data_5A6 # _chem_comp.id 5A6 _chem_comp.name "(2S)-2-amino-4-[5-(5-aminopentyl)-1,3,4-oxadiazol-2-yl]butanoic acid" _chem_comp.type "peptide linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H20 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-28 _chem_comp.pdbx_modified_date 2016-02-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 256.301 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5A6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DG6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5A6 O O1 O 0 1 N N N -4.305 3.700 6.386 -5.920 -1.214 -1.172 O 5A6 1 5A6 C C1 C 0 1 N N N -4.210 4.611 7.199 -5.604 -0.315 -0.428 C02 5A6 2 5A6 N18 N1 N 0 1 N N N -1.312 3.264 1.561 8.213 -1.082 0.483 N18 5A6 3 5A6 C19 C2 C 0 1 N N N -0.340 4.143 2.162 7.174 -0.706 -0.484 C19 5A6 4 5A6 C20 C3 C 0 1 N N N 1.066 3.590 1.926 5.858 -0.452 0.254 C20 5A6 5 5A6 C21 C4 C 0 1 N N N 1.834 3.398 3.224 4.775 -0.060 -0.753 C21 5A6 6 5A6 C22 C5 C 0 1 N N N 2.623 4.662 3.509 3.460 0.195 -0.015 C22 5A6 7 5A6 C23 C6 C 0 1 N N N 3.189 4.593 4.905 2.377 0.587 -1.023 C23 5A6 8 5A6 CA C7 C 0 1 N N S -3.057 4.652 8.158 -4.510 -0.526 0.586 C28 5A6 9 5A6 C29 C8 C 0 1 N N N -1.829 5.184 7.438 -3.206 0.082 0.065 C29 5A6 10 5A6 C30 C9 C 0 1 N N N -0.563 5.041 8.262 -2.127 -0.021 1.144 C30 5A6 11 5A6 C31 C10 C 0 1 Y N N 0.554 5.380 7.318 -0.844 0.578 0.630 C31 5A6 12 5A6 N32 N2 N 0 1 Y N N 0.977 6.625 7.028 -0.473 1.821 0.744 N32 5A6 13 5A6 N33 N3 N 0 1 Y N N 2.014 6.505 6.100 0.678 1.977 0.191 N33 5A6 14 5A6 C34 C11 C 0 1 Y N N 2.186 5.190 5.851 1.081 0.837 -0.295 C34 5A6 15 5A6 O35 O2 O 0 1 Y N N 1.289 4.483 6.592 0.132 -0.074 -0.024 O35 5A6 16 5A6 N N4 N 0 1 N N N -2.838 3.331 8.700 -4.323 -1.966 0.812 N36 5A6 17 5A6 H2 H2 H 0 1 N N N -2.231 3.627 1.716 9.092 -1.256 0.020 H2 5A6 18 5A6 H3 H3 H 0 1 N N N -1.140 3.200 0.578 8.314 -0.378 1.198 H3 5A6 19 5A6 H5 H5 H 0 1 N N N -0.421 5.142 1.710 7.477 0.200 -1.010 H5 5A6 20 5A6 H6 H6 H 0 1 N N N -0.529 4.213 3.243 7.036 -1.514 -1.203 H6 5A6 21 5A6 H7 H7 H 0 1 N N N 0.984 2.619 1.416 5.555 -1.357 0.779 H7 5A6 22 5A6 H8 H8 H 0 1 N N N 1.620 4.293 1.287 5.995 0.356 0.973 H8 5A6 23 5A6 H9 H9 H 0 1 N N N 1.130 3.207 4.047 5.078 0.846 -1.279 H9 5A6 24 5A6 H10 H10 H 0 1 N N N 2.522 2.546 3.125 4.638 -0.868 -1.472 H10 5A6 25 5A6 H11 H11 H 0 1 N N N 3.445 4.753 2.784 3.157 -0.711 0.510 H11 5A6 26 5A6 H12 H12 H 0 1 N N N 1.960 5.536 3.424 3.597 1.003 0.704 H12 5A6 27 5A6 H13 H13 H 0 1 N N N 3.379 3.544 5.178 2.680 1.492 -1.548 H13 5A6 28 5A6 H14 H14 H 0 1 N N N 4.130 5.161 4.953 2.240 -0.221 -1.741 