data_58M # _chem_comp.id 58M _chem_comp.name "TUNGSTOPTERIN COFACTOR" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N10 O12 P2 S4 W" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge ? _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2026-08-07 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 970.512 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 58M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details MetalCoord _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AOR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? _chem_comp.pdbx_comp_type "metal-containing ligand" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 58M C1 C1 C 0 1 N N N N N N 19.385 0.936 -25.911 20.226 1.600 -25.733 C1 58M 1 58M C2 C2 C 0 1 N N R N N N 20.398 0.457 -24.879 20.680 0.467 -24.812 C2 58M 2 58M C3 C3 C 0 1 N N N N N N 19.958 0.491 -23.407 20.082 0.547 -23.417 C3 58M 3 58M S3 S3 S -1 1 N N N N N N 18.313 0.649 -22.976 18.420 0.444 -23.182 S3 58M 4 58M C4 C4 C 0 1 N N N N N N 20.840 0.813 -22.401 20.853 0.698 -22.324 C4 58M 5 58M S4 S4 S -1 1 N N N N N N 20.162 1.467 -20.908 20.143 0.965 -20.832 S4 58M 6 58M W1 W1 W ? 1 N N N N N N 17.887 1.297 -20.712 17.794 1.103 -20.939 W1 58M 7 58M C5 C5 C 0 1 N N R N N N 22.324 1.133 -22.732 22.381 0.593 -22.364 C5 58M 8 58M N6 N6 N 0 1 N N N N N N 22.852 2.496 -22.518 22.983 1.877 -22.001 N6 58M 9 58M C7 C7 C 0 1 N N N N N N 24.154 2.725 -22.762 24.215 2.295 -22.477 C7 58M 10 58M C8 C8 C 0 1 N N N N N N 24.930 3.713 -22.086 24.846 3.490 -21.972 C8 58M 11 58M O8 O8 O 0 1 N N N N N N 24.385 4.634 -21.215 24.385 4.221 -21.101 O8 58M 12 58M N9 N9 N 0 1 N N N N N N 26.259 3.751 -22.221 26.082 3.785 -22.536 N9 58M 13 58M C10 C10 C 0 1 N N N N N N 26.862 3.014 -23.186 26.650 3.007 -23.505 C10 58M 14 58M N10 N10 N 0 1 N N N N N N 28.168 3.146 -23.491 27.834 3.377 -23.985 N10 58M 15 58M N11 N11 N 0 1 N N N N N N 26.142 2.147 -23.945 26.071 1.902 -23.983 N11 58M 16 58M C12 C12 C 0 1 N N N N N N 24.826 1.912 -23.722 24.870 1.539 -23.468 C12 58M 17 58M N13 N13 N 0 1 N N N N N N 24.148 0.954 -24.402 24.295 0.420 -23.990 N13 58M 18 58M C14 C14 C 0 1 N N R N N N 22.736 0.621 -24.143 22.909 0.049 -23.728 C14 58M 19 58M O2 O2 O 0 1 N N N N N N 21.681 0.988 -24.983 22.120 0.543 -24.826 O2 58M 20 58M C21 C21 C 0 1 N N N N N N 18.982 5.855 -22.743 18.779 5.699 -23.302 C21 58M 21 58M C22 C22 C 0 1 N N R N N N 17.519 5.833 -22.288 17.502 5.667 -22.462 C22 58M 22 58M C23 C23 C 0 1 N N N N N N 17.168 4.454 -21.706 17.165 4.276 -21.947 C23 58M 23 58M S23 S23 S -1 1 N N N N N N 18.189 3.620 -20.559 18.194 3.474 -20.887 S23 58M 24 58M C24 C24 C 0 1 N N N N N N 16.111 3.721 -22.262 16.042 3.638 -22.320 C24 58M 25 58M S24 S24 S -1 1 N N N N N N 16.037 2.008 -21.983 15.833 2.029 -21.913 S24 58M 26 58M C25 C25 C 0 1 N N R N N N 15.286 4.232 -23.449 14.899 4.336 -23.067 C25 58M 27 58M N26 N26 N 0 1 N N N N N N 15.654 3.865 -24.830 14.706 3.721 -24.382 N26 58M 28 58M C27 C27 C 0 1 N N N N N