data_5A3 # _chem_comp.id 5A3 _chem_comp.name "Methylenebisphosphonate inositol pentakisphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H21 O26 P7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 738.042 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5A3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DGH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5A3 O31 O1 O 0 1 N N N 3.947 20.583 7.046 -3.535 -2.936 2.421 O31 5A3 1 5A3 C2 C1 C 0 1 N N N 0.049 20.077 9.814 -2.402 -0.040 0.253 C2 5A3 2 5A3 C1 C2 C 0 1 N N S 1.579 20.198 10.088 -1.578 -1.268 0.644 C1 5A3 3 5A3 C4 C3 C 0 1 N N S -0.414 20.774 12.207 -0.299 1.264 -0.088 C4 5A3 4 5A3 C5 C4 C 0 1 N N N 1.075 20.929 12.458 0.526 0.036 0.304 C5 5A3 5 5A3 C6 C5 C 0 1 N N R 1.909 21.177 11.221 -0.234 -1.234 -0.086 C6 5A3 6 5A3 C3 C6 C 0 1 N N R -0.723 19.751 11.097 -1.643 1.229 0.642 C3 5A3 7 5A3 O11 O2 O 0 1 N N N 2.251 20.697 8.918 -2.287 -2.454 0.281 O11 5A3 8 5A3 O75 O3 O 0 1 N N N 2.239 24.403 17.253 6.240 -1.209 1.068 O75 5A3 9 5A3 PB5 P1 P 0 1 N N N 3.518 23.605 16.619 6.152 0.032 0.045 PB5 5A3 10 5A3 O55 O4 O 0 1 N N N 4.753 24.640 16.538 6.271 1.301 0.798 O55 5A3 11 5A3 O65 O5 O 0 1 N N N 3.871 22.371 17.381 7.348 -0.070 -1.027 O65 5A3 12 5A3 CB5 C7 C 0 1 N N N 3.162 23.221 14.851 4.550 -0.010 -0.825 CB5 5A3 13 5A3 PA5 P2 P 0 1 N N N 1.758 21.943 14.720 3.196 0.105 0.390 PA5 5A3 14 5A3 O25 O6 O 0 1 N N N 2.257 20.423 15.092 3.277 -1.035 1.330 O25 5A3 15 5A3 O35 O7 O 0 1 N N N 0.670 22.393 15.798 3.325 1.485 1.209 O35 5A3 16 5A3 O15 O8 O 0 1 N N N 1.189 22.068 13.230 1.781 0.068 -0.378 O15 5A3 17 5A3 O16 O9 O 0 1 N N N 3.320 21.058 11.573 0.536 -2.381 0.280 O16 5A3 18 5A3 PA6 P3 P 0 1 N N N 4.372 22.300 11.417 1.041 -3.475 -0.788 PA6 5A3 19 5A3 O46 O10 O 0 1 N N N 5.010 22.025 10.106 -0.117 -3.994 -1.548 O46 5A3 20 5A3 O36 O11 O 0 1 N N N 3.601 23.550 11.508 2.087 -2.791 -1.803 O36 5A3 21 5A3 O26 O12 O 0 1 N N N 5.253 22.080 12.589 1.762 -4.688 -0.013 O26 5A3 22 5A3 PA1 P4 P 0 1 N N N 3.420 19.809 8.200 -2.735 -3.571 1.350 PA1 5A3 23 5A3 O41 O13 O 0 1 N N N 4.623 19.737 9.287 -1.426 -4.255 1.992 O41 5A3 24 5A3 O21 O14 O 0 1 N N N 2.801 18.471 7.964 -3.621 -4.695 0.613 O21 5A3 25 5A3 O12 O15 O 0 1 N N N -0.461 21.299 9.235 -2.627 -0.047 -1.159 O12 5A3 26 5A3 PA2 P5 P 0 1 N N N -0.923 21.383 7.682 -4.097 -0.086 -1.813 PA2 5A3 27 5A3 O42 O16 O 0 1 N N N -0.202 20.307 6.971 -4.903 1.037 -1.283 O42 5A3 28 5A3 O22 O17 O 0 1 N N N -2.379 21.227 7.762 -3.977 0.048 -3.413 O22 5A3 29 5A3 O32 O18 O 0 1 N N N -0.463 22.742 7.359 -4.812 -1.481 -1.443 O32 5A3 30 5A3 O13 O19 O 0 1 N N N -2.149 19.781 10.815 -2.413 2.376 0.276 O13 5A3 31 