data_542 # _chem_comp.id 542 _chem_comp.name "N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-methylaminopurin-9-yl)oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxy-benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H25 F N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-06-22 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 536.512 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 542 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HVH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 542 F30 F30 F 0 1 N N N 0.420 7.192 17.897 1.988 -5.996 1.181 F30 542 1 542 C29 C29 C 0 1 Y N N 0.437 8.395 17.225 2.626 -4.834 0.923 C29 542 2 542 C26 C26 C 0 1 Y N N -0.432 9.353 17.626 4.011 -4.796 0.899 C26 542 3 542 C25 C25 C 0 1 Y N N -0.421 10.562 16.954 4.667 -3.611 0.635 C25 542 4 542 C28 C28 C 0 1 Y N N 1.368 8.556 16.246 1.894 -3.684 0.677 C28 542 5 542 C27 C27 C 0 1 Y N N 1.373 9.815 15.594 2.541 -2.494 0.412 C27 542 6 542 C24 C24 C 0 1 Y N N 0.504 10.836 15.969 3.934 -2.451 0.393 C24 542 7 542 C22 C22 C 0 1 Y N N 0.508 12.147 15.306 4.634 -1.174 0.109 C22 542 8 542 C21 C21 C 0 1 Y N N -0.700 12.817 15.007 3.901 -0.019 -0.132 C21 542 9 542 C23 C23 C 0 1 Y N N 1.741 12.670 14.802 6.030 -1.134 0.090 C23 542 10 542 C33 C33 C 0 1 Y N N 1.747 13.903 14.144 6.688 0.053 -0.173 C33 542 11 542 O34 O34 O 0 1 N N N 2.933 14.437 13.673 8.047 0.086 -0.190 O34 542 12 542 C31 C31 C 0 1 Y N N 0.542 14.584 13.896 5.962 1.215 -0.421 C31 542 13 542 O32 O32 O 0 1 N N N 0.652 15.728 13.147 6.609 2.379 -0.680 O32 542 14 542 C20 C20 C 0 1 Y N N -0.700 14.076 14.356 4.562 1.181 -0.399 C20 542 15 542 C18 C18 C 0 1 N N N -1.975 14.704 14.160 3.788 2.411 -0.656 C18 542 16 542 O19 O19 O 0 1 N N N -3.045 14.143 14.368 4.365 3.455 -0.887 O19 542 17 542 N17 N17 N 0 1 N N N -1.944 16.030 13.833 2.441 2.376 -0.633 N17 542 18 542 C16 C16 C 0 1 N N N -3.165 16.791 13.732 1.672 3.597 -0.887 C16 542 19 542 C15 C15 C 0 1 N N N -2.812 18.232 13.843 0.199 3.290 -0.804 C15 542 20 542 C14 C14 C 0 1 N N N -3.603 19.131 14.394 -0.568 3.975 0.007 C14 542 21 542 C6 C6 C 0 1 N N R -3.256 20.567 14.508 -2.041 3.668 0.090 C6 542 22 542 C4 C4 C 0 1 N N S -3.883 21.151 15.770 -2.447 3.372 1.551 C4 542 23 542 O5 O5 O 0 1 N N N -3.128 22.295 16.223 -3.024 4.531 2.155 O5 542 24 542 C2 C2 C 0 1 N N R -5.243 21.567 15.212 -3.498 2.246 1.428 C2 542 25 542 O3 O3 O 0 1 N N N -5.956 22.537 15.999 -4.756 2.676 1.952 O3 542 26 542 O13 O13 O 0 1 N N N -3.773 21.360 13.400 -2.343 2.453 -0.630 O13 542 27 542 C1 C1 C 0 1 N N R -4.924 22.133 13.866 -3.603 1.995 -0.093 C1 542 28 542 N10 N10 N 0 1 Y N N -5.953 21.947 12.843 -3.783 0.567 -0.363 N10 542 29 542 C9 C9 C 0 1 Y N N -6.573 20.757 12.498 -2.799 -0.329 -0.659 C9 542 30 542 C11 C11 C 0 1 Y N N -6.358 22.876 11.914 -4.973 -0.117 -0.358 C11 