H14 5A6 29 5A6 H15 H15 H 0 1 N N N -3.306 5.344 8.976 -4.786 -0.044 1.524 H15 5A6 30 5A6 H16 H16 H 0 1 N N N -1.703 4.627 6.498 -2.883 -0.459 -0.825 H16 5A6 31 5A6 H17 H17 H 0 1 N N N -1.986 6.250 7.214 -3.370 1.130 -0.187 H17 5A6 32 5A6 H18 H18 H 0 1 N N N -0.457 4.011 8.633 -2.450 0.520 2.034 H18 5A6 33 5A6 H19 H19 H 0 1 N N N -0.575 5.738 9.113 -1.964 -1.069 1.396 H19 5A6 34 5A6 H20 H20 H 0 1 N N N -2.070 3.356 9.340 -5.149 -2.379 1.218 H20 5A6 35 5A6 H21 H21 H 0 1 N N N -3.661 3.027 9.179 -4.066 -2.436 -0.043 H21 5A6 36 5A6 OXT OXT O 0 1 N N N -5.076 5.606 7.274 -6.224 0.873 -0.509 OXT 5A6 37 5A6 H1 H1 H 0 1 N N N -5.750 5.490 6.615 -6.917 0.961 -1.178 H1 5A6 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5A6 N18 C19 SING N N 1 5A6 C20 C19 SING N N 2 5A6 C20 C21 SING N N 3 5A6 C21 C22 SING N N 4 5A6 C22 C23 SING N N 5 5A6 C23 C34 SING N N 6 5A6 C34 N33 DOUB Y N 7 5A6 C34 O35 SING Y N 8 5A6 N33 N32 SING Y N 9 5A6 O C DOUB N N 10 5A6 O35 C31 SING Y N 11 5A6 N32 C31 DOUB Y N 12 5A6 C CA SING N N 13 5A6 C31 C30 SING N N 14 5A6 C29 CA SING N N 15 5A6 C29 C30 SING N N 16 5A6 CA N SING N N 17 5A6 N18 H2 SING N N 18 5A6 N18 H3 SING N N 19 5A6 C19 H5 SING N N 20 5A6 C19 H6 SING N N 21 5A6 C20 H7 SING N N 22 5A6 C20 H8 SING N N 23 5A6 C21 H9 SING N N 24 5A6 C21 H10 SING N N 25 5A6 C22 H11 SING N N 26 5A6 C22 H12 SING N N 27 5A6 C23 H13 SING N N 28 5A6 C23 H14 SING N N 29 5A6 CA H15 SING N N 30 5A6 C29 H16 SING N N 31 5A6 C29 H17 SING N N 32 5A6 C30 H18 SING N N 33 5A6 C30 H19 SING N N 34 5A6 N H20 SING N N 35 5A6 N H21 SING N N 36 5A6 C OXT SING N N 37 5A6 OXT H1 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5A6 SMILES ACDLabs 12.01 "O=C(C(N)CCc1nnc(CCCCCN)o1)O" 5A6 InChI InChI 1.03 "InChI=1S/C11H20N4O3/c12-7-3-1-2-4-9-14-15-10(18-9)6-5-8(13)11(16)17/h8H,1-7,12-13H2,(H,16,17)/t8-/m0/s1" 5A6 InChIKey InChI 1.03 XXNJPPZYKMFZTO-QMMMGPOBSA-N 5A6 SMILES_CANONICAL CACTVS 3.385 "NCCCCCc1oc(CC[C@H](N)C(O)=O)nn1" 5A6 SMILES CACTVS 3.385 "NCCCCCc1oc(CC[CH](N)C(O)=O)nn1" 5A6 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(CCc1nnc(o1)CC[C@@H](C(=O)O)N)CCN" 5A6 SMILES "OpenEye OEToolkits" 1.9.2 "C(CCc1nnc(o1)CCC(C(=O)O)N)CCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5A6 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-amino-4-[5-(5-aminopentyl)-1,3,4-oxadiazol-2-yl]butanoic acid" 5A6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-4-[5-(5-azanylpentyl)-1,3,4-oxadiazol-2-yl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5A6 "Create component" 2015-08-28 RCSB 5A6 "Initial release" 2016-02-10 RCSB #