0.150 -0.901 CB DPN 5 53U C16 C16 C 0 1 Y N N 19.592 -14.371 24.744 5.049 0.106 -0.393 CG DPN 6 53U C17 C17 C 0 1 Y N N 20.691 -14.964 24.089 5.537 -1.046 0.196 CD1 DPN 7 53U C21 C21 C 0 1 Y N N 19.822 -13.249 25.551 5.864 1.215 -0.521 CD2 DPN 8 53U C18 C18 C 0 1 Y N N 21.986 -14.454 24.235 6.838 -1.086 0.662 CE1 DPN 9 53U C20 C20 C 0 1 Y N N 21.101 -12.741 25.697 7.163 1.176 -0.051 CE2 DPN 10 53U C19 C19 C 0 1 Y N N 22.189 -13.333 25.046 7.651 0.025 0.539 CZ DPN 11 53U N2 N2 N 0 1 N N N 18.245 -13.171 21.589 0.619 -0.616 -0.238 N PRO 12 53U C7 C7 C 0 1 N N S 18.028 -11.822 21.062 -0.774 -0.828 -0.659 CA PRO 13 53U C8 C8 C 0 1 N N N 16.609 -11.729 20.528 -1.701 -0.018 0.211 C PRO 14 53U O2 O2 O 0 1 N N N 16.215 -12.728 19.926 -1.249 0.673 1.100 O PRO 15 53U C6 C6 C 0 1 N N N 18.944 -11.895 19.803 -1.079 -2.332 -0.497 CB PRO 16 53U C5 C5 C 0 1 N N N 20.104 -12.767 20.317 0.332 -2.978 -0.521 CG PRO 17 53U C4 C4 C 0 1 N N N 19.376 -13.939 21.023 1.179 -1.905 0.208 CD PRO 18 53U N3 N3 N 0 1 N N N 15.971 -10.576 20.754 -3.032 -0.061 0.001 N ABN 19 53U C9 C9 C 0 1 N N N 14.659 -10.430 20.113 -3.932 0.726 0.846 C ABN 20 53U C10 C10 C 0 1 Y N N 13.567 -10.492 21.190 -5.357 0.503 0.407 C1 ABN 21 53U C11 C11 C 0 1 Y N N 13.386 -9.397 22.037 -6.100 -0.519 0.966 C2 ABN 22 53U C12 C12 C 0 1 Y N N 12.402 -9.443 23.015 -7.406 -0.724 0.563 C3 ABN 23 53U C13 C13 C 0 1 Y N N 11.589 -10.567 23.164 -7.969 0.094 -0.399 C4 ABN 24 53U C14 C14 C 0 1 Y N N 11.779 -11.663 22.309 -7.226 1.117 -0.957 C5 ABN 25 53U C15 C15 C 0 1 Y N N 12.770 -11.613 21.327 -5.921 1.324 -0.551 C6 ABN 26 53U HN1 HN1 H 0 1 N N N 16.035 -15.859 22.228 2.926 2.630 -0.237 H DPN 27 53U HN1A HN1A H 0 0 N N N 16.561 -16.698 23.527 2.482 2.345 1.340 H2 DPN 28 53U H2 H2 H 0 1 N N N 18.400 -15.519 22.513 2.832 0.001 1.094 HA DPN 29 53U H1 H1 H 0 1 N N N 17.497 -14.245 25.145 3.327 -0.848 -1.218 HB2 DPN 30 53U H1A H1A H 0 1 N N N 18.159 -15.931 25.021 3.569 0.834 -1.747 HB3 DPN 31 53U H17 H17 H 0 1 N N N 20.530 -15.829 23.462 4.901 -1.914 0.292 HD1 DPN 32 53U H21 H21 H 0 1 N N N 18.996 -12.778 26.062 5.484 2.113 -0.985 HD2 DPN 33 53U H18 H18 H 0 1 N N N 22.818 -14.920 23.728 7.218 -1.986 1.122 HE1 DPN 34 53U H20 H20 H 0 1 N N N 21.262 -11.875 26.322 7.798 2.044 -0.147 HE2 DPN 35 53U H19 H19 H 0 1 N N N 23.182 -12.926 25.169 8.667 -0.007 0.903 HZ DPN 36 53U H7 H7 H 0 1 N N N 18.206 -11.008 21.780 -0.894 -0.538 -1.703 HA PRO 37 53U H6 H6 H 0 1 N N N 19.284 -10.901 19.478 -1.684 -2.697 -1.326 HB2 PRO 38 53U H6A H6A H 0 1 N N N 18.432 -12.349 18.942 -1.573 -2.521 0.456 HB3 PRO 39 53U H5 H5 H 0 1 N N N 20.751 -12.213 21.013 0.678 -3.121 -1.544 HG2 PRO 40 53U H5A H5A H 0 1 N N N 20.741 -13.122 19.493 0.339 -3.921 0.027 HG3 PRO 41 53U H4 H4 H 0 1 N N N 19.990 -14.440 21.786 2.226 -1.985 -0.085 HD2 PRO 42 53U H4A H4A H 0 1 N N N 19.062 -14.738 20.335 1.076 -2.010 1.288 HD3 PRO 43 53U HN3 HN3 H 0 1 N N N 16.364 -9.856 21.326 -3.393 -0.613 -0.710 HN1 ABN 44 53U H9 H9 H 0 1 N N N 14.608 -9.463 19.591 -3.820 0.416 1.885 H1 ABN 45 53U H9A H9A H 