data_560 # _chem_comp.id 560 _chem_comp.name "5-[(3R)-3-{7-[4-(aminomethyl)phenyl]-2H-1,3-benzodioxol-5-yl}but-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-16 _chem_comp.pdbx_modified_date 2022-05-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.488 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 560 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7RGJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 560 C4 C1 C 0 1 Y N N 50.759 11.707 2.968 -5.286 -0.977 0.315 C4 560 1 560 C5 C2 C 0 1 Y N N 51.511 11.431 1.842 -4.129 -0.330 -0.121 C5 560 2 560 C6 C3 C 0 1 Y N N 51.546 12.352 0.793 -4.166 0.337 -1.362 C6 560 3 560 N1 N1 N 0 1 Y N N 50.870 13.490 0.879 -5.293 0.323 -2.064 N1 560 4 560 N3 N2 N 0 1 Y N N 50.092 12.869 3.013 -6.368 -0.942 -0.446 N3 560 5 560 C2 C4 C 0 1 Y N N 50.145 13.718 1.972 -6.367 -0.305 -1.608 C2 560 6 560 CAG C5 C 0 1 N N N 52.252 10.218 1.738 -2.937 -0.343 0.672 CAG 560 7 560 CAH C6 C 0 1 N N N 52.909 9.213 1.574 -1.959 -0.353 1.322 CAH 560 8 560 CAI C7 C 0 1 N N R 53.751 8.047 1.266 -0.734 -0.367 2.137 CAI 560 9 560 CAJ C8 C 0 1 N N N 53.685 7.710 -0.217 -1.016 0.282 3.493 CAJ 560 10 560 CAK C9 C 0 1 Y N N 53.543 6.942 2.082 0.350 0.404 1.427 CAK 560 11 560 CAL C10 C 0 1 Y N N 52.288 6.455 2.396 1.526 -0.227 1.080 CAL 560 12 560 CAM C11 C 0 1 Y N N 52.204 5.330 3.220 2.530 0.482 0.423 CAM 560 13 560 CAN C12 C 0 1 Y N N 50.920 4.870 3.536 3.796 -0.194 0.048 CAN 560 14 560 CAO C13 C 0 1 Y N N 50.713 3.686 4.237 4.498 -0.939 0.993 CAO 560 15 560 CAP C14 C 0 1 Y N N 49.438 3.246 4.555 5.675 -1.566 0.639 CAP 560 16 560 CAQ C15 C 0 1 Y N N 48.339 3.996 4.168 6.158 -1.457 -0.653 CAQ 560 17 560 CAR C16 C 0 1 N N N 47.064 3.543 4.498 7.444 -2.145 -1.034 CAR 560 18 560 CAT C17 C 0 1 Y N N 48.523 5.184 3.465 5.466 -0.719 -1.596 CAT 560 19 560 CAU C18 C 0 1 Y N N 49.810 5.620 3.155 4.285 -0.091 -1.253 CAU 560 20 560 CAV C19 C 0 1 Y N N 53.321 4.751 3.712 2.341 1.832 0.119 CAV 560 21 560 CAX C20 C 0 1 N N N 54.841 3.741 4.979 2.601 4.030 -0.166 CAX 560 22 560 CAZ C21 C 0 1 Y N N 54.527 5.235 3.396 1.150 2.458 0.474 CAZ 560 23 560 CBA C22 C 0 1 Y N N 54.649 6.294 2.601 0.158 1.740 1.122 CBA 560 24 560 CBC C23 C 0 1 N N N 50.683 10.835 4.065 -5.302 -1.710 1.631 CBC 560 25 560 CBD C24 C 0 1 N N N 51.587 11.317 5.188 -4.877 -3.163 1.410 CBD 560 26 560 NAA N3 N 0 1 N N N 49.457 14.858 2.050 -7.523 -0.296 -2.369 NAA 560 27 560 