N 14.844 4.482 -25.713 14.211 4.416 -25.473 C27 58M 29 58M C28 C28 C 0 1 N N N N N N 14.462 3.913 -26.959 13.873 3.737 -26.700 C28 58M 30 58M O28 O28 O 0 1 N N N N N N 14.929 2.704 -27.378 13.969 2.529 -26.892 O28 58M 31 58M N29 N29 N 0 1 N N N N N N 13.572 4.505 -27.768 13.383 4.558 -27.710 N29 58M 32 58M C30 C30 C 0 1 N N N N N N 13.053 5.726 -27.464 13.246 5.909 -27.555 C30 58M 33 58M N30 N30 N 0 1 N N N N N N 12.126 6.363 -28.214 12.774 6.608 -28.584 N30 58M 34 58M N31 N31 N 0 1 N N N N N N 13.417 6.335 -26.305 13.565 6.547 -26.426 N31 58M 35 58M C32 C32 C 0 1 N N N N N N 14.255 5.762 -25.429 14.033 5.811 -25.388 C32 58M 36 58M N33 N33 N 0 1 N N N N N N 14.493 6.416 -24.285 14.366 6.493 -24.257 N33 58M 37 58M C34 C34 C 0 1 N N R N N N 15.167 5.750 -23.170 15.096 5.882 -23.151 C34 58M 38 58M O22 O22 O 0 1 N N N N N N 16.524 6.057 -23.235 16.484 6.224 -23.317 O22 58M 39 58M P1 P1 P 0 1 N N N N N N 20.032 1.891 -28.159 20.133 2.142 -28.313 P1 58M 40 58M O1P O1P O 0 1 N N N N N N 20.874 3.179 -27.728 20.442 3.643 -28.130 O1P 58M 41 58M O2P O2P O 0 1 N N N N N N 20.970 1.486 -29.349 20.956 1.672 -29.530 O2P 58M 42 58M O3P O3P O 0 1 N N N N N N 18.669 2.253 -28.579 18.676 1.878 -28.481 O3P 58M 43 58M O4P O4P O 0 1 N N N N N N 20.137 0.777 -27.089 20.737 1.401 -27.065 O4P 58M 44 58M P2 P2 P 0 1 N N N N N N 20.374 7.281 -24.188 20.551 7.478 -24.112 P2 58M 45 58M O5P O5P O 0 1 N N N N N N 20.154 6.457 -25.512 20.851 6.741 -25.433 O5P 58M 46 58M O6P O6P O 0 1 N N N N N N 20.603 8.800 -24.551 20.468 8.979 -24.458 O6P 58M 47 58M O7P O7P O 0 1 N N N N N N 21.638 6.760 -23.601 21.568 7.196 -23.059 O7P 58M 48 58M O8P O8P O 0 1 N N N N N N 19.228 7.152 -23.267 19.102 7.052 -23.672 O8P 58M 49 58M H11 H11 H 0 1 N N N N N N 18.481 0.309 -25.917 20.548 2.455 -25.374 H11 58M 50 58M H12 H12 H 0 1 N N N N N N 19.102 1.986 -25.747 19.245 1.629 -25.754 H12 58M 51 58M H2 H2 H 0 1 N N N N N N 20.510 -0.616 -25.095 20.394 -0.397 -25.212 H2 58M 52 58M H5 H5 H 0 1 N N N N N N 22.896 0.498 -22.040 22.649 -0.071 -21.678 H5 58M 53 58M H6 H6 H 0 1 N N N N N N 22.329 3.111 -23.107 22.560 2.409 -21.457 H6 58M 54 58M H9 H9 H 0 1 N N N N N N 26.808 4.322 -21.611 26.509 4.503 -22.258 H9 58M 55 58M H101 H101 H 0 0 N N N N N N 28.561 2.619 -24.244 28.227 2.899 -24.608 H101 58M 56 58M H102 H102 H 0 0 N N N N N N 28.744 3.771 -22.964 28.231 4.101 -23.685 H102 58M 57 58M H13 H13 H 0 1 N N N N N N 24.195 1.217 -25.366 24.789 -0.102 -24.506 H13 58M 58 58M H14 H14 H 0 1 N N N N N N 22.702 -0.476 -24.063 22.858 -0.939 -23.719 H14 58M 59 58M H211 H211 H 0 0 N N N N N N 19.647 5.659 -21.889 18.648 5.152 -24.107 H211 58M 60 58M H212 H212 H 0 0 N N N N N N 19.149 5.094 -23.520 19.517 5.308 -22.786 H212 58M 61 58M H22 H22 H 0 1 N N N N N N 17.417 6.567 -21.475 17.628 6.259 -21.673 H22 58M 62 58M H25 H25 H 0 1 N N N N N N 14.274 3.832 -23.291 14.072 4.190 -22.541 H25 58M 63 58M H26 H26 H 0 1 N N N N N N 16.600 4.140 -25.003 14.903 2.881 -24.495 H26 58M 64 58M H29 H29 