data_55X # _chem_comp.id 55X _chem_comp.name ;S-{1-[5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,7-dihydroxy-6,6-dimethyl-3-oxido-8,12 -dioxo-2,4-dioxa-9,13-diaza-3lambda~5~-phosphapentadecan-15-yl} (2S,6R)-6-[(8S,9S,10R,13R,14S,17R)-10,13-dimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta [a]phenanthren-17-yl]-2-methylheptanethioate (non-preferred name) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C48 H75 N7 O15 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;S-{1-[5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxi do-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (2S,6R)-6-[(8S,9S,10R,13R,14R,17S)-10,13-dimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta [a]phenanthren-17-yl]-2-methylheptanethioate (non-preferred name) ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-31 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1084.160 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 55X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5CW8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 55X C08 C1 C 0 1 N N N -31.843 3.080 142.806 -3.808 2.327 -1.077 C08 55X 1 55X S48 S1 S 0 1 N N N -30.560 2.248 143.812 -5.273 2.458 -2.131 S48 55X 2 55X C50 C2 C 0 1 N N N -29.238 2.237 142.667 -6.405 1.600 -1.175 C50 55X 3 55X C52 C3 C 0 1 N N S -27.873 2.632 143.236 -7.824 1.434 -1.654 C52 55X 4 55X C53 C4 C 0 1 N N N -27.115 3.421 142.167 -8.621 0.636 -0.621 C53 55X 5 55X C54 C5 C 0 1 N N N -26.381 4.621 142.769 -10.090 0.573 -1.047 C54 55X 6 55X C55 C6 C 0 1 N N N -25.657 5.340 141.624 -10.887 -0.225 -0.014 C55 55X 7 55X C56 C7 C 0 1 N N N -18.273 8.031 145.918 -19.500 -2.561 -0.535 C56 55X 8 55X C57 C8 C 0 1 N N N -16.867 8.118 146.539 -21.026 -2.478 -0.559 C57 55X 9 55X C60 C9 C 0 1 N N N -20.688 8.000 144.149 -16.658 -2.022 -0.697 C60 55X 10 55X C61 C10 C 0 1 N N N -21.415 4.628 141.668 -14.558 0.181 2.360 C61 55X 11 55X C62 C11 C 0 1 N N N -22.953 4.579 141.669 -13.096 -0.170 1.973 C62 55X 12 55X C63 C12 C 0 1 N N N -25.329 7.202 143.247 -12.475 -1.079 -1.743 C63 55X 13 55X C64 C13 C 0 1 N N R -24.656 6.373 142.149 -12.355 -0.287 -0.440 C64 55X 14 55X C65 C14 C 0 1 N N N -17.253 6.388 144.354 -19.642 -1.010 1.460 C65 55X 15 55X C66 C15 C 0 1 N N R -18.234 7.420 144.502 -18.888 -1.397 0.225 C66 55X 16 55X C67 C16 C 0 1 N N N -17.908 8.530 143.504 -18.857 -0.186 -0.710 C67 55X 17 55X C68 C17 C 0 1 N N R -22.169 6.534 142.798 -14.652 -0.991 0.276 C68 55X 18 55X C69 C18 C 0 1 N N N -21.967 7.394 141.539 -14.988 0.244 -0.562 C69 