data_53Z # _chem_comp.id 53Z _chem_comp.name "1-(4-aminobenzyl)-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-02-15 _chem_comp.pdbx_modified_date 2014-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.334 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 53Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4J58 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 53Z CAJ CAJ C 0 1 N N N 7.842 21.373 19.282 -5.295 0.894 -0.115 CAJ 53Z 1 53Z CAH CAH C 0 1 N N N 9.136 21.171 18.497 -6.702 0.657 0.488 CAH 53Z 2 53Z CAI CAI C 0 1 N N N 8.545 22.227 17.444 -7.042 -0.754 -0.060 CAI 53Z 3 53Z CAK CAK C 0 1 N N N 7.411 21.234 17.206 -5.674 -1.468 -0.051 CAK 53Z 4 53Z NAT NAT N 0 1 N N N 6.743 21.019 18.451 -4.635 -0.424 -0.069 NAT 53Z 5 53Z C C C 0 1 N N N 5.531 20.624 18.722 -3.305 -0.639 -0.049 C 53Z 6 53Z O O O 0 1 N N N 5.190 20.474 19.905 -2.874 -1.772 -0.013 O 53Z 7 53Z CA CA C 0 1 N N N 4.623 20.335 17.531 -2.353 0.529 -0.072 CA 53Z 8 53Z N N N 0 1 N N N 3.408 19.743 18.047 -0.974 0.035 -0.043 N 53Z 9 53Z CAP CAP C 0 1 N N N 3.087 18.520 17.716 0.055 0.906 -0.057 CAP 53Z 10 53Z OAB OAB O 0 1 N N N 3.732 17.883 16.875 -0.162 2.102 -0.094 OAB 53Z 11 53Z NAO NAO N 0 1 N N N 1.942 18.151 18.278 1.323 0.452 -0.031 NAO 53Z 12 53Z CAM CAM C 0 1 N N N 1.261 16.868 18.153 2.441 1.399 -0.046 CAM 53Z 13 53Z CAS CAS C 0 1 Y N N 1.144 16.358 19.612 3.743 0.640 -0.010 CAS 53Z 14 53Z CAF CAF C 0 1 Y N N 2.123 16.627 20.567 4.323 0.322 1.204 CAF 53Z 15 53Z CAD CAD C 0 1 Y N N 1.993 16.155 21.874 5.515 -0.374 1.240 CAD 53Z 16 53Z CAR CAR C 0 1 Y N N 0.882 15.410 22.254 6.132 -0.754 0.054 CAR 53Z 17 53Z NAA NAA N 0 1 N N N 0.758 14.953 23.516 7.338 -1.458 0.087 NAA 53Z 18 53Z CAE CAE C 0 1 Y N N -0.098 15.143 21.300 5.546 -0.432 -1.163 CAE 53Z 19 53Z CAG CAG C 0 1 Y N N 0.029 15.614 19.995 4.351 0.259 -1.192 CAG 53Z 20 53Z H1 H1 H 0 1 N N N 7.753 22.427 19.584 -5.378 1.241 -1.145 H1 53Z 21 53Z H2 H2 H 0 1 N N N 7.849 20.735 20.178 -4.742 1.616 0.485 H2 53Z 22 53Z H3 H3 H 0 1 N N N 9.283 20.155 18.101 -6.664 0.654 1.578 H3 53Z 23 53Z H4 H4 H 0 1 N N N 10.049 21.497 19.017 -7.413 1.399 0.126 H4 53Z 24 53Z H5 H5 H 0 1 N N N 9.186 22.413 16.569 -7.747 -1.264 0.598 H5 53Z 25 53Z H6 H6 H 0 1 N N N 8.233 23.187 17.880 -7.440 -0.689 -1.072 H6 53Z 26 53Z H7 H7 H 0 1 N N N 6.704 21.644 16.469 -5.576 -2.071 0.851 H7 53Z 27 53Z H8 H8 H 0 1 N N N 7.820 20.283 16.833 -5.580 -2.100 -0.934 H8 53Z 28 53Z H9 H9 H 0 1 N N N 5.119 19.636 16.841 -2.512 1.110 -0.981 H9 53Z 29 53Z H10 H10 H 0 1 N N N 4.390 21.270 17.000 -2.531 1.160 0.798 H10 53Z 30 53Z H11 H11 H 0 1 N N N 2.814 20.269 18.656 -0.801 -0.919 -0.015 H11 53Z 31 53Z