NAE N4 N 0 1 N N N 52.278 12.098 -0.287 -3.047 0.994 -1.841 NAE 560 28 560 NAS N5 N 0 1 N N N 46.495 2.697 3.441 7.148 -3.499 -1.521 NAS 560 29 560 OAW O1 O 0 1 N N N 53.475 3.662 4.522 3.144 2.740 -0.505 OAW 560 30 560 OAY O2 O 0 1 N N N 55.524 4.502 3.967 1.207 3.762 0.072 OAY 560 31 560 H1 H1 H 0 1 N N N 54.787 8.375 1.440 -0.408 -1.396 2.287 H1 560 32 560 H2 H2 H 0 1 N N N 54.321 6.837 -0.424 -1.800 -0.275 4.007 H2 560 33 560 H3 H3 H 0 1 N N N 52.646 7.481 -0.495 -0.108 0.272 4.097 H3 560 34 560 H4 H4 H 0 1 N N N 54.040 8.569 -0.804 -1.341 1.312 3.343 H4 560 35 560 H5 H5 H 0 1 N N N 51.397 6.931 2.015 1.670 -1.271 1.317 H5 560 36 560 H6 H6 H 0 1 N N N 51.566 3.096 4.540 4.122 -1.025 2.002 H6 560 37 560 H7 H7 H 0 1 N N N 49.302 2.324 5.101 6.220 -2.144 1.371 H7 560 38 560 H8 H8 H 0 1 N N N 46.406 4.411 4.652 7.940 -1.577 -1.821 H8 560 39 560 H9 H9 H 0 1 N N N 47.123 2.959 5.428 8.095 -2.206 -0.163 H9 560 40 560 H10 H10 H 0 1 N N N 47.667 5.768 3.160 5.848 -0.636 -2.602 H10 560 41 560 H11 H11 H 0 1 N N N 49.947 6.546 2.616 3.745 0.485 -1.990 H11 560 42 560 H12 H12 H 0 1 N N N 55.278 2.736 5.069 3.075 4.421 0.735 H12 560 43 560 H13 H13 H 0 1 N N N 54.895 4.253 5.951 2.723 4.727 -0.995 H13 560 44 560 H14 H14 H 0 1 N N N 55.636 6.657 2.355 -0.768 2.226 1.394 H14 560 45 560 H15 H15 H 0 1 N N N 49.645 10.797 4.426 -4.609 -1.230 2.322 H15 560 46 560 H16 H16 H 0 1 N N N 50.999 9.829 3.751 -6.308 -1.685 2.049 H16 560 47 560 H17 H17 H 0 1 N N N 51.516 10.624 6.039 -5.570 -3.643 0.719 H17 560 48 560 H18 H18 H 0 1 N N N 52.627 11.354 4.831 -3.871 -3.188 0.992 H18 560 49 560 H19 H19 H 0 1 N N N 51.272 12.322 5.506 -4.888 -3.694 2.362 H19 560 50 560 H20 H20 H 0 1 N N N 49.606 15.395 1.220 -7.538 0.166 -3.222 H20 560 51 560 H21 H21 H 0 1 N N N 48.483 14.653 2.145 -8.317 -0.751 -2.049 H21 560 52 560 H22 H22 H 0 1 N N N 52.206 12.863 -0.927 -3.082 1.450 -2.696 H22 560 53 560 H23 H23 H 0 1 N N N 53.234 11.976 -0.020 -2.228 0.999 -1.322 H23 560 54 560 H24 H24 H 0 1 N N N 45.582 2.392 3.713 6.494 -3.473 -2.289 H24 560 55 560 H25 H25 H 0 1 N N N 46.432 3.222 2.592 7.995 -3.982 -1.783 H25 560 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 560 NAE C6 SING N N 1 560 CAJ CAI SING N N 2 560 C6 N1 DOUB Y N 3 560 C6 C5 SING Y N 4 560 N1 C2 SING Y N 5 560 CAI CAH SING N N 6 560 CAI CAK SING N N 7 560 CAH CAG TRIP N N 8 560 CAG C5 SING N N 9 560 C5 C4 DOUB Y N 10 560 C2 NAA SING