5A3 PA3 P6 P 0 1 N N N -3.117 18.524 11.053 -2.918 3.470 1.344 PA3 5A3 32 5A3 O43 O20 O 0 1 N N N -4.462 19.053 10.764 -3.861 4.545 0.605 O43 5A3 33 5A3 O33 O21 O 0 1 N N N -2.593 17.541 10.114 -3.684 2.796 2.416 O33 5A3 34 5A3 O23 O22 O 0 1 N N N -2.904 18.198 12.497 -1.647 4.222 1.985 O23 5A3 35 5A3 O14 O23 O 0 1 N N N -0.956 20.304 13.441 0.411 2.450 0.276 O14 5A3 36 5A3 PA4 P7 P 0 1 N N N -2.180 20.973 14.244 0.859 3.566 -0.794 PA4 5A3 37 5A3 O24 O24 O 0 1 N N N -3.333 20.160 13.859 1.515 4.817 -0.021 O24 5A3 38 5A3 O44 O25 O 0 1 N N N -1.706 20.811 15.645 1.938 2.936 -1.808 O44 5A3 39 5A3 O34 O26 O 0 1 N N N -2.270 22.396 13.781 -0.326 4.023 -1.555 O34 5A3 40 5A3 H1 H1 H 0 1 N N N -0.101 19.250 9.105 -3.360 -0.065 0.773 H1 5A3 41 5A3 H2 H2 H 0 1 N N N 1.967 19.203 10.353 -1.407 -1.263 1.721 H2 5A3 42 5A3 H3 H3 H 0 1 N N N -0.846 21.748 11.934 -0.470 1.258 -1.164 H3 5A3 43 5A3 H4 H4 H 0 1 N N N 1.453 20.042 12.987 0.697 0.041 1.380 H4 5A3 44 5A3 H5 H5 H 0 1 N N N 1.709 22.198 10.864 -0.405 -1.239 -1.162 H5 5A3 45 5A3 H6 H6 H 0 1 N N N -0.429 18.750 11.445 -1.472 1.235 1.719 H6 5A3 46 5A3 H7 H7 H 0 1 N N N 2.486 25.301 17.440 6.169 -2.075 0.643 H7 5A3 47 5A3 H8 H8 H 0 1 N N N 4.771 22.429 17.679 8.231 -0.054 -0.634 H8 5A3 48 5A3 H9 H9 H 0 1 N N N 4.068 22.814 14.379 4.490 0.829 -1.517 H9 5A3 49 5A3 H10 H10 H 0 1 N N N 2.862 24.144 14.333 4.462 -0.945 -1.379 H10 5A3 50 5A3 H11 H11 H 0 1 N N N 0.538 21.693 16.427 3.280 2.277 0.655 H11 5A3 51 5A3 H12 H12 H 0 1 N N N 3.635 24.005 10.675 2.873 -2.428 -1.373 H12 5A3 52 5A3 H13 H13 H 0 1 N N N 6.108 21.790 12.293 2.092 -5.386 -0.595 H13 5A3 53 5A3 H14 H14 H 0 1 N N N 4.798 20.608 9.624 -0.854 -4.691 1.346 H14 5A3 54 5A3 H15 H15 H 0 1 N N N 2.825 18.270 7.036 -3.927 -5.402 1.199 H15 5A3 55 5A3 H16 H16 H 0 1 N N N -2.636 20.424 7.325 -4.826 0.032 -3.874 H16 5A3 56 5A3 H17 H17 H 0 1 N N N 0.244 22.695 6.726 -4.338 -2.262 -1.760 H17 5A3 57 5A3 H18 H18 H 0 1 N N N -4.797 18.652 9.971 -4.203 5.236 1.190 H18 5A3 58 5A3 H19 H19 H 0 1 N N N -2.443 17.370 12.571 -1.098 4.687 1.338 H19 5A3 59 5A3 H20 H20 H 0 1 N N N -3.949 20.694 13.371 1.809 5.530 -0.605 H20 5A3 60 5A3 H21 H21 H 0 1 N N N -1.535 21.666 16.023 2.742 2.615 -1.378 H21 5A3 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5A3 O42 PA2 DOUB N N 1 5A3 O31 PA1 DOUB N N 2 5A3 O32 PA2 SING N N 3 5A3 PA2 O22 SING N N 4 5A3 PA2 O12 SING N N 5 5A3 O21 PA1 SING N N 6 5A3 PA1 O11 SING N N 7 5A3 PA1 O41 SING N N 8 5A3 O11 C1 SING N N 9 5A3 O12 C2 SING N N 10 5A3 C2 C1 SING N N 11 5A3 C2 C3 SING N N 12 5A3 C1 C6 SING N N 13 5A3 O46 PA6 DOUB N N 14 5A3 O33 PA3 DOUB N N 15 5A3 O43 PA3 SING N N 16 5A3 O13 PA3 SING