H12 H12 H 0 1 N N N 1.494 18.834 18.855 1.496 -0.502 -0.002 H12 53Z 32 53Z H13 H13 H 0 1 N N N 0.265 16.997 17.703 2.395 2.000 -0.954 H13 53Z 33 53Z H14 H14 H 0 1 N N N 1.852 16.170 17.542 2.376 2.050 0.825 H14 53Z 34 53Z H15 H15 H 0 1 N N N 2.992 17.207 20.293 3.843 0.618 2.125 H15 53Z 35 53Z H16 H16 H 0 1 N N N 2.764 16.371 22.599 5.968 -0.622 2.188 H16 53Z 36 53Z H17 H17 H 0 1 N N N 1.550 15.240 24.054 7.746 -1.682 0.938 H17 53Z 37 53Z H18 H18 H 0 1 N N N -0.075 15.325 23.925 7.768 -1.722 -0.741 H18 53Z 38 53Z H19 H19 H 0 1 N N N -0.967 14.564 21.576 6.023 -0.726 -2.087 H19 53Z 39 53Z H20 H20 H 0 1 N N N -0.745 15.400 19.272 3.893 0.505 -2.139 H20 53Z 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 53Z OAB CAP DOUB N N 1 53Z CAK CAI SING N N 2 53Z CAK NAT SING N N 3 53Z CAI CAH SING N N 4 53Z CA N SING N N 5 53Z CA C SING N N 6 53Z CAP N SING N N 7 53Z CAP NAO SING N N 8 53Z CAM NAO SING N N 9 53Z CAM CAS SING N N 10 53Z NAT C SING N N 11 53Z NAT CAJ SING N N 12 53Z CAH CAJ SING N N 13 53Z C O DOUB N N 14 53Z CAS CAG DOUB Y N 15 53Z CAS CAF SING Y N 16 53Z CAG CAE SING Y N 17 53Z CAF CAD DOUB Y N 18 53Z CAE CAR DOUB Y N 19 53Z CAD CAR SING Y N 20 53Z CAR NAA SING N N 21 53Z CAJ H1 SING N N 22 53Z CAJ H2 SING N N 23 53Z CAH H3 SING N N 24 53Z CAH H4 SING N N 25 53Z CAI H5 SING N N 26 53Z CAI H6 SING N N 27 53Z CAK H7 SING N N 28 53Z CAK H8 SING N N 29 53Z CA H9 SING N N 30 53Z CA H10 SING N N 31 53Z N H11 SING N N 32 53Z NAO H12 SING N N 33 53Z CAM H13 SING N N 34 53Z CAM H14 SING N N 35 53Z CAF H15 SING N N 36 53Z CAD H16 SING N N 37 53Z NAA H17 SING N N 38 53Z NAA H18 SING N N 39 53Z CAE H19 SING N N 40 53Z CAG H20 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 53Z SMILES ACDLabs 12.01 "O=C(N1CCCC1)CNC(=O)NCc2ccc(N)cc2" 53Z InChI InChI 1.03 "InChI=1S/C14H20N4O2/c15-12-5-3-11(4-6-12)9-16-14(20)17-10-13(19)18-7-1-2-8-18/h3-6H,1-2,7-10,15H2,(H2,16,17,20)" 53Z InChIKey InChI 1.03 QDOWQYVYSCTSGP-UHFFFAOYSA-N 53Z SMILES_CANONICAL CACTVS 3.370 "Nc1ccc(CNC(=O)NCC(=O)N2CCCC2)cc1" 53Z SMILES CACTVS 3.370 "Nc1ccc(CNC(=O)NCC(=O)N2CCCC2)cc1" 53Z SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1CNC(=O)NCC(=O)N2CCCC2)N" 53Z SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1CNC(=O)NCC(=O)N2CCCC2)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 53Z "SYSTEMATIC NAME" ACDLabs 12.01 "1-(4-aminobenzyl)-3-[2-oxo-2-(pyrrolidin-1-yl)ethyl]urea" 53Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(4-aminophenyl)methyl]-3-(2-oxidanylidene-2-pyrrolidin-1-yl-ethyl)urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 53Z "Create component" 2013-02-15 RCSB 53Z "Initial release" 2014-02-19 RCSB #