55X 19 55X C70 C19 C 0 1 N N N -16.163 6.905 146.440 -21.502 -2.456 0.880 C70 55X 20 55X O71 O1 O 0 1 N N N -15.305 6.608 147.270 -22.383 -3.192 1.272 O71 55X 21 55X C72 C20 C 0 1 N N N -18.733 4.918 143.092 -17.581 -0.405 2.694 C72 55X 22 55X C73 C21 C 0 1 N N S -19.732 6.036 142.967 -16.825 -0.565 1.371 C73 55X 23 55X C74 C22 C 0 1 N N S -19.648 6.868 144.234 -17.435 -1.734 0.584 C74 55X 24 55X C75 C23 C 0 1 N N S -21.128 5.453 142.911 -15.372 -0.907 1.649 C75 55X 25 55X C76 C24 C 0 1 N N R -23.407 5.650 142.683 -13.174 -0.977 0.653 C76 55X 26 55X C77 C25 C 0 1 N N N -22.093 7.396 144.045 -15.162 -2.239 -0.419 C77 55X 27 55X C58 C26 C 0 1 N N N -16.414 6.006 145.405 -20.842 -1.497 1.773 C58 55X 28 55X C59 C27 C 0 1 N N N -17.333 5.491 143.277 -19.025 0.008 2.401 C59 55X 29 55X O49 O2 O 0 1 N N N -29.363 1.941 141.479 -6.065 1.127 -0.111 O49 55X 30 55X C51 C28 C 0 1 N N N -27.091 1.366 143.588 -7.827 0.687 -2.989 C51 55X 31 55X H1 H1 H 0 1 N N N -32.805 2.572 142.966 -4.012 2.790 -0.111 H1 55X 32 55X H2 H2 H 0 1 N N N -31.924 4.128 143.129 -3.558 1.276 -0.930 H2 55X 33 55X H4 H4 H 0 1 N N N -28.007 3.252 144.135 -8.280 2.415 -1.786 H4 55X 34 55X H5 H5 H 0 1 N N N -27.831 3.781 141.414 -8.219 -0.375 -0.554 H5 55X 35 55X H6 H6 H 0 1 N N N -26.381 2.757 141.687 -8.545 1.122 0.351 H6 55X 36 55X H7 H7 H 0 1 N N N -25.652 4.278 143.518 -10.492 1.584 -1.114 H7 55X 37 55X H8 H8 H 0 1 N N N -27.102 5.303 143.244 -10.165 0.087 -2.020 H8 55X 38 55X H9 H9 H 0 1 N N N -26.402 5.852 140.997 -10.485 -1.236 0.053 H9 55X 39 55X H10 H10 H 0 1 N N N -25.118 4.596 141.020 -10.811 0.261 0.959 H10 55X 40 55X H11 H11 H 0 1 N N N -18.700 9.043 145.858 -19.202 -3.494 -0.056 H11 55X 41 55X H12 H12 H 0 1 N N N -18.908 7.403 146.560 -19.126 -2.552 -1.559 H12 55X 42 55X H13 H13 H 0 1 N N N -16.298 8.901 146.017 -21.339 -1.566 -1.068 H13 55X 43 55X H14 H14 H 0 1 N N N -16.966 8.384 147.602 -21.435 -3.348 -1.073 H14 55X 44 55X H15 H15 H 0 1 N N N -20.487 8.617 143.260 -17.066 -2.918 -1.166 H15 55X 45 55X H16 H16 H 0 1 N N N -20.624 8.626 145.051 -16.773 -1.180 -1.380 H16 55X 46 55X H17 H17 H 0 1 N N N -20.982 3.620 141.748 -14.696 0.122 3.440 H17 55X 47 55X H18 H18 H 0 1 N N N -21.031 5.121 140.763 -14.829 1.169 1.989 H18 55X 48 55X H19 H19 H 0 1 N N N -23.344 4.810 140.667 -12.520 0.743 1.819 H19 55X 49 55X H20 H20 H 0 1 N N N -23.304 3.584 141.980 -12.637 -0.775 2.755 H20 55X 50 55X H21 H21 H 0 1 N N N -24.618 7.948 143.632 -13.521 -1.124 -2.047 H21 55X 51 55X H22 H22 H 0 1 N N N -26.209 7.715 142.832 -11.891 -0.588 -2.522 H22 55X 52 55X H23 H23 H 0 1 N N N -25.643 6.539 144.066 -12.098 -2.091 -1.590 H23 55X 53 55X H24 H24 H 0 1 N N N -24.360 7.039 141.325 -12.732 0.724 -0.593 H24 55X 54 55X H26 H26 H 0 1 N N N -16.898 8.918 143.703 -18.360 0.645 -0.210 H26 55X 55 55X H27 H27 H 0 1 N N N -17.951 8.128 142.481 -18.313 -0.442 -1.618 H27 55X 56 55X H28 H28 H 0 1 N N N -18.640 9.344 143.609 -19.877 0.101 -0.966 H28 55X 57 55X H29 H29 H 0 1 N N N -21.068 8.016 141.659 -14.658 1.140 -0.037 H29 55X 58 55X H30 H30 H 0 1 N N N -21.846 6.739 140.663 -14.480 0.179 -1.524 H30 55X 59 55X H31 H31 H 0 1 N N N -22.844 8.042 141.393 -16.065 0.292 -0.723 H31 55X 60 55X H32 H32 H 0 1 N N N -18.990 4.295 143.961 -17.575 -1.352 3.233 H32 55X 61 55X H33 H33 H 0 1 N N N -18.758 4.303 142.180 -17.098 0.362 3.299 H33 55X 62 55X H34 H34 H 0 1 N N N -19.527 6.652 142.079 -16.895 0.353 0.789 H34 55X 63 55X H35 H35 H 0 1 N N N -19.922 6.224 145.082 -17.422 -2.622 1.215 H35 55X 64 55X H36 H36 H 0 1 N N N -21.314 4.847 143.810 -15.289 -1.854 2.182 H36 55X 65 55X H37 H37 H 0 1 N N N -23.629 5.180 143.652 -12.814 -1.994 0.810 H37 55X 66 55X H38 H38 H 0 1 N N N -22.838 8.203 143.981 -15.026 -3.106 0.227 H38 55X 67 55X H39 H39 H 0 1 N N N -22.296 6.779 144.933 -14.627 -2.386 -1.357 H39 55X 68 55X H40 H40 H 0 1 N N N -15.965 5.024 145.415 -21.330 -1.186 2.685 H40 55X 69 55X H42 H42 H 0 1 N N N -16.634 4.661 143.458 -19.035 0.992 1.931 H42 55X 70 55X H43 H43 H 0 1 N N N -17.045 6.020 142.356 -19.592 0.038 3.331 H43 55X 71 55X H44 H44 H 0 1 N N N -27.637 0.799 144.357 -7.371 -0.294 -2.858 H44 55X 72 55X H45 H45 H 0 1 N N N -26.975 0.745 142.688 -8.853 0.566 -3.336 H45 55X 73 55X H46 H46 H 0 1 N N N -26.098 1.643 143.973 -7.259 1.255 -3.726 H46 55X 74 55X C1 C29 C 0 1 N N N ? ? ? -2.632 3.042 -1.746 C1 55X 75 55X N1 N1 N 0 1 N N N ? ? ? -1.446 2.936 -0.893 N1 55X 76 55X C2 C30 C 0 1 N N N ? ? ? -0.284 3.496 -1.282 C2 55X 77 55X O1 O3 O 0 1 N N N ? ? ? -0.220 4.087 -2.339 O1 55X 78 55X C3 C31 C 0 1 N N N ? ? ? 0.936 3.387 -0.404 C3 55X 79 55X C4 C32 C 0 1 N N N ? ? ? 2.112 4.102 -1.074 C4 55X 80 55X N2 N2 N 0 1 N N N ? ? ? 3.298 3.996 -0.220 N2 55X 81 55X C5 C33 C 0 1 N N N ? ? ? 4.460 4.556 -0.610 C5 55X 82 55X O3 O4 O 0 1 N N N ? ? ? 4.550 5.068 -1.706 O3 55X 83 55X C7 C34 C 0 1 N N N ? ? ? 5.649 4.546 0.317 C7 55X 84 55X O2 O5 O 0 1 N N N ? ? ? 5.253 4.042 1.594 O2 55X 85 55X C6 C35 C 0 1 N N N ? ? ? 6.743 3.651 -0.268 C6 55X 86 55X C8 C36 C 0 1 N N N ? ? ? 7.894 3.531 0.733 C8 55X 87 55X C9 C37 C 0 1 N N N ? ? ? 