data_5AE # _chem_comp.id 5AE _chem_comp.name "4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H12 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 5-azacytidine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-05-19 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.205 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 5AE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4QD3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 5AE O2 O2 O 0 1 N N N -5.831 15.810 5.854 -1.691 -1.515 1.670 O2 5AE 1 5AE C2 C2 C 0 1 N N N -7.019 15.549 6.110 -1.961 -0.660 0.844 C2 5AE 2 5AE N3 N3 N 0 1 N N N -7.969 16.401 5.663 -3.234 -0.326 0.613 N3 5AE 3 5AE C4 C4 C 0 1 N N N -9.264 16.163 5.934 -3.522 0.604 -0.286 C4 5AE 4 5AE N4 N4 N 0 1 N N N -10.195 17.025 5.476 -4.832 0.944 -0.520 N4 5AE 5 5AE N5 N5 N 0 1 N N N -9.616 15.060 6.655 -2.544 1.214 -0.970 N5 5AE 6 5AE N1 N1 N 0 1 N N N -7.365 14.452 6.826 -0.976 -0.042 0.159 N1 5AE 7 5AE C6 C6 C 0 1 N N N -8.664 14.220 7.092 -1.290 0.899 -0.757 C6 5AE 8 5AE "C1'" "C1'" C 0 1 N N R -6.325 13.532 7.319 0.425 -0.393 0.405 "C1'" 5AE 9 5AE "O4'" "O4'" O 0 1 N N N -6.646 12.158 7.065 1.219 0.796 0.608 "O4'" 5AE 10 5AE "C4'" "C4'" C 0 1 N N R -5.858 11.393 7.975 2.584 0.440 0.336 "C4'" 5AE 11 5AE "C5'" "C5'" C 0 1 N N N -6.382 9.964 8.086 3.316 1.628 -0.292 "C5'" 5AE 12 5AE "O5'" "O5'" O 0 1 N N N -7.738 9.954 8.554 3.420 2.684 0.665 "O5'" 5AE 13 5AE "C3'" "C3'" C 0 1 N N S -5.894 12.191 9.275 2.561 -0.742 -0.652 "C3'" 5AE 14 5AE "O3'" "O3'" O 0 1 N N N -4.689 12.037 10.026 3.222 -1.878 -0.088 "O3'" 5AE 15 5AE "C2'" "C2'" C 0 1 N N R -6.114 13.633 8.831 1.055 -1.038 -0.855 "C2'" 5AE 16 5AE "O2'" "O2'" O 0 1 N N N -4.989 14.473 9.163 0.811 -2.445 -0.885 "O2'" 5AE 17 5AE H1 H1 H 0 1 N N N -9.917 17.825 4.944 -5.542 0.505 -0.026 H1 5AE 18 5AE H2 H2 H 0 1 N N N -11.163 16.864 5.668 -5.046 1.624 -1.177 H2 5AE 19 5AE H3 H3 H 0 1 N N N -8.944 13.348 7.664 -0.508 1.395 -1.312 H3 5AE 20 5AE H4 H4 H 0 1 N N N -5.373 13.779 6.826 0.507 -1.063 1.261 H4 5AE 21 5AE H5 H5 H 0 1 N N N -4.817 11.354 7.621 3.082 0.145 1.260 H5 5AE 22 5AE H6 H6 H 0 1 N N N -6.338 9.486 7.096 4.314 1.318 -0.601 H6 5AE 23 5AE H7 H7 H 0 1 N N N -5.753 9.403 8.792 2.759 1.979 -1.161 H7 5AE 24 5AE H8 H8 H 0 1 N N N -8.045 9.057 8.616 3.873 3.471 0.335 H8 5AE 25 5AE H9 H9 H 0 1 N N N -6.759 11.864 9.871 3.028 -0.460 -1.596 H9 5AE 26 5AE H10 H10 H 0 1 N N N -4.747 12.546 10.826 4.155 -1.729 0.114 H10 5AE 27 5AE H11 H11 H 0 1 N N N -7.032 14.020 9.298 0.684 -0.561 -1.763 H11 5AE 28 5AE H12 H12 H 0 1 N N N -4.890 14.511 10.107 1.186 -2.893 -1.655 H12 5AE 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5AE N4 C4 SING N N 1 5AE N3 C4 DOUB N N 2 5AE N3 C2 SING N N 3 5AE O2 C2 DOUB N N 4 5AE C4 N5 SING N N 5 5AE C2 N1 SING N N 6 5AE N5 C6 DOUB N N 7 5AE N1 C6 SING N N 8 5AE N1 "C1'" SING N N 9 5AE "O4'" "C1'" SING N N 10 5AE "O4'" "C4'" SING N N 11 5AE "C1'" "C2'" SING N N 12 5AE "C4'" "C5'" SING N N 13 5AE "C4'" "C3'" SING N N 14 5AE "C5'" "O5'" SING N N 15 5AE "C2'" "O2'" SING N N 16 5AE "C2'" "C3'" SING N N 17 5AE "C3'" "O3'" SING N N 18 5AE N4 H1 SING N N 19 5AE N4 H2 SING N N 20 5AE C6 H3 SING N N 21 5AE "C1'" H4 SING N N 22 5AE "C4'" H5 SING N N 23 5AE "C5'" H6 SING N N 24 5AE "C5'" H7 SING N N 25 5AE "O5'" H8 SING N N 26 5AE "C3'" H9 SING N N 27 5AE "O3'" H10 SING N N 28 5AE "C2'" H11 SING N N 29 5AE "O2'" H12 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 5AE SMILES ACDLabs 12.01 "O=C1N=C(N=CN1C2OC(C(O)C2O)CO)N" 5AE InChI InChI 1.03 "InChI=1S/C8H12N4O5/c9-7-10-2-12(8(16)11-7)6-5(15)4(14)3(1-13)17-6/h2-6,13-15H,1H2,(H2,9,11,16)/t3-,4-,5-,6-/m1/s1" 5AE InChIKey InChI 1.03 NMUSYJAQQFHJEW-KVTDHHQDSA-N 5AE SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=N1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O" 5AE SMILES CACTVS 3.385 "NC1=NC(=O)N(C=N1)[CH]2O[CH](CO)[CH](O)[CH]2O" 5AE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=NC(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O)N" 5AE SMILES "OpenEye OEToolkits" 1.7.6 "C1=NC(=NC(=O)N1C2C(C(C(O2)CO)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 5AE "SYSTEMATIC NAME" ACDLabs 12.01 "4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one" 5AE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-azanyl-1-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1,3,5-triazin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 5AE "Create component" 2014-05-19 PDBJ 5AE "Initial release" 2014-06-25 RCSB 5AE "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 5AE _pdbx_chem_comp_synonyms.name 5-azacytidine _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##