data_57D # _chem_comp.id 57D _chem_comp.name chrysin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H10 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5,7-dihydroxy-2-phenyl-4H-chromen-4-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-09-01 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 254.237 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 57D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EBO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 57D C2 C2 C 0 1 N N N 38.008 34.818 29.228 -1.145 -0.185 0.009 C2 57D 1 57D C3 C3 C 0 1 N N N 37.126 34.262 30.162 -0.723 -1.477 0.008 C3 57D 2 57D C4 C4 C 0 1 N N N 36.925 34.899 31.389 0.666 -1.757 0.010 C4 57D 3 57D C5 C5 C 0 1 Y N N 37.628 36.080 31.663 1.589 -0.610 0.013 C5 57D 4 57D C6 C6 C 0 1 Y N N 37.532 36.736 32.895 2.977 -0.793 0.013 C6 57D 5 57D C7 C7 C 0 1 Y N N 38.263 37.900 33.125 3.809 0.312 0.015 C7 57D 6 57D C8 C8 C 0 1 Y N N 39.107 38.405 32.141 3.270 1.593 0.016 C8 57D 7 57D C9 C9 C 0 1 Y N N 39.226 37.752 30.925 1.896 1.782 0.016 C9 57D 8 57D C10 C10 C 0 1 Y N N 38.493 36.589 30.690 1.046 0.687 0.014 C10 57D 9 57D O1 O1 O 0 1 N N N 38.666 35.986 29.487 -0.294 0.853 0.012 O1 57D 10 57D O4 O4 O 0 1 N N N 36.145 34.418 32.216 1.081 -2.905 0.009 O4 57D 11 57D O5 O5 O 0 1 N N N 36.719 36.281 33.890 3.502 -2.044 0.013 O5 57D 12 57D O7 O7 O 0 1 N N N 39.820 39.538 32.369 4.096 2.671 0.018 O7 57D 13 57D "C2'" C2* C 0 1 Y N N 38.683 35.041 26.923 -3.064 1.403 0.003 "C2'" 57D 14 57D "C3'" C3* C 0 1 Y N N 38.982 34.475 25.686 -4.421 1.650 -0.005 "C3'" 57D 15 57D "C4'" C4* C 0 1 Y N N 38.889 33.096 25.512 -5.319 0.597 -0.014 "C4'" 57D 16 57D "C5'" C5* C 0 1 Y N N 38.496 32.282 26.576 -4.863 -0.709 -0.015 "C5'" 57D 17 57D "C6'" C6* C 0 1 Y N N 38.201 32.846 27.816 -3.508 -0.971 -0.008 "C6'" 57D 18 57D "C1'" C1* C 0 1 Y N N 38.277 34.231 27.991 -2.597 0.087 0.002 "C1'" 57D 19 57D H3 H3 H 0 1 N N N 36.603 33.345 29.935 -1.440 -2.283 0.006 H3 57D 20 57D H7 H7 H 0 1 N N N 38.174 38.412 34.072 4.881 0.179 0.016 H7 57D 21 57D H9 H9 H 0 1 N N N 39.884 38.142 30.162 1.488 2.782 0.018 H9 57D 22 57D HO5 HO5 H 0 1 N N N 37.223 36.175 34.688 3.654 -2.406 -0.871 HO5 57D 23 57D HO7 HO7 H 0 1 N N N 39.987 39.626 33.300 4.336 2.984 -0.865 HO7 57D 24 57D "H2'" H2* H 0 1 N N N 38.765 36.109 27.059 -2.364 2.226 0.005 "H2'" 57D 25 57D "H3'" H3* H 0 1 N N N 39.286 35.105 24.863 -4.783 2.667 -0.004 "H3'" 57D 26 57D "H4'" H4* H 0 1 N N N 39.121 32.656 24.553 -6.380 0.796 -0.020 "H4'" 57D 27 57D "H5'" H5* H 0 1 N N N 38.420 31.214 26.438 -5.569 -1.526 -0.021 "H5'" 57D 28 57D "H6'" H6* H 0 1 N N N 37.914 32.213 28.642 -3.154 -1.991 -0.008 "H6'" 57D 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 57D C2 C3 DOUB N N 1 57D C2 O1 SING N N 2 57D C2 "C1'" SING N N 3 57D C3 C4 SING N N 4 57D C4 C5 SING N N 5 57D C4 O4 DOUB N N 6 57D C5 C6 DOUB Y N 7 57D C5 C10 SING Y N 8 57D C6 C7 SING Y N 9 57D C6 O5 SING N N 10 57D C7 C8 DOUB Y N 11 57D C8 C9 SING Y N 12 57D C8 O7 SING N N 13 57D C9 C10 DOUB Y N 14 57D C10 O1 SING N N 15 57D "C2'" "C3'" DOUB Y N 16 57D "C2'" "C1'" SING Y N 17 57D "C3'" "C4'" SING Y N 18 57D "C4'" "C5'" DOUB Y N 19 57D "C5'" "C6'" SING Y N 20 57D "C6'" "C1'" DOUB Y N 21 57D C3 H3 SING N N 22 57D C7 H7 SING N N 23 57D C9 H9 SING N N 24 57D O5 HO5 SING N N 25 57D O7 HO7 SING N N 26 57D "C2'" "H2'" SING N N 27 57D "C3'" "H3'" SING N N 28 57D "C4'" "H4'" SING N N 29 57D "C5'" "H5'" SING N N 30 57D "C6'" "H6'" SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 57D SMILES ACDLabs 10.04 "O=C1c3c(OC(=C1)c2ccccc2)cc(O)cc3O" 57D SMILES_CANONICAL CACTVS 3.341 "Oc1cc(O)c2C(=O)C=C(Oc2c1)c3ccccc3" 57D SMILES CACTVS 3.341 "Oc1cc(O)c2C(=O)C=C(Oc2c1)c3ccccc3" 57D SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C2=CC(=O)c3c(cc(cc3O2)O)O" 57D SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C2=CC(=O)c3c(cc(cc3O2)O)O" 57D InChI InChI 1.03 "InChI=1S/C15H10O4/c16-10-6-11(17)15-12(18)8-13(19-14(15)7-10)9-4-2-1-3-5-9/h1-8,16-17H" 57D InChIKey InChI 1.03 RTIXKCRFFJGDFG-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 57D "SYSTEMATIC NAME" ACDLabs 10.04 "5,7-dihydroxy-2-phenyl-4H-chromen-4-one" 57D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5,7-dihydroxy-2-phenyl-chromen-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 57D "Create component" 2008-09-01 PDBJ 57D "Modify aromatic_flag" 2011-06-04 RCSB 57D "Modify descriptor" 2011-06-04 RCSB 57D "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 57D _pdbx_chem_comp_synonyms.name "5,7-dihydroxy-2-phenyl-4H-chromen-4-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##