6.168 2.262 -0.553 C9 55X 88 55X H3 H3 H 0 1 N N N ? ? ? -2.428 2.579 -2.712 H3 55X 89 55X H25 H25 H 0 1 N N N ? ? ? -2.882 4.093 -1.893 H25 55X 90 55X H41 H41 H 0 1 N N N ? ? ? -1.498 2.463 -0.047 H41 55X 91 55X H47 H47 H 0 1 N N N ? ? ? 0.732 3.850 0.561 H47 55X 92 55X H48 H48 H 0 1 N N N ? ? ? 1.186 2.336 -0.258 H48 55X 93 55X H49 H49 H 0 1 N N N ? ? ? 2.316 3.639 -2.039 H49 55X 94 55X H50 H50 H 0 1 N N N ? ? ? 1.862 5.153 -1.220 H50 55X 95 55X H51 H51 H 0 1 N N N ? ? ? 3.246 3.523 0.625 H51 55X 96 55X H52 H52 H 0 1 N N N ? ? ? 6.031 5.560 0.429 H52 55X 97 55X H53 H53 H 0 1 N N N ? ? ? 4.903 3.141 1.570 H53 55X 98 55X H55 H55 H 0 1 N N N ? ? ? 8.303 4.521 0.936 H55 55X 99 55X H56 H56 H 0 1 N N N ? ? ? 7.524 3.094 1.661 H56 55X 100 55X H58 H58 H 0 1 N N N ? ? ? 5.349 2.347 -1.266 H58 55X 101 55X H59 H59 H 0 1 N N N ? ? ? 6.948 1.624 -0.969 H59 55X 102 55X H60 H60 H 0 1 N N N ? ? ? 5.799 1.824 0.375 H60 55X 103 55X O4 O6 O 0 1 N N N ? ? ? 8.916 2.695 0.187 O4 55X 104 55X P1 P1 P 0 1 N N N ? ? ? 10.278 2.349 0.972 P1 55X 105 55X O7 O7 O 0 1 N N N ? ? ? 11.134 1.284 0.120 O7 55X 106 55X C13 C38 C 0 1 N N N ? ? ? 7.262 4.264 -1.570 C13 55X 107 55X O5 O8 O 0 1 N N N ? ? ? 11.140 3.695 1.169 O5 55X 108 55X O6 O9 O 0 1 N N N ? ? ? 9.953 1.774 2.296 O6 55X 109 55X H57 H57 H 0 1 N N N ? ? ? 7.567 5.295 -1.390 H57 55X 110 55X H61 H61 H 0 1 N N N ? ? ? 8.118 3.690 -1.927 H61 55X 111 55X H62 H62 H 0 1 N N N ? ? ? 6.473 4.245 -2.321 H62 55X 112 55X H63 H63 H 0 1 N N N ? ? ? 11.390 4.127 0.341 H63 55X 113 55X C10 C39 C 0 1 N N N ? ? ? 12.346 0.698 0.598 C10 55X 114 55X C11 C40 C 0 1 N N N ? ? ? 12.897 -0.264 -0.455 C11 55X 115 55X C12 C41 C 0 1 N N N ? ? ? 14.267 -0.806 -0.004 C12 55X 116 55X C14 C42 C 0 1 N N N ? ? ? 14.073 -2.342 0.040 C14 55X 117 55X C15 C43 C 0 1 N N N ? ? ? 12.844 -2.539 -0.884 C15 55X 118 55X O8 O10 O 0 1 N N N ? ? ? 12.017 -1.392 -0.595 O8 55X 119 55X H54 H54 H 0 1 N N N ? ? ? 13.077 1.483 0.791 H54 55X 120 55X H64 H64 H 0 1 N N N ? ? ? 12.147 0.153 1.520 H64 55X 121 55X H65 H65 H 0 1 N N N ? ? ? 12.999 0.250 -1.411 H65 55X 122 55X H66 H66 H 0 1 N N N ? ? ? 15.040 -0.540 -0.726 H66 55X 123 55X H68 H68 H 0 1 N N N ? ? ? 14.946 -2.856 -0.359 H68 55X 124 55X H70 H70 H 0 1 N N N ? ? ? 13.148 -2.540 -1.931 H70 55X 125 55X O10 O11 O 0 1 N N N ? ? ? 14.600 -0.307 1.293 O10 55X 126 55X O9 O12 O 0 1 N N N ? ? ? 13.787 -2.781 1.369 O9 55X 127 55X N3 N3 N 0 1 Y N N ? ? ? 12.141 -3.780 -0.549 N3 55X 128 55X P2 P2 P 0 1 N N N ? ? ? 15.913 0.580 1.581 P2 55X 129 55X O13 O13 O 0 1 N N N ? ? ? 