0 1 N N N 14.509 -11.244 19.388 -3.685 1.784 0.754 H2A ABN 46 53U H11 H11 H 0 1 N N N 14.007 -8.520 21.932 -5.660 -1.158 1.717 H2 ABN 47 53U H12 H12 H 0 1 N N N 12.264 -8.596 23.670 -7.987 -1.523 0.999 H3 ABN 48 53U H13 H13 H 0 1 N N N 10.825 -10.593 23.926 -8.990 -0.067 -0.714 H4 ABN 49 53U H14 H14 H 0 1 N N N 11.161 -12.543 22.410 -7.666 1.756 -1.709 H5 ABN 50 53U H15 H15 H 0 1 N N N 12.915 -12.457 20.669 -5.342 2.126 -0.985 H6 ABN 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 53U C1 C2 SING N N 1 53U C1 C16 SING N N 2 53U N1 C2 SING N N 3 53U C2 C3 SING N N 4 53U C3 O1 DOUB N N 5 53U C3 N2 SING N N 6 53U N2 C4 SING N N 7 53U N2 C7 SING N N 8 53U C4 C5 SING N N 9 53U C5 C6 SING N N 10 53U C6 C7 SING N N 11 53U C7 C8 SING N N 12 53U C8 N3 SING N N 13 53U C8 O2 DOUB N N 14 53U N3 C9 SING N N 15 53U C9 C10 SING N N 16 53U C10 C11 DOUB Y N 17 53U C10 C15 SING Y N 18 53U C11 C12 SING Y N 19 53U C12 C13 DOUB Y N 20 53U C13 C14 SING Y N 21 53U C14 C15 DOUB Y N 22 53U C16 C17 DOUB Y N 23 53U C16 C21 SING Y N 24 53U C17 C18 SING Y N 25 53U C18 C19 DOUB Y N 26 53U C19 C20 SING Y N 27 53U C20 C21 DOUB Y N 28 53U C1 H1 SING N N 29 53U C1 H1A SING N N 30 53U N1 HN1 SING N N 31 53U N1 HN1A SING N N 32 53U C2 H2 SING N N 33 53U C4 H4 SING N N 34 53U C4 H4A SING N N 35 53U C5 H5 SING N N 36 53U C5 H5A SING N N 37 53U C6 H6 SING N N 38 53U C6 H6A SING N N 39 53U C7 H7 SING N N 40 53U N3 HN3 SING N N 41 53U C9 H9 SING N N 42 53U C9 H9A SING N N 43 53U C11 H11 SING N N 44 53U C12 H12 SING N N 45 53U C13 H13 SING N N 46 53U C14 H14 SING N N 47 53U C15 H15 SING N N 48 53U C17 H17 SING N N 49 53U C18 H18 SING N N 50 53U C19 H19 SING N N 51 53U C20 H20 SING N N 52 53U C21 H21 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 53U SMILES ACDLabs 12.01 "O=C(NCc1ccccc1)C3N(C(=O)C(N)Cc2ccccc2)CCC3" 53U SMILES_CANONICAL CACTVS 3.370 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3ccccc3" 53U SMILES CACTVS 3.370 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3ccccc3" 53U SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)NCc3ccccc3)N" 53U SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCc3ccccc3)N" 53U InChI InChI 1.03 "InChI=1S/C21H25N3O2/c22-18(14-16-8-3-1-4-9-16)21(26)24-13-7-12-19(24)20(25)23-15-17-10-5-2-6-11-17/h1-6,8-11,18-19H,7,12-15,22H2,(H,23,25)/t18-,19+/m1/s1" 53U InChIKey InChI 1.03 MEPJWLFTTFHOQO-MOPGFXCFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 53U "SYSTEMATIC NAME" ACDLabs 12.01 D-phenylalanyl-N-benzyl-L-prolinamide 53U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]-N-(phenylmethyl)pyrrolidine-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 53U "Create component" 2008-01-08 PDBJ 53U "Modify subcomponent list" 2010-11-15 RCSB 53U "Modify aromatic_flag" 2011-06-04 RCSB 53U "Modify descriptor" 2011-06-04 RCSB 53U "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 53U _pdbx_chem_comp_synonyms.name "(2S)-1-((2R)-2-amino-3-phenyl-propanoyl)-N-(phenylmethyl)pyrrolidine-2-carboxamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##