data_5A2 # _chem_comp.id 5A2 _chem_comp.name "3,5-di-methylenebisphosphonate inositol tetrakisphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H24 O28 P8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "{[(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-28 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 816.049 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5A2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DGI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5A2 C1 C1 C 0 1 N N N 1.428 20.265 10.250 -0.098 2.144 0.602 C1 5A2 1 5A2 C2 C2 C 0 1 N N R -0.026 20.038 9.808 1.230 1.627 0.044 C2 5A2 2 5A2 C3 C3 C 0 1 N N R -0.917 19.730 11.032 1.354 0.129 0.332 C3 5A2 3 5A2 C4 C4 C 0 1 N N N -0.864 20.900 12.034 0.196 -0.616 -0.334 C4 5A2 4 5A2 C5 C5 C 0 1 N N S 0.569 21.123 12.502 -1.131 -0.099 0.224 C5 5A2 5 5A2 C6 C6 C 0 1 N N R 1.522 21.366 11.324 -1.256 1.399 -0.064 C6 5A2 6 5A2 O55 O1 O 0 1 N N N -2.084 23.973 16.602 -6.933 -3.797 -0.768 O55 5A2 7 5A2 PB5 P1 P 0 1 N N N -0.771 24.073 15.927 -5.786 -3.268 0.231 PB5 5A2 8 5A2 O65 O2 O 0 1 N N N -0.986 24.477 14.522 -6.400 -2.434 1.289 O65 5A2 9 5A2 O75 O3 O 0 1 N N N 0.140 24.862 16.786 -5.040 -4.526 0.904 O75 5A2 10 5A2 C5B C7 C 0 1 N N N -0.193 22.347 15.939 -4.579 -2.273 -0.704 C5B 5A2 11 5A2 PA5 P2 P 0 1 N N N 1.257 22.163 14.872 -3.280 -1.674 0.427 PA5 5A2 12 5A2 O35 O4 O 0 1 N N N 1.816 20.805 15.065 -2.533 -2.931 1.100 O35 5A2 13 5A2 O25 O5 O 0 1 N N N 2.127 23.349 15.052 -3.893 -0.840 1.485 O25 5A2 14 5A2 O15 O6 O 0 1 N N N 0.609 22.258 13.387 -2.213 -0.795 -0.398 O15 5A2 15 5A2 O14 O7 O 0 1 N N N -1.663 20.598 13.185 0.312 -2.015 -0.065 O14 5A2 16 5A2 PA4 P3 P 0 1 N N N -3.110 21.269 13.485 0.465 -3.121 -1.224 PA4 5A2 17 5A2 O34 O8 O 0 1 N N N -3.355 22.338 12.308 -0.655 -2.988 -2.183 O34 5A2 18 5A2 O44 O9 O 0 1 N N N -3.017 22.004 14.760 1.861 -2.902 -1.995 O44 5A2 19 5A2 O24 O10 O 0 1 N N N -4.113 20.192 13.364 0.438 -4.592 -0.570 O24 5A2 20 5A2 O16 O11 O 0 1 N N N 2.853 21.402 11.846 -2.496 1.882 0.456 O16 5A2 21 5A2 PA6 P4 P 0 1 N N N 3.816 22.667 11.654 -3.629 2.560 -0.465 PA6 5A2 22 5A2 O36 O12 O 0 1 N N N 4.562 22.347 10.425 -3.987 1.637 -1.565 O36 5A2 23 5A2 O46 O13 O 0 1 N N N 2.934 23.846 11.585 -4.935 2.864 0.427 O46 5A2 24 5A2 O26 O14 O 0 1 N N N 4.615 22.567 12.898 -3.068 3.937 -1.081 O26 5A2 25 5A2 O11 O15 O 0 1 N N N 2.219 20.656 9.096 -0.214 3.543 0.333 O11 5A2 26 5A2 PA1 P5 P 0 1 N N N 3.465 19.789 8.537 -0.366 4.649 1.492 PA1 5A2 27 5A2 O41 O16 O 0 1 N N N 2.956 18.411 8.436 -1.763 4.430 2.263 O41 5A2 28 5A2 O21 O17 O 0 1 N N N 3.804 20.453 7.262 0.753 4.516 2.451 O21 5A2 29 5A2 O31 O18 O 0 1 N N N 4.495 19.965 9.593 -0.340 6.120 0.838 O31 5A2 30 5A2 O12 O19 O 0 1 N N N -0.510 21.219 9.128 1.271 1.845 -1.367 O12 5A2 31 5A2 PA2 P6 P 0 1 N N N -1.065 21.249 7.630 2.395 2.750 -2.082 PA2 5A2 32 5A2 O42 O20 O 0 1 N N N -2.496 20.970 7.788 3.837 2.060 -1.898 O42 5A2 33 5A2 O22 O21 O 0 1 N N N -0.686 22.600 7.207 2.059 2.883 -3.651 O22 5A2 34 5A2 O32 O22 O 0 1 N N N -0.326 20.171 6.937 2.410 4.096 -1.465 O32 5A2 35 5A2 O13 O23 O 0 1 N N N -2.278 19.510 10.605 2.594 -0.354 -0.189 O13 5A2 36 5A2 PA3 P7 P 0 1 N N N -2.802 18.064 10.050 3.727 -1.032 0.733 PA3 5A2 37 5A2 O23 O24 O 0 1 N N N -1.710 16.941 10.492 3.166 -2.409 1.349 O23 5A2 38 5A2 O33 O25 O 0 1 N N N -2.975 18.080 8.581 4.085 -0.109 1.833 O33 5A2 39 5A2 C3B C8 C 0 1 N N N -4.321 17.734 10.980 5.206 -1.376 -0.277 C3B 5A2 40 5A2 PB3 P8 P 0 1 N N N -5.644 18.783 10.438 6.489 -2.143 0.766 PB3 5A2 41 5A2 O53 O26 O 0 1 N N N -5.359 19.061 9.023 5.973 -3.409 1.333 O53 5A2 42 5A2 O63 O27 O 0 1 N N N -6.837 17.971 10.714 7.794 -2.447 -0.125 O63 5A2 43 5A2 O73 O28 O 0 1 N N N -5.485 19.960 11.314 6.878 -1.139 1.963 O73 5A2 44 5A2 H1 H1 H 0 1 N N N 1.820 19.327 10.671 -0.130 1.978 1.678 H1 5A2 45 5A2 H2 H2 H 0 1 N N N -0.056 19.175 9.127 2.055 2.158 0.518 H2 5A2 46 5A2 H3 H3 H 0 1 N N N -0.530 18.827 11.527 1.323 -0.038 1.409 H3 5A2 47 5A2 H4 H4 H 0 1 N N N -1.230 21.812 11.540 0.228 -0.450 -1.410 H4 5A2 48 5A2 H5 H5 H 0 1 N N N 0.905 20.224 13.039 -1.163 -0.266 1.301 H5 5A2 49 5A2 H6 H6 H 0 1 N N N 1.271 22.331 10.860 -1.224 1.566 -1.141 H6 5A2 50 5A2 H7 H7 H 0 1 N N N -2.774 24.190 15.986 -7.612 -4.335 -0.338 H7 5A2 51 5A2 H8 H8 H 0 1 N N N 0.500 25.585 16.286 -4.614 -5.117 0.268 H8 5A2 52 5A2 H9 H9 H 0 1 N N N -0.998 21.692 15.574 -4.127 -2.887 -1.483 H9 5A2 53 5A2 H10 H10 H 0 1 N N N 0.074 22.061 16.967 -5.084 -1.422 -1.159 H10 5A2 54 5A2 H11 H11 H 0 1 N N N 2.735 20.870 15.298 -2.107 -3.523 0.465 H11 5A2 55 5A2 H12 H12 H 0 1 N N N -3.122 22.934 14.598 2.640 -2.976 -1.427 H12 5A2 56 5A2 H13 H13 H 0 1 N N N -4.679 20.368 12.621 0.525 -5.310 -1.212 H13 5A2 57 5A2 H14 H14 H 0 1 N N N 2.988 24.232 10.719 -5.660 3.273 -0.064 H14 5A2 58 5A2 H15 H15 H 0 1 N N N 5.503 22.305 12.684 -2.813 4.591 -0.415 H15 5A2 59 5A2 H16 H16 H 0 1 N N N 2.923 18.151 7.523 -2.541 4.504 1.695 H16 5A2 60 5A2 H17 H17 H 0 1 N N N 5.211 20.489 9.253 -0.427 6.838 1.480 H17 5A2 61 5A2 H18 H18 H 0 1 N N N -2.698 20.124 7.407 3.900 1.173 -2.279 H18 5A2 62 5A2 H19 H19 H 0 1 N N N -0.011 22.546 6.541 2.697 3.416 -4.146 H19 5A2 63 5A2 H20 H20 H 0 1 N N N -1.381 16.497 9.719 2.911 -3.063 0.683 H20 5A2 64 5A2 H21 H21 H 0 1 N N N -4.612 16.684 10.831 4.942 -2.056 -1.087 H21 5A2 65 5A2 H22 H22 H 0 1 N N N -4.134 17.915 12.049 5.586 -0.444 -0.694 H22 5A2 66 5A2 H23 H23 H 0 1 N N N -7.260 17.740 9.895 8.520 -2.857 0.366 H23 5A2 67 5A2 H24 H24 H 0 1 N N N -5.219 20.709 10.794 7.225 -0.287 1.665 H24 5A2 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5A2 O32 PA2 DOUB N N 1 5A2 O22 PA2 SING N N 2 5A2 O21 PA1 DOUB N N 3 5A2 PA2 O42 SING N N 4 5A2 PA2 O12 SING N N 5 5A2 O41 PA1 SING N N 6 5A2 PA1 O11 SING N N 7 5A2 PA1 O31 SING N N 8 5A2 O33 PA3 DOUB N N 9 5A2 O53 PB3 DOUB N N 10 5A2 O11 C1 SING N N 11 5A2 O12 C2 SING N N 12 5A2 C2 C1 SING N N 13 5A2 C2 C3 SING N N 14 5A2 PA3 O23 SING N N 15 5A2 PA3 O13 SING N N 16 5A2 PA3 C3B SING N N 