H 0 1 N N N N N N 13.285 4.043 -28.607 13.158 4.190 -28.477 H29 58M 65 58M H301 H301 H 0 0 N N N N N N 11.747 7.235 -27.905 12.675 7.478 -28.518 H301 58M 66 58M H302 H302 H 0 0 N N N N N N 11.820 5.962 -29.077 12.560 6.207 -29.336 H302 58M 67 58M H33 H33 H 0 1 N N N N N N 15.051 7.212 -24.522 14.123 7.341 -24.194 H33 58M 68 58M H34 H34 H 0 1 N N N N N N 14.699 5.953 -22.195 14.767 6.291 -22.312 H34 58M 69 58M HOP2 HOP2 H 0 0 N N N N N N 20.489 1.543 -30.166 20.806 0.811 -29.673 HOP2 58M 70 58M HOP6 HOP6 H 0 0 N N N N N N 21.489 9.051 -24.319 20.295 9.442 -23.722 HOP6 58M 71 58M H1 H1 H 0 1 N N N N N N 20.335 3.956 -27.822 21.309 3.750 -27.986 H1 58M 72 58M H3 H3 H 0 1 N N N N N N 20.864 5.836 -25.621 20.199 6.896 -26.013 H3 58M 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_metal_coordination_flag _chem_comp_bond.pdbx_metal_pi_flag 58M C1 C2 SING N N 1 N N 58M C1 O4P SING N N 2 N N 58M C1 H11 SING N N 3 N N 58M C1 H12 SING N N 4 N N 58M C2 C3 SING N N 5 N N 58M C2 O2 SING N N 6 N N 58M C2 H2 SING N N 7 N N 58M C3 S3 SING N N 8 N N 58M C3 C4 DOUB N N 9 N N 58M C4 S4 SING N N 10 N N 58M C4 C5 SING N N 11 N N 58M S4 W1 SING N N 12 Y N 58M C5 N6 SING N N 13 N N 58M C5 C14 SING N N 14 N N 58M C5 H5 SING N N 15 N N 58M N6 C7 SING N N 16 N N 58M N6 H6 SING N N 17 N N 58M C7 C8 SING N N 18 N N 58M C7 C12 DOUB N N 19 N N 58M C8 O8 DOUB N N 20 N N 58M C8 N9 SING N N 21 N N 58M N9 C10 SING N N 22 N N 58M N9 H9 SING N N 23 N N 58M C10 N10 SING N N 24 N N 58M C10 N11 DOUB N N 25 N N 58M N10 H101 SING N N 26 N N 58M N10 H102 SING N N 27 N N 58M N11 C12 SING N N 28 N N 58M C12 N13 SING N N 29 N N 58M N13 C14 SING N N 30 N N 58M N13 H13 SING N N 31 N N 58M C14 O2 SING N N 32 N N 58M C14 H14 SING N N 33 N N 58M C21 C22 SING N N 34 N N 58M C21 O8P SING N N 35 N N 58M C21 H211 SING N N 36 N N 58M C21 H212 SING N N 37 N N 58M C22 C23 SING N N 38 N N 58M C22 O22 SING N N 39 N N 58M C22 H22 SING N N 40 N N 58M C23 S23 SING N N 41 N N 58M C23 C24 DOUB N N 42 N N 58M C24 S24 SING N N 43 N N 58M C24 C25 SING N N 44 N N 58M C25 N26 SING N N 45 N N 58M C25 C34 SING N N 46 N N 58M C25 H25 SING N N 47 N N 58M N26 C27 SING N N 48 N N 58M N26 H26 SING N N 49 N N 58M C27 C28 SING N N 50 N N 58M C27 C32 DOUB N N 51 N N 58M C28 O28 DOUB N N 52 N N 58M C28 N29 SING N N 53 N N 58M N29 C30 SING N N 54 N N 58M N29 H29 SING N N 55 N N 58M C30 N30 SING N N 56 N N 58M C30 N31 DOUB N N 57 N N 58M N30 H301 SING N N 58 N N 58M N30 H302 SING N N 59 N N 58M N31 C32 SING N N 60 N N 58M C32 N33 SING N N 61 N N 58M N33 C34 SING N N 62 N N 58M N33 H33 SING N N 63 N N 58M C34 O22 SING N N 64 N N 58M C34 H34 SING N N 65 N N 58M P1 O1P SING N N 66 N N 58M P1 O2P SING N N 67 N N 58M P1 O3P DOUB N N 68 N N 58M P1 O4P SING N N 69 N N 58M O2P HOP2 SING N N 70 N N 58M P2 O5P SING N N 71 N N 58M P2 O6P SING N N 72 N N 58M P2 O7P DOUB N N 73 N N 58M P2 O8P SING N N 74 N N 58M O6P HOP6 SING N N 75 N N 58M W1 S3 SING N N 76 Y N 58M W1 S23 SING N N 77 Y N 58M W1 S24 SING N N 