N N 17 5A3 O13 C3 SING N N 18 5A3 PA3 O23 SING N N 19 5A3 C3 C4 SING N N 20 5A3 C6 O16 SING N N 21 5A3 C6 C5 SING N N 22 5A3 PA6 O36 SING N N 23 5A3 PA6 O16 SING N N 24 5A3 PA6 O26 SING N N 25 5A3 C4 C5 SING N N 26 5A3 C4 O14 SING N N 27 5A3 C5 O15 SING N N 28 5A3 O15 PA5 SING N N 29 5A3 O14 PA4 SING N N 30 5A3 O34 PA4 DOUB N N 31 5A3 O24 PA4 SING N N 32 5A3 PA4 O44 SING N N 33 5A3 PA5 CB5 SING N N 34 5A3 PA5 O25 DOUB N N 35 5A3 PA5 O35 SING N N 36 5A3 CB5 PB5 SING N N 37 5A3 O55 PB5 DOUB N N 38 5A3 PB5 O75 SING N N 39 5A3 PB5 O65 SING N N 40 5A3 C2 H1 SING N N 41 5A3 C1 H2 SING N N 42 5A3 C4 H3 SING N N 43 5A3 C5 H4 SING N N 44 5A3 C6 H5 SING N N 45 5A3 C3 H6 SING N N 46 5A3 O75 H7 SING N N 47 5A3 O65 H8 SING N N 48 5A3 CB5 H9 SING N N 49 5A3 CB5 H10 SING N N 50 5A3 O35 H11 SING N N 51 5A3 O36 H12 SING N N 52 5A3 O26 H13 SING N N 53 5A3 O41 H14 SING N N 54 5A3 O21 H15 SING N N 55 5A3 O22 H16 SING N N 56 5A3 O32 H17 SING N N 57 5A3 O43 H18 SING N N 58 5A3 O23 H19 SING N N 59 5A3 O24 H20 SING N N 60 5A3 O44 H21 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5A3 SMILES ACDLabs 12.01 "O=P(OC1C(C(C(C(OP(CP(O)(O)=O)(=O)O)C1OP(O)(O)=O)OP(O)(O)=O)OP(O)(O)=O)OP(O)(=O)O)(O)O" 5A3 InChI InChI 1.03 "InChI=1S/C7H21O26P7/c8-34(9,10)1-35(11,12)28-2-3(29-36(13,14)15)5(31-38(19,20)21)7(33-40(25,26)27)6(32-39(22,23)24)4(2)30-37(16,17)18/h2-7H,1H2,(H,11,12)(H2,8,9,10)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)(H2,25,26,27)/t2-,3-,4+,5+,6-,7+" 5A3 InChIKey InChI 1.03 IZNCMXVIYGYGJI-AQWRHFAGSA-N 5A3 SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)C[P](O)(=O)O[C@@H]1[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H]1O[P](O)(O)=O" 5A3 SMILES CACTVS 3.385 "O[P](O)(=O)C[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" 5A3 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(P(=O)(O)O)P(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@@H]1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" 5A3 SMILES "OpenEye OEToolkits" 1.9.2 "C(P(=O)(O)O)P(=O)(O)OC1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5A3 "SYSTEMATIC NAME" ACDLabs 12.01 "{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid" 5A3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[oxidanyl-[(2S,3R,5S,6R)-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5A3 "Create component" 2015-08-28 RCSB 5A3 "Modify name" 2015-08-31 RCSB 5A3 "Initial release" 2016-08-10 RCSB 5A3 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5A3 _pdbx_chem_comp_synonyms.name "{[(R)-hydroxy{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]oxy}phosphoryl]methyl}phosphonic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##