data_55V # _chem_comp.id 55V _chem_comp.name "6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2,4-Diamino-5-[3-(3,4,5-trimethoxyphenyl)pent-1-ynyl]-6-methylpyrimidine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-01-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 55V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FQC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 55V C1P C1P C 0 1 N N N -31.907 20.577 7.642 -1.702 -2.533 -2.509 C1P 55V 1 55V O1O O1O O 0 1 N N N -32.662 19.777 8.610 -2.745 -2.258 -1.571 O1O 55V 2 55V C1N C1N C 0 1 Y N N -31.908 18.954 9.411 -2.685 -1.070 -0.912 C1N 55V 3 55V C1M C1M C 0 1 Y N N -30.519 18.867 9.240 -1.648 -0.186 -1.167 C1M 55V 4 55V C1Q C1Q C 0 1 Y N N -32.545 18.196 10.409 -3.666 -0.738 0.015 C1Q 55V 5 55V O1V O1V O 0 1 N N N -33.926 18.234 10.577 -4.688 -1.601 0.265 O1V 55V 6 55V C1W C1W C 0 1 N N N -34.458 19.342 11.334 -4.489 -2.559 1.306 C1W 55V 7 55V C1R C1R C 0 1 Y N N -31.776 17.359 11.222 -3.600 0.477 0.686 C1R 55V 8 55V O1T O1T O 0 1 N N N -32.396 16.620 12.186 -4.558 0.806 1.594 O1T 55V 9 55V C1U C1U C 0 1 N N N -31.575 15.602 12.783 -4.427 2.071 2.246 C1U 55V 10 55V C1S C1S C 0 1 Y N N -30.389 17.289 11.041 -2.557 1.353 0.429 C1S 55V 11 55V C1L C1L C 0 1 Y N N -29.751 18.034 10.051 -1.586 1.022 -0.497 C1L 55V 12 55V C1J C1J C 0 1 N N N -28.216 17.942 9.874 -0.457 1.980 -0.778 C1J 55V 13 55V C1K C1K C 0 1 N N N -27.847 17.797 8.384 -0.480 2.376 -2.256 C1K 55V 14 55V C1X C1X C 0 1 N N N -27.582 19.188 10.482 -0.622 3.230 0.088 C1X 55V 15 55V C1I C1I C 0 1 N N N -27.643 16.710 10.454 0.826 1.331 -0.463 C1I 55V 16 55V C1H C1H C 0 1 N N N -27.221 15.626 10.868 1.850 0.814 -0.213 C1H 55V 17 55V C5 C5 C 0 1 Y N N -26.829 14.299 11.260 3.099 0.183 0.093 C5 55V 18 55V C4 C4 C 0 1 Y N N -27.473 13.212 10.660 3.142 -1.128 0.568 C4 55V 19 55V C1Y C1Y C 0 1 N N N -28.576 13.404 9.608 1.869 -1.910 0.768 C1Y 55V 20 55V N3 N3 N 0 1 Y N N -27.118 11.964 11.000 4.315 -1.676 0.839 N3 55V 21 55V C2 C2 C 0 1 Y N N -26.170 11.744 11.911 5.442 -1.000 0.668 C2 55V 22 55V N1Z N1Z N 0 1 N N N -25.840 10.501 12.231 6.645 -1.615 0.965 N1Z 55V 23 55V N1 N1 N 0 1 Y N N -25.541 12.772 12.494 5.451 0.246 0.219 N1 55V 24 55V C6 C6 C 0 1 Y N N -25.832 14.041 12.200 4.318 0.868 -0.082 C6 55V 25 55V N1G N1G N 0 1 N N N -25.151 14.993 12.829 4.333 2.168 -0.556 N1G 55V 26 55V H1P H1P H 0 1 N N N -31.718 21.577 8.060 -1.701 -1.767 -3.285 H1P 55V 27 55V H1PA H1PA H 0 0 N N N -30.948 20.083 7.426 -0.741 -2.531 -1.995 H1PA 55V 28 55V H1PB H1PB H 0 0 N N N -32.488 20.672 6.713 -1.870 -3.509 -2.963 H1PB 55V 29 55V H1M H1M H 0 1 N N N -30.039 19.453 8.470 -0.887 -0.441 -1.890 H1M 55V 30 55V H1W H1W H 0 1 N N N -34.593 19.039 12.383 -5.378 -3.183 1.401 H1W 55V 31 55V H1WA H1WA H 0 0 N N N -33.758 20.189 11.285 -3.630 -3.185 1.065 H1WA 55V 32 55V H1WB H1WB H 0 0 N N N -35.428 19.642 10.911 -4.308 -2.040 2.247 H1WB 55V 33 55V H1U H1U H 0 1 N N N -31.365 14.817 12.041 -5.253 2.208 2.943 H1U 55V 34 55V H1UA H1UA H 0 0 N N N -30.628 16.047 13.123 -3.483 2.102 2.791 H1UA 55V 35 55V H1UB H1UB H 0 0 N N N -32.103 15.162 13.642 -4.443 2.866 1.501 H1UB 55V 36 55V H1S H1S H 0 1 N N N -29.803 16.646 11.681 -2.505 2.297 0.950 H1S 55V 37 55V H1K H1K H 0 1 N N N -28.766 17.762 7.780 -1.430 2.856 -2.489 H1K 55V 38 55V H1KA H1KA H 0 0 N N N -27.236 18.657 8.072 0.337 3.069 -2.459 H1KA 55V 39 55V H1KB H1KB H 0 0 N