data_5AD # _chem_comp.id 5AD _chem_comp.name "5'-DEOXYADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 251.242 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5AD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4REQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5AD N1 N1 N 0 1 Y N N 74.785 66.266 3.163 -0.972 -0.190 4.023 N1 5AD 1 5AD C2 C2 C 0 1 Y N N 73.600 65.669 3.037 -1.789 -0.644 3.091 C2 5AD 2 5AD N3 N3 N 0 1 Y N N 72.436 66.051 2.561 -1.450 -0.700 1.820 N3 5AD 3 5AD C4 C4 C 0 1 Y N N 72.620 67.313 2.148 -0.252 -0.288 1.420 C4 5AD 4 5AD N9 N9 N 0 1 Y N N 71.647 68.082 1.586 0.396 -0.221 0.213 N9 5AD 5 5AD C8 C8 C 0 1 Y N N 72.196 69.300 1.297 1.637 0.293 0.443 C8 5AD 6 5AD N7 N7 N 0 1 Y N N 73.460 69.361 1.641 1.787 0.539 1.713 N7 5AD 7 5AD C5 C5 C 0 1 Y N N 73.745 68.117 2.177 0.656 0.198 2.375 C5 5AD 8 5AD C6 C6 C 0 1 Y N N 74.898 67.535 2.721 0.248 0.237 3.719 C6 5AD 9 5AD N6 N6 N 0 1 N N N 76.072 68.126 2.846 1.097 0.712 4.703 N6 5AD 10 5AD "C1'" "C1'" C 0 1 N N R 70.298 67.596 1.360 -0.147 -0.623 -1.086 "C1'" 5AD 11 5AD "C2'" "C2'" C 0 1 N N R 69.255 68.455 2.021 -0.847 0.574 -1.758 "C2'" 5AD 12 5AD "C3'" "C3'" C 0 1 N N S 69.171 69.664 1.117 -0.101 0.745 -3.105 "C3'" 5AD 13 5AD "C4'" "C4'" C 0 1 N N R 69.856 69.223 -0.183 0.545 -0.650 -3.295 "C4'" 5AD 14 5AD "C5'" "C5'" C 0 1 N N N 71.142 69.988 -0.393 1.781 -0.553 -4.193 "C5'" 5AD 15 5AD "O4'" "O4'" O 0 1 N N N 70.090 67.806 -0.039 0.919 -1.037 -1.956 "O4'" 5AD 16 5AD "O2'" "O2'" O 0 1 N N N 68.035 67.753 2.089 -2.228 0.283 -1.985 "O2'" 5AD 17 5AD "O3'" "O3'" O 0 1 N N N 67.832 70.047 0.833 -1.018 1.037 -4.162 "O3'" 5AD 18 5AD H2 H2 H 0 1 N N N 73.577 64.630 3.408 -2.773 -0.983 3.381 H2 5AD 19 5AD H8 H8 H 0 1 N N N 71.670 70.150 0.831 2.384 0.471 -0.314 H8 5AD 20 5AD HN61 1HN6 H 0 0 N N N 76.157 69.085 2.511 0.803 0.735 5.627 HN61 5AD 21 5AD HN62 2HN6 H 0 0 N N N 76.787 67.550 2.401 1.985 1.022 4.469 HN62 5AD 22 5AD "H1'" "H1'" H 0 1 N N N 70.208 66.551 1.740 -0.856 -1.440 -0.954 "H1'" 5AD 23 5AD "H2'" "H2'" H 0 1 N N N 69.497 68.741 3.071 -0.743 1.469 -1.145 "H2'" 5AD 24 5AD "H3'" "H3'" H 0 1 N N N 69.646 70.547 1.602 0.662 1.519 -3.031 "H3'" 5AD 25 5AD "H4'" "H4'" H 0 1 N N N 69.227 69.431 -1.079 -0.175 -1.353 -3.711 "H4'" 5AD 26 5AD "H5'1" "1H5'" H 0 0 N N N 71.639 69.667 -1.337 2.243 -1.536 -4.282 "H5'1" 5AD 27 5AD "H5'2" "2H5'" H 0 0 N N N 70.976 71.090 -0.365 1.486 -0.198 -5.180 "H5'2" 5AD 28 5AD "H5'3" "3H5'" H 0 0 N N N 71.824 69.899 0.484 2.494 0.144 -3.755 "H5'3" 5AD 29 5AD "HO2'" "'HO2" H 0 0 N N N 67.376 68.295 2.506 -2.612 1.064 -2.405 "HO2'" 5AD 30 5AD "HO3'" "'HO3" H 0 0 N N N 67.779 70.806 0.265 -0.493 1.131 -4.969 "HO3'" 5AD 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5AD N1 C2 DOUB Y N 1 5AD N1 C6 SING Y N 2 5AD C2 N3 SING Y N 3 5AD C2 H2 SING N N 4 5AD N3 C4 DOUB Y N 5 5AD C4 N9 SING Y N 6 5AD C4 C5 SING Y N 7 5AD N9 C8 SING Y N 8 5AD N9 "C1'" SING N N 9 5AD C8 N7 DOUB Y N 10 5AD C8 H8 SING N N 11 5AD N7 C5 SING Y N 12 5AD C5 C6 DOUB Y N 13 5AD C6 N6 SING N N 14 5AD N6 HN61 SING N N 15 5AD N6 HN62 SING N N 16 5AD "C1'" "C2'" SING N N 17 5AD "C1'" "O4'" SING N N 18 5AD "C1'" "H1'" SING N N 19 5AD "C2'" "C3'" SING N N 20 5AD "C2'" "O2'" SING N N 21 5AD "C2'" "H2'" SING N N 22 5AD "C3'" "C4'" SING N N 23 5AD "C3'" "O3'" SING N N 24 5AD "C3'" "H3'" SING N N 25 5AD "C4'" "C5'" SING N N 26 5AD "C4'" "O4'" SING N N 27 5AD "C4'" "H4'" SING N N 28 5AD "C5'" "H5'1" SING N N 29 5AD "C5'" "H5'2" SING N N 30 5AD "C5'" "H5'3" SING N N 31 5AD "O2'" "HO2'" SING N N 32 5AD "O3'" "HO3'" SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5AD SMILES ACDLabs 10.04 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)C)N" 5AD SMILES_CANONICAL CACTVS 3.341 "C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 5AD SMILES CACTVS 3.341 "C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 5AD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 5AD SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" 5AD InChI InChI 1.03 "InChI=1S/C10H13N5O3/c1-4-6(16)7(17)10(18-4)15-3-14-5-8(11)12-2-13-9(5)15/h2-4,6-7,10,16-17H,1H3,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1" 5AD InChIKey InChI 1.03 XGYIMTFOTBMPFP-KQYNXXCUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5AD "SYSTEMATIC NAME" ACDLabs 10.04 "5'-deoxyadenosine" 5AD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-methyl-oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5AD "Create component" 1999-07-08 PDBJ 5AD "Modify descriptor" 2011-06-04 RCSB ##