N N 11 560 C2 N3 DOUB Y N 12 560 CAK CAL DOUB Y N 13 560 CAK CBA SING Y N 14 560 CAL CAM SING Y N 15 560 CBA CAZ DOUB Y N 16 560 C4 N3 SING Y N 17 560 C4 CBC SING N N 18 560 CAU CAT DOUB Y N 19 560 CAU CAN SING Y N 20 560 CAM CAN SING N N 21 560 CAM CAV DOUB Y N 22 560 CAZ CAV SING Y N 23 560 CAZ OAY SING N N 24 560 NAS CAR SING N N 25 560 CAT CAQ SING Y N 26 560 CAN CAO DOUB Y N 27 560 CAV OAW SING N N 28 560 OAY CAX SING N N 29 560 CBC CBD SING N N 30 560 CAQ CAR SING N N 31 560 CAQ CAP DOUB Y N 32 560 CAO CAP SING Y N 33 560 OAW CAX SING N N 34 560 CAI H1 SING N N 35 560 CAJ H2 SING N N 36 560 CAJ H3 SING N N 37 560 CAJ H4 SING N N 38 560 CAL H5 SING N N 39 560 CAO H6 SING N N 40 560 CAP H7 SING N N 41 560 CAR H8 SING N N 42 560 CAR H9 SING N N 43 560 CAT H10 SING N N 44 560 CAU H11 SING N N 45 560 CAX H12 SING N N 46 560 CAX H13 SING N N 47 560 CBA H14 SING N N 48 560 CBC H15 SING N N 49 560 CBC H16 SING N N 50 560 CBD H17 SING N N 51 560 CBD H18 SING N N 52 560 CBD H19 SING N N 53 560 NAA H20 SING N N 54 560 NAA H21 SING N N 55 560 NAE H22 SING N N 56 560 NAE H23 SING N N 57 560 NAS H24 SING N N 58 560 NAS H25 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 560 SMILES ACDLabs 12.01 "CCc1nc(N)nc(N)c1C#CC(C)c1cc2OCOc2c(c1)c1ccc(CN)cc1" 560 InChI InChI 1.03 "InChI=1S/C24H25N5O2/c1-3-20-18(23(26)29-24(27)28-20)9-4-14(2)17-10-19(22-21(11-17)30-13-31-22)16-7-5-15(12-25)6-8-16/h5-8,10-11,14H,3,12-13,25H2,1-2H3,(H4,26,27,28,29)/t14-/m0/s1" 560 InChIKey InChI 1.03 IIAMZXQFRCVQRC-AWEZNQCLSA-N 560 SMILES_CANONICAL CACTVS 3.385 "CCc1nc(N)nc(N)c1C#C[C@H](C)c2cc3OCOc3c(c2)c4ccc(CN)cc4" 560 SMILES CACTVS 3.385 "CCc1nc(N)nc(N)c1C#C[CH](C)c2cc3OCOc3c(c2)c4ccc(CN)cc4" 560 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(n1)N)N)C#C[C@H](C)c2cc(c3c(c2)OCO3)c4ccc(cc4)CN" 560 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(n1)N)N)C#CC(C)c2cc(c3c(c2)OCO3)c4ccc(cc4)CN" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 560 "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(3R)-3-{7-[4-(aminomethyl)phenyl]-2H-1,3-benzodioxol-5-yl}but-1-yn-1-yl]-6-ethylpyrimidine-2,4-diamine" 560 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(3~{R})-3-[7-[4-(aminomethyl)phenyl]-1,3-benzodioxol-5-yl]but-1-ynyl]-6-ethyl-pyrimidine-2,4-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 560 "Create component" 2021-07-16 RCSB 560 "Initial release" 2022-05-25 RCSB ##