N N -27.276 16.868 8.237 -0.362 1.485 -2.872 H1KB 55V 40 55V H1X H1X H 0 1 N N N -27.429 19.033 11.560 -0.606 2.948 1.141 H1X 55V 41 55V H1XA H1XA H 0 0 N N N -26.613 19.379 9.998 0.194 3.923 -0.115 H1XA 55V 42 55V H1XB H1XB H 0 0 N N N -28.247 20.051 10.326 -1.573 3.711 -0.145 H1XB 55V 43 55V H1Y H1Y H 0 1 N N N -29.555 13.450 10.107 1.623 -2.445 -0.149 H1Y 55V 44 55V H1YA H1YA H 0 0 N N N -28.400 14.341 9.059 2.005 -2.623 1.581 H1YA 55V 45 55V H1YB H1YB H 0 0 N N N -28.562 12.558 8.904 1.058 -1.225 1.017 H1YB 55V 46 55V HN1Z HN1Z H 0 0 N N N -25.757 9.953 11.399 6.654 -2.528 1.294 HN1Z 55V 47 55V HN1A HN1A H 0 0 N N N -24.966 10.503 12.717 7.478 -1.134 0.845 HN1A 55V 48 55V HN1G HN1G H 0 0 N N N -24.980 14.713 13.773 3.500 2.615 -0.770 HN1G 55V 49 55V HN1B HN1B H 0 0 N N N -24.279 15.142 12.363 5.177 2.631 -0.673 HN1B 55V 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 55V C1P O1O SING N N 1 55V C1P H1P SING N N 2 55V C1P H1PA SING N N 3 55V C1P H1PB SING N N 4 55V O1O C1N SING N N 5 55V C1M C1N DOUB Y N 6 55V C1N C1Q SING Y N 7 55V C1M C1L SING Y N 8 55V C1M H1M SING N N 9 55V C1Q O1V SING N N 10 55V C1Q C1R DOUB Y N 11 55V O1V C1W SING N N 12 55V C1W H1W SING N N 13 55V C1W H1WA SING N N 14 55V C1W H1WB SING N N 15 55V C1S C1R SING Y N 16 55V C1R O1T SING N N 17 55V O1T C1U SING N N 18 55V C1U H1U SING N N 19 55V C1U H1UA SING N N 20 55V C1U H1UB SING N N 21 55V C1L C1S DOUB Y N 22 55V C1S H1S SING N N 23 55V C1J C1L SING N N 24 55V C1K C1J SING N N 25 55V C1J C1I SING N N 26 55V C1J C1X SING N N 27 55V C1K H1K SING N N 28 55V C1K H1KA SING N N 29 55V C1K H1KB SING N N 30 55V C1X H1X SING N N 31 55V C1X H1XA SING N N 32 55V C1X H1XB SING N N 33 55V C1I C1H TRIP N N 34 55V C1H C5 SING N N 35 55V C4 C5 DOUB Y N 36 55V C5 C6 SING Y N 37 55V C1Y C4 SING N N 38 55V C4 N3 SING Y N 39 55V C1Y H1Y SING N N 40 55V C1Y H1YA SING N N 41 55V C1Y H1YB SING N N 42 55V N3 C2 DOUB Y N 43 55V C2 N1Z SING N N 44 55V C2 N1 SING Y N 45 55V N1Z HN1Z SING N N 46 55V N1Z HN1A SING N N 47 55V C6 N1 DOUB Y N 48 55V C6 N1G SING N N 49 55V N1G HN1G SING N N 50 55V N1G HN1B SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 55V SMILES ACDLabs 10.04 "C(#CC(c1cc(OC)c(OC)c(OC)c1)(C)C)c2c(nc(nc2C)N)N" 55V SMILES_CANONICAL CACTVS 3.341 "COc1cc(cc(OC)c1OC)C(C)(C)C#Cc2c(C)nc(N)nc2N" 55V SMILES CACTVS 3.341 "COc1cc(cc(OC)c1OC)C(C)(C)C#Cc2c(C)nc(N)nc2N" 55V SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(nc(n1)N)N)C#CC(C)(C)c2cc(c(c(c2)OC)OC)OC" 55V SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(nc(n1)N)N)C#CC(C)(C)c2cc(c(c(c2)OC)OC)OC" 55V InChI InChI 1.03 "InChI=1S/C19H24N4O3/c1-11-13(17(20)23-18(21)22-11)7-8-19(2,3)12-9-14(24-4)16(26-6)15(10-12)25-5/h9-10H,1-6H3,(H4,20,21,22,23)" 55V InChIKey InChI 1.03 FJNFXXGWYVMQNA-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 55V "SYSTEMATIC NAME" ACDLabs 10.04 "6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine" 55V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-ynyl]pyrimidine-2,4-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 55V "Create component" 2009-01-13 RCSB 55V "Modify aromatic_flag" 2011-06-04 RCSB 55V "Modify descriptor" 2011-06-04 RCSB 55V "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 55V _pdbx_chem_comp_synonyms.name "2,4-Diamino-5-[3-(3,4,5-trimethoxyphenyl)pent-1-ynyl]-6-methylpyrimidine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##