542 31 542 N40 N40 N 0 1 Y N N -6.004 24.175 11.844 -6.242 0.210 -0.138 N40 542 32 542 C39 C39 C 0 1 Y N N -6.553 24.807 10.815 -7.192 -0.699 -0.208 C39 542 33 542 N38 N38 N 0 1 Y N N -7.413 24.276 9.926 -6.942 -1.963 -0.495 N38 542 34 542 C35 C35 C 0 1 Y N N -7.760 23.015 10.050 -5.703 -2.384 -0.732 C35 542 35 542 C12 C12 C 0 1 Y N N -7.225 22.219 11.071 -4.656 -1.450 -0.669 C12 542 36 542 N8 N8 N 0 1 Y N N -7.326 20.886 11.440 -3.313 -1.511 -0.840 N8 542 37 542 N7 N7 N 0 1 N N N -8.653 22.558 9.092 -5.451 -3.711 -1.032 N7 542 38 542 C36 C36 C 0 1 N N N -9.137 21.181 9.091 -6.557 -4.671 -1.092 C36 542 39 542 H26 H26 H 0 1 N N N -1.113 9.178 18.446 4.578 -5.696 1.087 H26 542 40 542 H25 H25 H 0 1 N N N -1.156 11.311 17.208 5.746 -3.582 0.617 H25 542 41 542 H28 H28 H 0 1 N N N 2.062 7.772 15.981 0.814 -3.718 0.692 H28 542 42 542 H27 H27 H 0 1 N N N 2.069 9.986 14.786 1.969 -1.599 0.219 H27 542 43 542 H21 H21 H 0 1 N N N -1.640 12.361 15.280 2.822 -0.050 -0.114 H21 542 44 542 H23 H23 H 0 1 N N N 2.660 12.116 14.929 6.597 -2.033 0.282 H23 542 45 542 HO34 HO34 H 0 0 N N N 2.874 14.559 12.733 8.435 -0.093 -1.058 HO34 542 46 542 HO32 HO32 H 0 0 N N N 0.677 16.483 13.723 6.791 2.528 -1.618 HO32 542 47 542 HN17 HN17 H 0 0 N N N -1.066 16.477 13.662 1.980 1.543 -0.448 HN17 542 48 542 H16 H16 H 0 1 N N N -3.652 16.596 12.765 1.929 4.350 -0.142 H16 542 49 542 H16A H16A H 0 0 N N N -3.863 16.504 14.532 1.909 3.975 -1.882 H16A 542 50 542 H15 H15 H 0 1 N N N -1.859 18.558 13.452 -0.224 2.506 -1.414 H15 542 51 542 H14 H14 H 0 1 N N N -4.556 18.803 14.783 -0.145 4.759 0.617 H14 542 52 542 H6 H6 H 0 1 N N N -2.157 20.613 14.519 -2.624 4.500 -0.304 H6 542 53 542 H4 H4 H 0 1 N N N -3.926 20.477 16.638 -1.586 3.031 2.125 H4 542 54 542 HO5 HO5 H 0 1 N N N -2.962 22.217 17.155 -2.425 5.289 2.203 HO5 542 55 542 H2 H2 H 0 1 N N N -5.919 20.699 15.199 -3.158 1.347 1.943 H2 542 56 542 HO3 HO3 H 0 1 N N N -6.113 22.187 16.868 -4.733 2.905 2.891 HO3 542 57 542 H1 H1 H 0 1 N N N -4.788 23.218 13.989 -4.427 2.569 -0.516 H1 542 58 542 H9 H9 H 0 1 N N N -6.448 19.832 13.041 -1.748 -0.093 -0.732 H9 542 59 542 H39 H39 H 0 1 N N N -6.285 25.844 10.678 -8.213 -0.400 -0.023 H39 542 60 542 HN7 HN7 H 0 1 N N N -9.468 23.129 9.190 -4.543 -4.006 -1.202 HN7 542 61 542 H36 H36 H 0 1 N N N -9.259 20.835 8.054 -6.167 -5.659 -1.340 H36 542 62 542 H36A H36A H 0 0 N N N -8.411 20.537 9.609 -7.057 -4.710 -0.125 H36A 542 63 542 H36B H36B H 0 0 N N N -10.106 21.133 9.609 -7.268 -4.359 -1.857 H36B 542 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 542 F30 C29 SING N N 1 542 C29 C26 DOUB Y N 2 542 C29 C28 SING Y N 3 542 C26 C25 SING Y N 4 542 C25 C24 DOUB Y N 5 542 C28 C27 DOUB Y N 6 542 C27 C24 SING Y N 7 542 C24 C22 SING Y N 8 542 C22 C21 DOUB Y N 9 542 C22 C23 SING Y N 10 542 C21 C20 SING Y N 11 542 C23 C33 