17 5A2 C1 C6 SING N N 18 5A2 O36 PA6 DOUB N N 19 5A2 PB3 O63 SING N N 20 5A2 PB3 C3B SING N N 21 5A2 PB3 O73 SING N N 22 5A2 O13 C3 SING N N 23 5A2 C3 C4 SING N N 24 5A2 C6 O16 SING N N 25 5A2 C6 C5 SING N N 26 5A2 O46 PA6 SING N N 27 5A2 PA6 O16 SING N N 28 5A2 PA6 O26 SING N N 29 5A2 C4 C5 SING N N 30 5A2 C4 O14 SING N N 31 5A2 O34 PA4 DOUB N N 32 5A2 C5 O15 SING N N 33 5A2 O14 PA4 SING N N 34 5A2 O24 PA4 SING N N 35 5A2 O15 PA5 SING N N 36 5A2 PA4 O44 SING N N 37 5A2 O65 PB5 DOUB N N 38 5A2 PA5 O25 DOUB N N 39 5A2 PA5 O35 SING N N 40 5A2 PA5 C5B SING N N 41 5A2 PB5 C5B SING N N 42 5A2 PB5 O55 SING N N 43 5A2 PB5 O75 SING N N 44 5A2 C1 H1 SING N N 45 5A2 C2 H2 SING N N 46 5A2 C3 H3 SING N N 47 5A2 C4 H4 SING N N 48 5A2 C5 H5 SING N N 49 5A2 C6 H6 SING N N 50 5A2 O55 H7 SING N N 51 5A2 O75 H8 SING N N 52 5A2 C5B H9 SING N N 53 5A2 C5B H10 SING N N 54 5A2 O35 H11 SING N N 55 5A2 O44 H12 SING N N 56 5A2 O24 H13 SING N N 57 5A2 O46 H14 SING N N 58 5A2 O26 H15 SING N N 59 5A2 O41 H16 SING N N 60 5A2 O31 H17 SING N N 61 5A2 O42 H18 SING N N 62 5A2 O22 H19 SING N N 63 5A2 O23 H20 SING N N 64 5A2 C3B H21 SING N N 65 5A2 C3B H22 SING N N 66 5A2 O63 H23 SING N N 67 5A2 O73 H24 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5A2 SMILES ACDLabs 12.01 "C1(C(C(C(C(C1OP(O)(O)=O)OP(O)(CP(O)(O)=O)=O)OP(O)(=O)O)OP(CP(O)(O)=O)(=O)O)OP(O)(=O)O)OP(O)(O)=O" 5A2 InChI InChI 1.03 "InChI=1S/C8H24O28P8/c9-37(10,11)1-39(15,16)31-3-5(33-41(19,20)21)4(32-40(17,18)2-38(12,13)14)7(35-43(25,26)27)8(36-44(28,29)30)6(3)34-42(22,23)24/h3-8H,1-2H2,(H,15,16)(H,17,18)(H2,9,10,11)(H2,12,13,14)(H2,19,20,21)(H2,22,23,24)(H2,25,26,27)(H2,28,29,30)/t3-,4+,5-,6-,7-,8-/m1/s1" 5A2 InChIKey InChI 1.03 WDYISGXURTYYJP-XAZAIFFQSA-N 5A2 SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)C[P](O)(=O)O[C@@H]1[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(=O)C[P](O)(O)=O)[C@H]1O[P](O)(O)=O" 5A2 SMILES CACTVS 3.385 "O[P](O)(=O)C[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(=O)C[P](O)(O)=O)[CH]1O[P](O)(O)=O" 5A2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(P(=O)(O)O)P(=O)(O)O[C@@H]1[C@H](C([C@@H]([C@@H](C1OP(=O)(O)O)OP(=O)(CP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" 5A2 SMILES "OpenEye OEToolkits" 1.9.2 "C(P(=O)(O)O)P(=O)(O)OC1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(CP(=O)(O)O)O)OP(=O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5A2 "SYSTEMATIC NAME" ACDLabs 12.01 "{[(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)" 5A2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[oxidanyl-[(1S,3R,4R,6R)-3-[oxidanyl(phosphonomethyl)phosphoryl]oxy-2,4,5,6-tetraphosphonooxy-cyclohexyl]oxy-phosphoryl]methylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5A2 "Create component" 2015-08-28 RCSB 5A2 "Modify synonyms" 2015-08-31 RCSB 5A2 "Initial release" 2016-08-10 RCSB 5A2 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5A2 _pdbx_chem_comp_synonyms.name "{[(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##