17.229 -0.307 1.314 O13 55X 130 55X O11 O14 O 0 1 N N N ? ? ? 15.920 1.756 0.682 O11 55X 131 55X O12 O15 O 0 1 N N N ? ? ? 15.901 1.075 3.112 O12 55X 132 55X H67 H67 H 0 1 N N N ? ? ? 13.656 -3.736 1.448 H67 55X 133 55X H73 H73 H 0 1 N N N ? ? ? 17.291 -1.097 1.869 H73 55X 134 55X H74 H74 H 0 1 N N N ? ? ? 16.664 1.616 3.357 H74 55X 135 55X C16 C44 C 0 1 Y N N ? ? ? 11.065 -3.899 0.280 C16 55X 136 55X N4 N4 N 0 1 Y N N ? ? ? 10.694 -5.144 0.351 N4 55X 137 55X C19 C45 C 0 1 Y N N ? ? ? 11.506 -5.902 -0.424 C19 55X 138 55X C20 C46 C 0 1 Y N N ? ? ? 12.441 -5.035 -1.015 C20 55X 139 55X H69 H69 H 0 1 N N N ? ? ? 10.590 -3.080 0.800 H69 55X 140 55X N5 N5 N 0 1 Y N N ? ? ? 13.361 -5.537 -1.833 N5 55X 141 55X C18 C48 C 0 1 Y N N ? ? ? 13.399 -6.828 -2.087 C18 55X 142 55X N6 N6 N 0 1 Y N N ? ? ? 12.542 -7.681 -1.556 N6 55X 143 55X C22 C50 C 0 1 Y N N ? ? ? 11.585 -7.271 -0.730 C22 55X 144 55X H75 H75 H 0 1 N N N ? ? ? 14.159 -7.204 -2.756 H75 55X 145 55X N7 N7 N 0 1 N N N ? ? ? 10.692 -8.173 -0.178 N7 55X 146 55X H71 H71 H 0 1 N N N ? ? ? 10.760 -9.116 -0.392 H71 55X 147 55X H72 H72 H 0 1 N N N ? ? ? 9.998 -7.861 0.424 H72 55X 148 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 55X O49 C50 DOUB N N 1 55X C69 C68 SING N N 2 55X C55 C64 SING N N 3 55X C55 C54 SING N N 4 55X C61 C62 SING N N 5 55X C61 C75 SING N N 6 55X C62 C76 SING N N 7 55X C64 C76 SING N N 8 55X C64 C63 SING N N 9 55X C53 C54 SING N N 10 55X C53 C52 SING N N 11 55X C50 C52 SING N N 12 55X C50 S48 SING N N 13 55X C76 C68 SING N N 14 55X C68 C75 SING N N 15 55X C68 C77 SING N N 16 55X C08 S48 SING N N 17 55X C75 C73 SING N N 18 55X C73 C72 SING N N 19 55X C73 C74 SING N N 20 55X C72 C59 SING N N 21 55X C52 C51 SING N N 22 55X C59 C65 SING N N 23 55X C67 C66 SING N N 24 55X C77 C60 SING N N 25 55X C60 C74 SING N N 26 55X C74 C66 SING N N 27 55X C65 C66 SING N N 28 55X C65 C58 DOUB N N 29 55X C66 C56 SING N N 30 55X C58 C70 SING N N 31 55X C56 C57 SING N N 32 55X C70 C57 SING N N 33 55X C70 O71 DOUB N N 34 55X C08 H1 SING N N 35 55X C08 H2 SING N N 36 55X C52 H4 SING N N 37 55X C53 H5 SING N N 38 55X C53 H6 SING N N 39 55X C54 H7 SING N N 40 55X C54 H8 SING N N 41 55X C55 H9 SING N N 42 55X C55 H10 SING N N 43 55X C56 H11 SING N N 44 55X C56 H12 SING N N 45 55X C57 H13 SING N N 46 55X C57 H14 SING N N 47 55X C60 H15 SING N N 48 55X C60 H16 SING N N 49 55X C61 H17 SING N N 50 55X C61 H18 SING N N 51 55X C62 H19 SING N N 52 55X C62 H20 SING N N 53 55X C63 H21 SING N N 54 55X C63 H22 SING N N 55 55X C63 H23 SING N