78 Y N 58M O1P H1 SING N N 79 N N 58M O5P H3 SING N N 80 N N # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 58M SMILES ACDLabs 14.52 "O=P(O)(O)OCC1OC2NC=3N=C(N)NC(=O)C=3NC2C=2S[W]3(SC=4C(OC5NC=6N=C(N)NC(=O)C=6NC5C=4S3)COP(=O)(O)O)SC=21" 58M InChI InChI 1.06 "InChI=1S/2C10H14N5O6PS2.W/c2*11-10-14-7-4(8(16)15-10)12-3-6(24)5(23)2(21-9(3)13-7)1-20-22(17,18)19;/h2*2-3,9,12,23-24H,1H2,(H2,17,18,19)(H4,11,13,14,15,16);/q;;+4/p-4/t2*2-,3+,9-;/m11./s1" 58M InChIKey InChI 1.06 DJVBEHSDJJEGHJ-GQTKXDLLSA-J 58M SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(N[C@@H]3[C@H](N2)O[C@H](CO[P](O)(O)=O)C4=C3S[W]5(S4)SC6=C(S5)[C@@H]7NC8=C(N[C@@H]7O[C@@H]6CO[P](O)(O)=O)N=C(N)NC8=O)C(=O)N1" 58M SMILES CACTVS 3.385 "NC1=NC2=C(N[CH]3[CH](N2)O[CH](CO[P](O)(O)=O)C4=C3S[W]5(S4)SC6=C(S5)[CH]7NC8=C(N[CH]7O[CH]6CO[P](O)(O)=O)N=C(N)NC8=O)C(=O)N1" 58M SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C([C@@H]1C2=C([C@H]3[C@@H](O1)NC4=C(N3)C(=O)NC(=N4)N)S[W]5(S2)SC6=C(S5)[C@H]7[C@H](NC8=C(N7)C(=O)NC(=N8)N)O[C@@H]6COP(=O)(O)O)OP(=O)(O)O" 58M SMILES "OpenEye OEToolkits" 3.1.0.0 "C(C1C2=C(C3C(O1)NC4=C(N3)C(=O)NC(=N4)N)S[W]5(S2)SC6=C(S5)C7C(NC8=C(N7)C(=O)NC(=N8)N)OC6COP(=O)(O)O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 58M "SYSTEMATIC NAME" ACDLabs 14.52 "bis[(5aR,8R,9aR)-2-amino-4-oxo-8-[(phosphonooxy)methyl]-3,5,5a,8,9a,10-hexahydro-4H-pyrano[3,2-g]pteridine-6,7-bis(thiolato)-kappa~2~S~6~,S~7~]tungsten" 58M "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 ;[(1~{R},1'~{R},10~{R},10'~{R},16~{R},16'~{R})-5,5'-bis(azanyl)-7,7'-bis(oxidanylidene)-16'-(phosphonooxymethyl)-13,13'-spirobi[17-oxa-12,14-dithia-2,4,6,9-tetraza-13$l^{4}-tungstatetracyclo[8.7.0.0^{3,8}.0^{11,15}]heptadeca-3(8),4,11(15)-triene]-16-yl]methyl dihydrogen phosphate ; # loop_ _pdbx_chem_comp_atom_coordination.geometry_id _pdbx_chem_comp_atom_coordination.comp_id _pdbx_chem_comp_atom_coordination.atom_id _pdbx_chem_comp_atom_coordination.number _pdbx_chem_comp_atom_coordination.geometry_calculated _pdbx_chem_comp_atom_coordination.geometry_generic _pdbx_chem_comp_atom_coordination.geometry_abbr _pdbx_chem_comp_atom_coordination.provenance _pdbx_chem_comp_atom_coordination.representative_entry_id 1 58M W1 4 square-non-planar "square non-planar" SNP MetalCoord 1AOR 2 58M W1 6 trigonal-prism "trigonal prismatic" TRP MetalCoord 6X1O # loop_ _pdbx_chem_comp_atom_coordination_sphere.id _pdbx_chem_comp_atom_coordination_sphere.geometry_id _pdbx_chem_comp_atom_coordination_sphere.comp_id _pdbx_chem_comp_atom_coordination_sphere.atom_id _pdbx_chem_comp_atom_coordination_sphere.descriptor _pdbx_chem_comp_atom_coordination_sphere.provenance _pdbx_chem_comp_atom_coordination_sphere.representative_entry_id 1 1 58M W1 "@SNP{W,S,S,S,S}" MetalCoord 1AOR 2 2 58M W1 "@TRP{W,O,O,S,S,S,S}" MetalCoord 6X1O # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 58M "Create component" 2026-05-19 RCSB 58M "Other modification" 2026-07-31 RCSB 58M "Initial release" 2026-08-12 RCSB #