DOUB Y N 12 542 C33 O34 SING N N 13 542 C33 C31 SING Y N 14 542 C31 O32 SING N N 15 542 C31 C20 DOUB Y N 16 542 C20 C18 SING N N 17 542 C18 O19 DOUB N N 18 542 C18 N17 SING N N 19 542 N17 C16 SING N N 20 542 C16 C15 SING N N 21 542 C15 C14 DOUB N N 22 542 C14 C6 SING N N 23 542 C6 C4 SING N N 24 542 C6 O13 SING N N 25 542 C4 O5 SING N N 26 542 C4 C2 SING N N 27 542 C2 O3 SING N N 28 542 C2 C1 SING N N 29 542 O13 C1 SING N N 30 542 C1 N10 SING N N 31 542 N10 C9 SING Y N 32 542 N10 C11 SING Y E 33 542 C9 N8 DOUB Y N 34 542 C11 N40 DOUB Y N 35 542 C11 C12 SING Y N 36 542 N40 C39 SING Y N 37 542 C39 N38 DOUB Y N 38 542 N38 C35 SING Y N 39 542 C35 C12 DOUB Y N 40 542 C35 N7 SING N N 41 542 C12 N8 SING Y N 42 542 N7 C36 SING N N 43 542 C26 H26 SING N N 44 542 C25 H25 SING N N 45 542 C28 H28 SING N N 46 542 C27 H27 SING N N 47 542 C21 H21 SING N N 48 542 C23 H23 SING N N 49 542 O34 HO34 SING N N 50 542 O32 HO32 SING N N 51 542 N17 HN17 SING N N 52 542 C16 H16 SING N N 53 542 C16 H16A SING N N 54 542 C15 H15 SING N N 55 542 C14 H14 SING N N 56 542 C6 H6 SING N N 57 542 C4 H4 SING N N 58 542 O5 HO5 SING N N 59 542 C2 H2 SING N N 60 542 O3 HO3 SING N N 61 542 C1 H1 SING N N 62 542 C9 H9 SING N N 63 542 C39 H39 SING N N 64 542 N7 HN7 SING N N 65 542 C36 H36 SING N N 66 542 C36 H36A SING N N 67 542 C36 H36B SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 542 SMILES ACDLabs 10.04 "Fc1ccc(cc1)c2cc(c(O)c(O)c2)C(=O)NC/C=C/C5OC(n4cnc3c(ncnc34)NC)C(O)C5O" 542 SMILES_CANONICAL CACTVS 3.341 "CNc1ncnc2n(cnc12)[C@@H]3O[C@H](/C=C/CNC(=O)c4cc(cc(O)c4O)c5ccc(F)cc5)[C@@H](O)[C@H]3O" 542 SMILES CACTVS 3.341 "CNc1ncnc2n(cnc12)[CH]3O[CH](C=CCNC(=O)c4cc(cc(O)c4O)c5ccc(F)cc5)[CH](O)[CH]3O" 542 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)\C=C\CNC(=O)c4cc(cc(c4O)O)c5ccc(cc5)F)O)O" 542 SMILES "OpenEye OEToolkits" 1.5.0 "CNc1c2c(ncn1)n(cn2)C3C(C(C(O3)C=CCNC(=O)c4cc(cc(c4O)O)c5ccc(cc5)F)O)O" 542 InChI InChI 1.03 "InChI=1S/C26H25FN6O6/c1-28-23-19-24(31-11-30-23)33(12-32-19)26-22(37)21(36)18(39-26)3-2-8-29-25(38)16-9-14(10-17(34)20(16)35)13-4-6-15(27)7-5-13/h2-7,9-12,18,21-22,26,34-37H,8H2,1H3,(H,29,38)(H,28,30,31)/b3-2+/t18-,21-,22-,26-/m1/s1" 542 InChIKey InChI 1.03 NSQDVYXOGVOLPV-WKWRZTKWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 542 "SYSTEMATIC NAME" ACDLabs 10.04 "N-methyl-9-[(5E)-5,6,7-trideoxy-7-{[(4'-fluoro-4,5-dihydroxybiphenyl-3-yl)carbonyl]amino}-beta-D-ribo-hept-5-enofuranosyl]-9H-purin-6-amine" 542 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(E)-3-[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-methylaminopurin-9-yl)oxolan-2-yl]prop-2-enyl]-5-(4-fluorophenyl)-2,3-dihydroxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 542 "Create component" 2009-06-22 PDBJ 542 "Modify aromatic_flag" 2011-06-04 RCSB 542 "Modify descriptor" 2011-06-04 RCSB #