N 56 55X C64 H24 SING N N 57 55X C67 H26 SING N N 58 55X C67 H27 SING N N 59 55X C67 H28 SING N N 60 55X C69 H29 SING N N 61 55X C69 H30 SING N N 62 55X C69 H31 SING N N 63 55X C72 H32 SING N N 64 55X C72 H33 SING N N 65 55X C73 H34 SING N N 66 55X C74 H35 SING N N 67 55X C75 H36 SING N N 68 55X C76 H37 SING N N 69 55X C77 H38 SING N N 70 55X C77 H39 SING N N 71 55X C58 H40 SING N N 72 55X C59 H42 SING N N 73 55X C59 H43 SING N N 74 55X C51 H44 SING N N 75 55X C51 H45 SING N N 76 55X C51 H46 SING N N 77 55X C08 C1 SING N N 78 55X C1 N1 SING N N 79 55X N1 C2 SING N N 80 55X C2 O1 DOUB N N 81 55X C2 C3 SING N N 82 55X C3 C4 SING N N 83 55X C4 N2 SING N N 84 55X N2 C5 SING N N 85 55X C5 O3 DOUB N N 86 55X C5 C7 SING N N 87 55X C7 O2 SING N N 88 55X C7 C6 SING N N 89 55X C6 C8 SING N N 90 55X C6 C9 SING N N 91 55X C1 H3 SING N N 92 55X C1 H25 SING N N 93 55X N1 H41 SING N N 94 55X C3 H47 SING N N 95 55X C3 H48 SING N N 96 55X C4 H49 SING N N 97 55X C4 H50 SING N N 98 55X N2 H51 SING N N 99 55X C7 H52 SING N N 100 55X O2 H53 SING N N 101 55X C8 H55 SING N N 102 55X C8 H56 SING N N 103 55X C9 H58 SING N N 104 55X C9 H59 SING N N 105 55X C9 H60 SING N N 106 55X C8 O4 SING N N 107 55X O4 P1 SING N N 108 55X P1 O7 SING N N 109 55X C6 C13 SING N N 110 55X P1 O5 SING N N 111 55X P1 O6 DOUB N N 112 55X C13 H57 SING N N 113 55X C13 H61 SING N N 114 55X C13 H62 SING N N 115 55X O5 H63 SING N N 116 55X O7 C10 SING N N 117 55X C10 C11 SING N N 118 55X C11 C12 SING N N 119 55X C12 C14 SING N N 120 55X C14 C15 SING N N 121 55X C15 O8 SING N N 122 55X O8 C11 SING N N 123 55X C10 H54 SING N N 124 55X C10 H64 SING N N 125 55X C11 H65 SING N N 126 55X C12 H66 SING N N 127 55X C14 H68 SING N N 128 55X C15 H70 SING N N 129 55X C12 O10 SING N N 130 55X C14 O9 SING N N 131 55X C15 N3 SING N N 132 55X O10 P2 SING N N 133 55X P2 O13 SING N N 134 55X P2 O11 DOUB N N 135 55X P2 O12 SING N N 136 55X O9 H67 SING N N 137 55X O13 H73 SING N N 138 55X O12 H74 SING N N 139 55X N3 C16 SING Y N 140 55X C16 N4 DOUB Y N 141 55X N4 C19 SING Y N 142 55X C19 C20 DOUB Y N 143 55X C20 N3 SING Y N 144 55X C16 H69 SING N N 145 55X C20 N5 SING Y N 146 55X N5 C18 DOUB Y N 147 55X C18 N6 SING Y N 148 55X N6 C22 DOUB Y N 149 55X C22 C19 SING Y N 150 55X C18 H75 SING N N 151 55X C22 N7 SING N N 152 55X N7 H71 SING N N 153 55X N7 H72 SING N N 154 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 55X SMILES ACDLabs 12.01 "C(SC(C(C)CCCC(C)C4CCC3C4(CCC2C1(CCC(=O)C=C1CCC23)C)C)=O)CNC(=O)CCNC(=O)C(O)C(COP(OCC5C(C(C(O5)n6cnc7c6ncnc7N)O)OP(O)(=O)O)(O)=O)(C)C" 55X InChI InChI 1.03 "InChI=1S/C48H75N7O15P2S/c1-27(32-12-13-33-31-11-10-29-22-30(56)14-17-47(29,5)34(31)15-18-48(32,33)6)8-7-9-28(2)45(61)73-21-20-50-36(57)16-19-51-43(60)40(59)46(3,4)24-68-72(65,66)67-23-35-39(70-71(62,63)64)38(58)44(69-35)55-26-54-37-41(49)52-25-53-42(37)55/h22,25-28,31-35,38-40,44,58-59H,7-21,23-24H2,1-6H3,(H,50,57)(H,51,60)(H,65,66)(H2,49,52,53)(H2,62,63,64)/t27-,28+,31+,32-,33+,34+,35?,38?,39?,40?,44?,47+,48-/m1/s1" 55X InChIKey InChI 1.03 VHFLMCCTKSGQAT-YKQRDCBHSA-N 55X SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCC[C@H](C)C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)CO[P](O)(=O)OCC1OC(C(O)C1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@H]4CC[C@H]5[C@@H]6CCC7=CC(=O)CC[C@]7(C)[C@H]6CC[C@]45C" 55X SMILES CACTVS 3.385 "C[CH](CCC[CH](C)C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)CO[P](O)(=O)OCC1OC(C(O)C1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH]4CC[CH]5[CH]6CCC7=CC(=O)CC[C]7(C)[CH]6CC[C]45C" 55X SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@H](CCC[C@H](C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)[C@H]4CC[C@@H]5[C@@]4(CC[C@H]6[C@H]5CCC7=CC(=O)CC[C@]67C)C" 55X SMILES "OpenEye OEToolkits" 1.9.2 "CC(CCCC(C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)C4CCC5C4(CCC6C5CCC7=CC(=O)CCC67C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 55X "SYSTEMATIC NAME" ACDLabs 12.01 "S-{1-[5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,7-dihydroxy-6,6-dimethyl-3-oxido-8,12-dioxo-2,4-dioxa-9,13-diaza-3lambda~5~-phosphapentadecan-15-yl} (2S,6R)-6-[(8S,9S,10R,13R,14S,17R)-10,13-dimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2-methylheptanethioate (non-preferred name)" 55X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "S-[2-[3-[[4-[[5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (2S,6R)-6-[(8S,9S,10R,13R,14S,17R)-10,13-dimethyl-3-oxidanylidene-1,2,6,7,8,9,11,12,14,15,16,17-dodecahydrocyclopenta[a]phenanthren-17-yl]-2-methyl-heptanethioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 55X "Create component" 2015-07-31 RCSB 55X "Other modification" 2015-09-16 RCSB 55X "Initial release" 2016-02-17 RCSB 55X "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 55X _pdbx_chem_comp_synonyms.name "S-{1-[5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (2S,6R)-6-[(8S,9S,10R,13R,14R,17S)-10,13-dimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]-2-methylheptanethioate (non-preferred name)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##